RchiOBHm_Chr5g0009541

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000510
Physical Location & Seq
Forward (+)
6334835 .. 6335503
669 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29041

Sequence Viewer

Length: 387 bp
ATGAGCGACCAAACTCCGCATATTGCTCTGTATACATGGTTTGCTATGGGGCATTTGACTGCATATCTTCACATCTCGAACAAACTTGCAGAAAGGGGCCACAAGATCTCCTTTTTACCTCTCAAAACTCAATCCAAATTGCAGCACTATAATCTCCACCCTCATCTCATTACATTCATTCCCCTCGATGTCCCTCGTGTTGATGGCCTCCCTCTGGGGACTGAAACCACAGCTGACATTCCTCTCTCTTTAGGCTCTCTTCTTGCCACCGCCATGGACCTCACCCGACCCCAAATCGAACAATATCTCCTCAAACTCAAGCCTGATTTTGTGTTCTTCGATTTTAGTAACTGGTTGCCCGATTTGTTGCGTCAACTAGGCAATTAG

Protein Analysis

128

Amino Acids

14.59

Weight (kDa)

6.64

Isoelectric Point (pI)

38.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 32
AciI CCGC 2 cut(s) 17, 270
AfiI CCNNNNNNNGG 1 cut(s) 214
AloI GAACNNNNNNTCC 2 cut(s) 291, 323
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
AoxI GGCC 2 cut(s) 97, 205
ApeKI GCWGC 1 cut(s) 142
AspS9I GGNCC 2 cut(s) 97, 277
AsuHPI GGTGA 1 cut(s) 274
AvaII GGWCC 1 cut(s) 277
BauI CACGAG 1 cut(s) 195
BbvI GCAGC 1 cut(s) 154
BccI CCATC 1 cut(s) 197
BfaI CTAG 1 cut(s) 377
BglII AGATCT 1 cut(s) 105
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 2 cut(s) 97, 277
BmiI GGNNCC 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 273
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 291, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 214
BseNI ACTGG 1 cut(s) 356
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 1 cut(s) 154
BshFI GGCC 2 cut(s) 99, 207
BslFI GGGAC 2 cut(s) 176, 232
BslI CCNNNNNNNGG 1 cut(s) 214
BsmFI GGGAC 2 cut(s) 176, 232
BsnI GGCC 2 cut(s) 99, 207
Bsp143I GATC 1 cut(s) 105
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 2 cut(s) 17, 270
BspANI GGCC 2 cut(s) 99, 207
BspLI GGNNCC 1 cut(s) 98
BsrI ACTGG 1 cut(s) 356
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 1 cut(s) 105
BssNAI GTATAC 1 cut(s) 33
BssSI CACGAG 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 273
Bst1107I GTATAC 1 cut(s) 33
Bst2BI CACGAG 1 cut(s) 195
Bst6I CTCTTC 1 cut(s) 264
BstDSI CCRYGG 1 cut(s) 273
BstKTI GATC 1 cut(s) 108
BstMBI GATC 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 105
BstXI CCANNNNNNTGG 1 cut(s) 274
BstYI RGATCY 1 cut(s) 105
BstZ17I GTATAC 1 cut(s) 33
BsuRI GGCC 2 cut(s) 99, 207
BtgI CCRYGG 1 cut(s) 273
Cfr13I GGNCC 2 cut(s) 97, 277
CseI GACGC 1 cut(s) 359
CviAII CATG 2 cut(s) 36, 274
CviJI RGCY 5 cut(s) 99, 207, 233, 255, 322
CviKI_1 RGCY 5 cut(s) 99, 207, 233, 255, 322
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco130I CCWWGG 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 2 cut(s) 39, 277
FaiI YATR 7 cut(s) 21, 33, 37, 47, 64, 150, 275
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FaqI GGGAC 2 cut(s) 176, 232
FatI CATG 2 cut(s) 35, 273
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 143
FspBI CTAG 1 cut(s) 377
GluI GCNGC 1 cut(s) 143
HaeIII GGCC 2 cut(s) 99, 207
HgaI GACGC 1 cut(s) 359
Hin1II CATG 2 cut(s) 39, 277
HincII GTYRAC 1 cut(s) 374
HindII GTYRAC 1 cut(s) 374
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 2 cut(s) 33, 374
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 2 cut(s) 33, 374
HpyCH4V TGCA 3 cut(s) 62, 89, 142
Hsp92II CATG 2 cut(s) 39, 277
Kzo9I GATC 1 cut(s) 105
LpnPI CCDG 3 cut(s) 200, 336, 337
Lsp1109I GCAGC 1 cut(s) 154
MaeI CTAG 1 cut(s) 377
MaeIII GTNAC 1 cut(s) 347
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 3 cut(s) 59, 251, 328
MflI RGATCY 1 cut(s) 105
MluCI AATT 2 cut(s) 137, 382
MnlI CCTC 9 cut(s) 129, 171, 194, 204, 218, 222, 252, 290, 320
MslI CAYNNNNRTG 1 cut(s) 272
MspA1I CMGCKG 1 cut(s) 233
NcoI CCATGG 1 cut(s) 273
NdeII GATC 1 cut(s) 105
NlaIII CATG 2 cut(s) 39, 277
NlaIV GGNNCC 1 cut(s) 98
PkrI GCNGC 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 98
PspPI GGNCC 2 cut(s) 97, 277
PsuI RGATCY 1 cut(s) 105
PvuII CAGCTG 1 cut(s) 233
RseI CAYNNNNRTG 1 cut(s) 272
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 1 cut(s) 105
Sau96I GGNCC 2 cut(s) 97, 277
SetI ASST 3 cut(s) 121, 235, 282
SinI GGWCC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 2 cut(s) 137, 382
SsiI CCGC 2 cut(s) 17, 270
SspMI CTAG 1 cut(s) 377
StyI CCWWGG 1 cut(s) 273
TaqI TCGA 4 cut(s) 77, 186, 297, 339
TasI AATT 2 cut(s) 137, 382
TseI GCWGC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 277
XmiI GTMKAC 1 cut(s) 32
XspI CTAG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.