Rh5CG083100

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000510
Physical Location & Seq
Reverse (-)
6363544 .. 6389341
25798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG083100.1

Sequence Viewer

Length: 870 bp
ATGGGTCATCTGACTGCATTCCTCCACATCTCCAACAAACTCGCAGAAAGAGGCCACAAGATCTCCTTCTTTTTACCTCTCAAAACTCAATCCAAGTTGCAGCACTATAATCTCCACCCTCATCTCATTACCTTTATTCCCCTCAATGTCCCTCATGTGGATGGCCTTCCTGTGGGTGCTGAAACCACAGCCGATATTCCTTTCCCTCTGAGTGCTCTTCTTGTCACTGCCATGGACCTCACACGACCTCAAATCGAACAATCACTCCGCCAACTCAAGCCGAGTTTAGTCTTCTTCGATTTCAGCTACTGGTTGCCTGAATTGTTGCATGGACTAGGAAATAACACCAAGTCTCTATATTACTGCACCTTTAGTCCTGCGAGTGTAGGGTACCTGCTAAGCCCGGAGAGGAAACTGAGTGAGAAACCATTGGTCGAATCTGACTATAAGGAGGCTCCATCATCATTCCCTTCGTCTTCAATCAAGTTACAAACCCACGAAGCTCGAGGTCTAGTCAGTCTCACAAACGAGGAATTTGGCCGTGGGCACAGAGGGACGACCAATTCAGTGATGGGGCTTCACCCATTTACACACTCTCTTCGCCCAATGGGTTTTGGTCCAAGCATCGCGACTATGTCAACTACAATCAGCTCCAGAAGAAGAATTTTGGAACATTCATTAAGTTACGTTCTTGATGATTGGATATTGACCGTAGAGGAGGTAGTTGAGCAATGGGGAAAAGGAAGTCAACAGCAAAGCCGGCTCCGAAGAAGCGGATGGACAAGCTTGACACCGTCTTCAGCTGTCCCTTCTGTGGCCATGGCTCCAGTGTCGAATGCCGCATCTTTGTCTGAAGCAATAGACATGTAA

Protein Analysis

289

Amino Acids

32.03

Weight (kDa)

7.95

Isoelectric Point (pI)

