Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000510

Physical Location & Seq

Genomic Coordinates Forward (+)

5757829 .. 5758215

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG070900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTATCCATGGTTTGCTATGGGGCATTTGACTGCATATCTTCACATCTCGAACAAACTAGCAGAGAGAGGCCACAAGATCTCCTTCTTTTTACCTCTCAAAACTCAATCCAAGTTGCAGCACTATAATCTCCACCCTCATCTCATTACCTTTATTCCCCTCAATGTCCCTCATGTGGATGGCCTTCCTGTGGGTGCTGAAACCACAGCCGACATTCCTCTCTCTTTGGGCTCCCTTCTCGCTACCGCCATGGACCTCACTCGACCCCAAATCGAACAATCTCTCCTCAAACTCAAGCCTGATTTTGTGTTCTTCGATTTTAGTCACTGGTTGCCTGCATTGTTGCGTCAACTAGGCAATAACATTAAGTCATTACTGGGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00942 map00942

Pfam Domains

Protein Families

UDPGT

Protein Analysis

128

Amino Acids

14.45

Weight (kDa)

9.05

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000510)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica	MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica	Prupe.4G054800_v2.0.a1
pyrus_communis	pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis	RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata	RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora	Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa	Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha	Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana	Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	246
AfiI	CCNNNNNNNGG	2 cut(s)	175, 190
AloI	GAACNNNNNNTCC	2 cut(s)	267, 299
AoxI	GGCC	2 cut(s)	70, 181
ApeKI	GCWGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	1 cut(s)	173
BciVI	GTATCC	1 cut(s)	15
BfaI	CTAG	2 cut(s)	59, 353
BfuI	GTATCC	1 cut(s)	15
BglII	AGATCT	1 cut(s)	78
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	232
BmrI	ACTGGG	1 cut(s)	386
BmuI	ACTGGG	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	8, 249
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 267, 297
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 190
Bse1I	ACTGG	2 cut(s)	332, 381
BseDI	CCNNGG	2 cut(s)	8, 249
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	2 cut(s)	175, 190
BseNI	ACTGG	2 cut(s)	332, 381
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	130
BshFI	GGCC	2 cut(s)	72, 183
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	2 cut(s)	175, 190
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	72, 183
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	1 cut(s)	78
Bsp19I	CCATGG	2 cut(s)	8, 249
BspACI	CCGC	1 cut(s)	246
BspANI	GGCC	2 cut(s)	72, 183
BspLI	GGNNCC	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	332, 381
BssECI	CCNNGG	2 cut(s)	8, 249
BssMI	GATC	1 cut(s)	78
BssT1I	CCWWGG	2 cut(s)	8, 249
BstC8I	GCNNGC	1 cut(s)	336
BstDSI	CCRYGG	2 cut(s)	8, 249
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	72, 183
BtgI	CCRYGG	2 cut(s)	8, 249
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	253
CseI	GACGC	1 cut(s)	335
CviAII	CATG	3 cut(s)	9, 173, 250
CviJI	RGCY	5 cut(s)	72, 183, 209, 231, 298
CviKI_1	RGCY	5 cut(s)	72, 183, 209, 231, 298
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
Eco130I	CCWWGG	2 cut(s)	8, 249
Eco24I	GRGCYC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	253
EcoT14I	CCWWGG	2 cut(s)	8, 249
EcoT38I	GRGCYC	1 cut(s)	233
ErhI	CCWWGG	2 cut(s)	8, 249
FaeI	CATG	3 cut(s)	12, 176, 253
FaiI	YATR	6 cut(s)	10, 20, 37, 126, 174, 251
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	3 cut(s)	8, 172, 249
Fnu4HI	GCNGC	1 cut(s)	119
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	2 cut(s)	59, 353
GluI	GCNGC	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	72, 183
HgaI	GACGC	1 cut(s)	335
Hin1II	CATG	3 cut(s)	12, 176, 253
HincII	GTYRAC	1 cut(s)	350
HindII	GTYRAC	1 cut(s)	350
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	1 cut(s)	350
HpyAV	CCTTC	3 cut(s)	94, 194, 245
HpyCH4V	TGCA	3 cut(s)	35, 118, 338
Hsp92II	CATG	3 cut(s)	12, 176, 253
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	5 cut(s)	201, 312, 313, 348, 362
Lsp1109I	GCAGC	1 cut(s)	130
MaeI	CTAG	2 cut(s)	59, 353
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	2 cut(s)	32, 304
MflI	RGATCY	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	1 cut(s)	382
MnlI	CCTC	8 cut(s)	62, 105, 147, 170, 180, 228, 266, 296
MseI	TTAA	2 cut(s)	366, 385
MslI	CAYNNNNRTG	1 cut(s)	177
NcoI	CCATGG	2 cut(s)	8, 249
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	3 cut(s)	12, 176, 253
NlaIV	GGNNCC	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	323
PkrI	GCNGC	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	366, 385
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	3 cut(s)	97, 152, 258
SinI	GGWCC	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	1 cut(s)	382
SsiI	CCGC	1 cut(s)	246
SspMI	CTAG	2 cut(s)	59, 353
StyI	CCWWGG	2 cut(s)	8, 249
TaqI	TCGA	4 cut(s)	50, 262, 273, 315
TasI	AATT	1 cut(s)	382
Tru1I	TTAA	2 cut(s)	366, 385
Tru9I	TTAA	2 cut(s)	366, 385
TscAI	CASTG	1 cut(s)	332
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	323
TspRI	CASTG	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	253
XspI	CTAG	2 cut(s)	59, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.