Rorug04G0444400

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000510
Physical Location & Seq
Forward (+)
60073733 .. 60073993
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0444400.1

Sequence Viewer

Length: 261 bp
ATGGGAACTTCATCGCACCCTCCGGTGGACCGTCAAACGGCCAAGGCTGCCATTCTTGAAGCAATCAAAGTGGGTTACCTCCACTTTGACACCGCCTTTGCTTATGGTAATTCAGAGCAACATTTGGGGGAAGCTATTGCTGATGCTCTACGTCTTGGACTCATCGAGTCGAGGGATGAGCTCTTCATCACAACCAAGCTTTGGGCCAGCTTTGCTGAAAGAGATCTTGTGCTGCCTGCAATCAACACCAGTTTAAGGTAA

Protein Analysis

86

Amino Acids

9.44

Weight (kDa)

5.46

Isoelectric Point (pI)

29.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 6 - 86 1.7e-12 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 201
AciI CCGC 1 cut(s) 93
AcoI YGGCCR 1 cut(s) 39
AfiI CCNNNNNNNGG 4 cut(s) 25, 37, 201, 255
AgsI TTSAA 1 cut(s) 59
AluBI AGCT 4 cut(s) 134, 181, 199, 210
AluI AGCT 4 cut(s) 134, 181, 199, 210
Alw21I GWGCWC 1 cut(s) 183
AoxI GGCC 2 cut(s) 39, 204
ApeKI GCWGC 2 cut(s) 47, 232
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
AspS9I GGNCC 2 cut(s) 28, 204
AvaII GGWCC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 2 cut(s) 34, 219
BceAI ACGGC 1 cut(s) 54
BglII AGATCT 1 cut(s) 223
BisI GCNGC 2 cut(s) 48, 233
BlsI GCNGC 2 cut(s) 49, 234
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 2 cut(s) 28, 204
BmsI GCATC 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 42
BsaWI WCCGGW 1 cut(s) 22
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 37, 201, 255
Bse1I ACTGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 4 cut(s) 25, 37, 201, 255
BseNI ACTGG 1 cut(s) 249
BseXI GCAGC 2 cut(s) 34, 219
BshFI GGCC 2 cut(s) 41, 206
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 1 cut(s) 23
BslI CCNNNNNNNGG 4 cut(s) 25, 37, 201, 255
BsnI GGCC 2 cut(s) 41, 206
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 1 cut(s) 223
BspACI CCGC 1 cut(s) 93
BspANI GGCC 2 cut(s) 41, 206
BspQI GCTCTTC 1 cut(s) 188
BsrI ACTGG 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 1 cut(s) 223
BssT1I CCWWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 208, 237
BstEII GGTNACC 1 cut(s) 74
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 1 cut(s) 226
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 2 cut(s) 47, 212
BstPI GGTNACC 1 cut(s) 74
BstV1I GCAGC 2 cut(s) 34, 219
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BsuRI GGCC 2 cut(s) 41, 206
BtsCI GGATG 1 cut(s) 181
Cac8I GCNNGC 2 cut(s) 208, 237
Cfr13I GGNCC 2 cut(s) 28, 204
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviJI RGCY 7 cut(s) 41, 47, 134, 181, 199, 206, 210
CviKI_1 RGCY 7 cut(s) 41, 47, 134, 181, 199, 206, 210
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 181
Eco91I GGTNACC 1 cut(s) 74
EcoICRI GAGCTC 1 cut(s) 181
EcoO65I GGTNACC 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 42
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 42
FaiI YATR 1 cut(s) 105
Fnu4HI GCNGC 2 cut(s) 48, 233
FokI GGATG 1 cut(s) 188
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 2 cut(s) 48, 233
GluI GCNGC 2 cut(s) 48, 233
HaeIII GGCC 2 cut(s) 41, 206
HapII CCGG 1 cut(s) 23
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 2 cut(s) 159, 167
HpaII CCGG 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 212
HpySE526I ACGT 1 cut(s) 151
Kzo9I GATC 1 cut(s) 223
LguI GCTCTTC 1 cut(s) 188
LpnPI CCDG 3 cut(s) 36, 220, 249
Lsp1109I GCAGC 2 cut(s) 34, 219
LweI GCATC 1 cut(s) 133
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 1 cut(s) 74
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 1 cut(s) 175
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 1 cut(s) 109
MlyI GAGTC 2 cut(s) 153, 176
MnlI CCTC 3 cut(s) 30, 89, 165
MseI TTAA 1 cut(s) 254
MspI CCGG 1 cut(s) 23
MwoI GCNNNNNNNGC 2 cut(s) 47, 212
NdeII GATC 1 cut(s) 223
PciSI GCTCTTC 1 cut(s) 188
PflMI CCANNNNNTGG 1 cut(s) 201
PkrI GCNGC 2 cut(s) 49, 234
PleI GAGTC 2 cut(s) 153, 175
PpsI GAGTC 2 cut(s) 153, 175
Psp124BI GAGCTC 1 cut(s) 183
PspEI GGTNACC 1 cut(s) 74
PspPI GGNCC 2 cut(s) 28, 204
PsuI RGATCY 1 cut(s) 223
SacI GAGCTC 1 cut(s) 183
SapI GCTCTTC 1 cut(s) 188
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 2 cut(s) 48, 233
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 2 cut(s) 28, 204
SchI GAGTC 2 cut(s) 153, 176
SduI GDGCHC 1 cut(s) 183
SetI ASST 7 cut(s) 81, 136, 154, 183, 201, 212, 260
SfaNI GCATC 1 cut(s) 133
SinI GGWCC 1 cut(s) 28
Sse9I AATT 1 cut(s) 109
SsiI CCGC 1 cut(s) 93
SstI GAGCTC 1 cut(s) 183
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 1 cut(s) 154
TaqI TCGA 2 cut(s) 165, 170
TasI AATT 1 cut(s) 109
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TseI GCWGC 2 cut(s) 47, 232
TspDTI ATGAA 1 cut(s) 175
Van91I CCANNNNNTGG 1 cut(s) 201
VpaK11BI GGWCC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.