60.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 402
Acc65I GGTACC 1 cut(s) 390
AccB1I GGYRCC 1 cut(s) 390
AccII CGCG 1 cut(s) 629
AciI CCGC 3 cut(s) 268, 774, 840
AcoI YGGCCR 2 cut(s) 538, 816
AcsI RAATTY 2 cut(s) 533, 663
AcuI CTGAAG 1 cut(s) 783
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 3 cut(s) 157, 172, 814
AflIII ACRYGT 1 cut(s) 864
AgsI TTSAA 1 cut(s) 480
AloI GAACNNNNNNTCC 2 cut(s) 249, 281
AluBI AGCT 5 cut(s) 306, 503, 651, 786, 803
AluI AGCT 5 cut(s) 306, 503, 651, 786, 803
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 2 cut(s) 357, 524
AlwNI CAGNNNCTG 1 cut(s) 309
Ama87I CYCGRG 1 cut(s) 504
AoxI GGCC 4 cut(s) 52, 163, 538, 816
ApeKI GCWGC 1 cut(s) 100
ApoI RAATTY 2 cut(s) 533, 663
Asp718I GGTACC 1 cut(s) 390
AspS9I GGNCC 2 cut(s) 235, 617
AsuC2I CCSGG 1 cut(s) 404
AsuHPI GGTGA 1 cut(s) 572
AvaI CYCGRG 1 cut(s) 504
AvaII GGWCC 2 cut(s) 235, 617
BaeGI GKGCMC 1 cut(s) 549
BalI TGGCCA 1 cut(s) 818
BanI GGYRCC 1 cut(s) 390
BbsI GAAGAC 3 cut(s) 283, 468, 789
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 112
BccI CCATC 4 cut(s) 155, 466, 565, 771
BceAI ACGGC 1 cut(s) 525
BcnI CCSGG 1 cut(s) 404
BcoDI GTCTC 2 cut(s) 357, 524
BfaI CTAG 2 cut(s) 335, 512
BfuAI ACCTGC 1 cut(s) 402
BglII AGATCT 1 cut(s) 60
BisI GCNGC 2 cut(s) 101, 840
BlpI GCTNAGC 1 cut(s) 398
BlsI GCNGC 2 cut(s) 102, 841
Bme1390I CCNGG 1 cut(s) 404
Bme18I GGWCC 2 cut(s) 235, 617
BmeT110I CYCGRG 1 cut(s) 504
BmgT120I GGNCC 2 cut(s) 235, 617
BmiI GGNNCC 4 cut(s) 392, 456, 764, 825
BmrFI CCNGG 1 cut(s) 404
BmsI GCATC 2 cut(s) 633, 851
BpiI GAAGAC 3 cut(s) 283, 468, 789
BpmI CTGGAG 2 cut(s) 637, 810
Bpu1102I GCTNAGC 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 404
BsaJI CCNNGG 3 cut(s) 231, 541, 819
BsaXI ACNNNNNCTCC 4 cut(s) 47, 77, 249, 279
Bsc4I CCNNNNNNNGG 3 cut(s) 157, 172, 814
Bse118I RCCGGY 1 cut(s) 759
Bse1I ACTGG 2 cut(s) 314, 827
Bse3DI GCAATG 1 cut(s) 737
BseDI CCNNGG 3 cut(s) 231, 541, 819
BseGI GGATG 2 cut(s) 166, 782
BseLI CCNNNNNNNGG 3 cut(s) 157, 172, 814
BseMI GCAATG 1 cut(s) 737
BseMII CTCAG 2 cut(s) 200, 407
BseNI ACTGG 2 cut(s) 314, 827
BseRI GAGGAG 1 cut(s) 731
BseSI GKGCMC 1 cut(s) 549
BseXI GCAGC 1 cut(s) 112
BsgI GTGCAG 1 cut(s) 349
Bsh1236I CGCG 1 cut(s) 629
BshFI GGCC 4 cut(s) 54, 165, 540, 818
BshNI GGYRCC 1 cut(s) 390
BsiHKAI GWGCWC 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 504
BsiSI CCGG 2 cut(s) 404, 760
BslFI GGGAC 3 cut(s) 134, 568, 791
BslI CCNNNNNNNGG 3 cut(s) 157, 172, 814
BsmAI GTCTC 2 cut(s) 357, 524
BsmFI GGGAC 3 cut(s) 134, 568, 791
BsmI GAATGC 2 cut(s) 17, 841
BsnI GGCC 4 cut(s) 54, 165, 540, 818
BsoBI CYCGRG 1 cut(s) 504
Bsp1286I GDGCHC 2 cut(s) 217, 549
Bsp143I GATC 1 cut(s) 60
Bsp1720I GCTNAGC 1 cut(s) 398
Bsp19I CCATGG 2 cut(s) 231, 819
Bsp68I TCGCGA 1 cut(s) 629
BspACI CCGC 3 cut(s) 268, 774, 840
BspANI GGCC 4 cut(s) 54, 165, 540, 818
BspCNI CTCAG 2 cut(s) 201, 408
BspFNI CGCG 1 cut(s) 629
BspLI GGNNCC 4 cut(s) 392, 456, 764, 825
BspMI ACCTGC 1 cut(s) 402
BspQI GCTCTTC 1 cut(s) 222
BspT107I GGYRCC 1 cut(s) 390
BsrDI GCAATG 1 cut(s) 737
BsrFI RCCGGY 1 cut(s) 759
BsrI ACTGG 2 cut(s) 314, 827
BssAI RCCGGY 1 cut(s) 759
BssECI CCNNGG 3 cut(s) 231, 541, 819
BssMI GATC 1 cut(s) 60
BssT1I CCWWGG 2 cut(s) 231, 819
Bst4CI ACNGT 2 cut(s) 712, 795
Bst6I CTCTTC 2 cut(s) 222, 603
BstC8I GCNNGC 1 cut(s) 761
BstDEI CTNAG 3 cut(s) 209, 398, 416
BstDSI CCRYGG 3 cut(s) 231, 541, 819
BstF5I GGATG 2 cut(s) 166, 782
BstFNI CGCG 1 cut(s) 629
BstKTI GATC 1 cut(s) 63
BstMAI GTCTC 2 cut(s) 357, 524
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 760
BstNSI RCATGY 1 cut(s) 868
BstSCI CCNGG 1 cut(s) 402
BstSLI GKGCMC 1 cut(s) 549
BstUI CGCG 1 cut(s) 629
BstV1I GCAGC 1 cut(s) 112
BstV2I GAAGAC 3 cut(s) 283, 468, 789
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BsuRI GGCC 4 cut(s) 54, 165, 540, 818
BtgI CCRYGG 3 cut(s) 231, 541, 819
BtgZI GCGATG 1 cut(s) 610
BtsCI GGATG 2 cut(s) 166, 782
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 3 cut(s) 225, 573, 834
BtuMI TCGCGA 1 cut(s) 629
BveI ACCTGC 1 cut(s) 402
Cac8I GCNNGC 1 cut(s) 761
CaiI CAGNNNCTG 1 cut(s) 309
Cfr10I RCCGGY 1 cut(s) 759
Cfr13I GGNCC 2 cut(s) 235, 617
Csp6I GTAC 1 cut(s) 391
CviAII CATG 5 cut(s) 155, 232, 329, 820, 865
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 3 cut(s) 209, 398, 416
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
EaeI YGGCCR 2 cut(s) 538, 816
Eam1104I CTCTTC 2 cut(s) 222, 603
EarI CTCTTC 2 cut(s) 222, 603
EciI GGCGGA 1 cut(s) 257
Eco130I CCWWGG 2 cut(s) 231, 819
Eco47I GGWCC 2 cut(s) 235, 617
Eco57I CTGAAG 1 cut(s) 783
Eco88I CYCGRG 1 cut(s) 504
EcoT14I CCWWGG 2 cut(s) 231, 819
ErhI CCWWGG 2 cut(s) 231, 819
FaeI CATG 5 cut(s) 158, 235, 332, 823, 868
FaiI YATR 9 cut(s) 108, 156, 233, 330, 358, 447, 635, 821, 866
FalI AAGNNNNNCTT 2 cut(s) 50, 82
FaqI GGGAC 3 cut(s) 134, 568, 791
FatI CATG 5 cut(s) 154, 231, 328, 819, 864
Fnu4HI GCNGC 2 cut(s) 101, 840
FokI GGATG 2 cut(s) 173, 789
Fsp4HI GCNGC 2 cut(s) 101, 840
FspBI CTAG 2 cut(s) 335, 512
GluI GCNGC 2 cut(s) 101, 840
GsuI CTGGAG 2 cut(s) 637, 810
HaeIII GGCC 4 cut(s) 54, 165, 540, 818
HapII CCGG 2 cut(s) 404, 760
Hin1II CATG 5 cut(s) 158, 235, 332, 823, 868
HincII GTYRAC 2 cut(s) 639, 749
HindII GTYRAC 2 cut(s) 639, 749
HindIII AAGCTT 1 cut(s) 784
HinfI GANTC 1 cut(s) 437
HpaII CCGG 2 cut(s) 404, 760
HphI GGTGA 1 cut(s) 572
Hpy166II GTNNAC 2 cut(s) 639, 749
Hpy188I TCNGA 5 cut(s) 12, 210, 442, 767, 853
Hpy188III TCNNGA 3 cut(s) 628, 654, 692
Hpy8I GTNNAC 2 cut(s) 639, 749
HpyAV CCTTC 4 cut(s) 76, 176, 480, 819
HpyCH4III ACNGT 2 cut(s) 712, 795
HpyCH4IV ACGT 1 cut(s) 687
HpyCH4V TGCA 4 cut(s) 17, 100, 328, 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 760
HpyF3I CTNAG 3 cut(s) 209, 398, 416
HpySE526I ACGT 1 cut(s) 687
Hsp92II CATG 5 cut(s) 158, 235, 332, 823, 868
KpnI GGTACC 1 cut(s) 394
KroI GCCGGC 1 cut(s) 759
KroNI GCCGGC 1 cut(s) 761
Kzo9I GATC 1 cut(s) 60
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 4 cut(s) 460, 656, 768, 829
LpnPI CCDG 9 cut(s) 183, 295, 330, 390, 407, 417, 667, 773, 840
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 2 cut(s) 633, 851
MaeI CTAG 2 cut(s) 335, 512
MaeII ACGT 1 cut(s) 687
MaeIII GTNAC 3 cut(s) 223, 486, 683
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 9 cut(s) 209, 283, 286, 468, 590, 669, 672, 780, 789
MflI RGATCY 1 cut(s) 60
MhlI GDGCHC 2 cut(s) 217, 549
MlsI TGGCCA 1 cut(s) 818
MluCI AATT 4 cut(s) 320, 533, 562, 663
MluNI TGGCCA 1 cut(s) 818
MmeI TCCRAC 1 cut(s) 57
Mox20I TGGCCA 1 cut(s) 818
MroNI GCCGGC 1 cut(s) 759
MscI TGGCCA 1 cut(s) 818
MseI TTAA 1 cut(s) 680
MslI CAYNNNNRTG 2 cut(s) 159, 230
Msp20I TGGCCA 1 cut(s) 818
MspA1I CMGCKG 1 cut(s) 803
MspI CCGG 2 cut(s) 404, 760
MspR9I CCNGG 1 cut(s) 404
Mva1269I GAATGC 2 cut(s) 17, 841
MvnI CGCG 1 cut(s) 629
MwoI GCNNNNNNNGC 1 cut(s) 760
NaeI GCCGGC 1 cut(s) 761
NciI CCSGG 1 cut(s) 404
NcoI CCATGG 2 cut(s) 231, 819
NdeII GATC 1 cut(s) 60
NgoMIV GCCGGC 1 cut(s) 759
NlaIII CATG 5 cut(s) 158, 235, 332, 823, 868
NlaIV GGNNCC 4 cut(s) 392, 456, 764, 825
NmeAIII GCCGAG 1 cut(s) 306
NmuCI GTSAC 1 cut(s) 223
NruI TCGCGA 1 cut(s) 629
NspI RCATGY 1 cut(s) 868
PaeR7I CTCGAG 1 cut(s) 504
PciI ACATGT 1 cut(s) 864
PciSI GCTCTTC 1 cut(s) 222
PctI GAATGC 2 cut(s) 17, 841
PdiI GCCGGC 1 cut(s) 761
PfeI GAWTC 1 cut(s) 437
PflFI GACNNNGTC 2 cut(s) 634, 793
PkrI GCNGC 2 cut(s) 102, 841
PscI ACATGT 1 cut(s) 864
PspN4I GGNNCC 4 cut(s) 392, 456, 764, 825
PspPI GGNCC 2 cut(s) 235, 617
PspXI VCTCGAGB 1 cut(s) 504
PstNI CAGNNNCTG 1 cut(s) 309
PsuI RGATCY 1 cut(s) 60
PsyI GACNNNGTC 2 cut(s) 634, 793
PvuII CAGCTG 1 cut(s) 803
RruI TCGCGA 1 cut(s) 629
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
RseI CAYNNNNRTG 2 cut(s) 159, 230
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 680
SatI GCNGC 2 cut(s) 101, 840
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 2 cut(s) 235, 617
ScrFI CCNGG 1 cut(s) 404
SduI GDGCHC 2 cut(s) 217, 549
SfaNI GCATC 2 cut(s) 633, 851
Sfr274I CTCGAG 1 cut(s) 504
SinI GGWCC 2 cut(s) 235, 617
SlaI CTCGAG 1 cut(s) 504
SmiMI CAYNNNNRTG 2 cut(s) 159, 230
SmlI CTYRAG 2 cut(s) 275, 504
SmoI CTYRAG 2 cut(s) 275, 504
Sse9I AATT 4 cut(s) 320, 533, 562, 663
SsiI CCGC 3 cut(s) 268, 774, 840
SspMI CTAG 2 cut(s) 335, 512
StyD4I CCNGG 1 cut(s) 402
StyI CCWWGG 2 cut(s) 231, 819
TaaI ACNGT 2 cut(s) 712, 795
TaiI ACGT 1 cut(s) 690
TaqI TCGA 5 cut(s) 255, 297, 435, 505, 833
TasI AATT 4 cut(s) 320, 533, 562, 663
TauI GCSGC 1 cut(s) 842
TfiI GAWTC 1 cut(s) 437
Tru1I TTAA 1 cut(s) 680
Tru9I TTAA 1 cut(s) 680
TscAI CASTG 3 cut(s) 232, 573, 834
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 666
TspRI CASTG 3 cut(s) 232, 573, 834
Tth111I GACNNNGTC 2 cut(s) 634, 793
VpaK11BI GGWCC 2 cut(s) 235, 617
XapI RAATTY 2 cut(s) 533, 663
XceI RCATGY 1 cut(s) 868
XcmI CCANNNNNNNNNTGG 1 cut(s) 568
XhoI CTCGAG 1 cut(s) 504
XspI CTAG 2 cut(s) 335, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.