Rroxscaffold_1G00067290

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000510
Physical Location & Seq
Reverse (-)
88651142 .. 88652510
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00067290.1

Sequence Viewer

Length: 1008 bp
ATGAGCGACCAAACTCTGCATATTGCTATGTATCCATGGTTTGCTATGGGGCATTTGACTGTCTTCACATCTCGAACAAACTCGCAGAAAGGGGCCACAAGATCTCCTTCTTTTTACCTCTCAAAACTCAATCCAAGTTGCAGCACTATAATCTCCACCCTCATCTCATTACATTCATTCCCCTCGATGTCCCCTCATGTCGATGGCCTCCTTCTGGGGACTGAAACCACAGCTGACATTCCTCTCTCTTTAGGCTCTCTTCTTGCCACCGCCATGGACCTCACCCGACCCCAAATCGAACAATATCTCCTCAAACTCAAGCCTGATTTTGTGTTCTTCGATTTTAGTTACTGGTTGCCTGATTTGTTGCGTCAACTAGGCAATAAGATTCAGTCAGTATGTTACTGGCTAGTTGATCCTGCAAGTGTGTGGTACCTGCTAAACCGAGGCCTGTCGAGAAAGAAAGCATTGGATGAAGTTGATCCTGTACACCCTTTGCTGTGTTTCAGTAGTTCATTCTCAATCAAGTTACAGACTCACGAAGCTCGAGCTTTTGATGCCTTGGAAAACAAGGAAGTGGAAGGCTTTGAATTGCGTCTAAAAGGAAAAGTGGTGGTTTATGGGGGTTGGGTTCAGCAGCCTTTGATACTGAAGCGCCCATCTGTGGGTTGCTTTGTGACTCACTGCGGTTCGGGGTCTTTAAATGAGGCGTTACTGAATGAGTGCCAACTGGTGCTTCTACCACATGTGGGAGATCAGATTATCAACGAGAGAATCATGAGTGGTGATTTGAAGGTGGGAGTTGAAGTTGAAAAAGGAGATGAAGATGGATTGTTCACCAAGGAAGGTGTCTGTAAAGCTGTGAAAGCAGTGATGGTTGAGGACAGTGAGGTGGGAAAGGAGGTGAGGACCAACCATGCTAAGTGGAGGGAGTTCTTCTCCAATAAAGAGCTTGAGAGCTCATATATTGATGGTTTTGTGCAGAAGCTGCATGAACTGCTGGGATGA

Protein Analysis

335

Amino Acids

37.5

Weight (kDa)

5.95

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 209 - 295 6.9e-09 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 444
Acc65I GGTACC 1 cut(s) 432
AccB1I GGYRCC 1 cut(s) 432
AciI CCGC 2 cut(s) 270, 687
AclWI GGATC 2 cut(s) 410, 476
AcuI CTGAAG 1 cut(s) 671
AfaI GTAC 2 cut(s) 434, 489
AfiI CCNNNNNNNGG 4 cut(s) 214, 664, 665, 749
AflIII ACRYGT 1 cut(s) 745
AgsI TTSAA 4 cut(s) 590, 793, 806, 812
AjuI GAANNNNNNNTTGG 2 cut(s) 720, 752
AloI GAACNNNNNNTCC 2 cut(s) 291, 323
AluBI AGCT 7 cut(s) 233, 545, 551, 860, 952, 960, 988
AluI AGCT 7 cut(s) 233, 545, 551, 860, 952, 960, 988
Alw21I GWGCWC 1 cut(s) 962
AlwI GGATC 2 cut(s) 410, 476
AlwNI CAGNNNCTG 1 cut(s) 988
Ama87I CYCGRG 1 cut(s) 546
AoxI GGCC 3 cut(s) 93, 205, 448
ApeKI GCWGC 3 cut(s) 141, 637, 988
Asp718I GGTACC 1 cut(s) 432
AspLEI GCGC 1 cut(s) 657
AspS9I GGNCC 3 cut(s) 93, 277, 909
AsuHPI GGTGA 4 cut(s) 274, 797, 829, 916
AvaI CYCGRG 1 cut(s) 546
AvaII GGWCC 2 cut(s) 277, 909
BanI GGYRCC 1 cut(s) 432
BanII GRGCYC 1 cut(s) 962
BbsI GAAGAC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 962
BbvI GCAGC 3 cut(s) 153, 649, 975
BccI CCATC 5 cut(s) 197, 667, 821, 868, 965
BciVI GTATCC 1 cut(s) 42
BfaI CTAG 2 cut(s) 377, 410
BfoI RGCGCY 1 cut(s) 658
BfuAI ACCTGC 1 cut(s) 444
BfuI GTATCC 1 cut(s) 42
BglII AGATCT 1 cut(s) 101
BisI GCNGC 3 cut(s) 142, 638, 989
BlsI GCNGC 3 cut(s) 143, 639, 990
Bme18I GGWCC 2 cut(s) 277, 909
BmeT110I CYCGRG 1 cut(s) 546
BmgT120I GGNCC 3 cut(s) 93, 277, 909
BmiI GGNNCC 2 cut(s) 94, 434
BmsI GCATC 1 cut(s) 547
BpiI GAAGAC 1 cut(s) 55
BplI GAGNNNNNCTC 2 cut(s) 923, 955
BpuEI CTTGAG 2 cut(s) 302, 974
BsaJI CCNNGG 5 cut(s) 35, 273, 445, 561, 840
BsaXI ACNNNNNCTCC 6 cut(s) 88, 118, 291, 321, 792, 822
Bsc4I CCNNNNNNNGG 4 cut(s) 214, 664, 665, 749
Bse1I ACTGG 3 cut(s) 356, 410, 735
BseDI CCNNGG 5 cut(s) 35, 273, 445, 561, 840
BseGI GGATG 1 cut(s) 478
BseLI CCNNNNNNNGG 4 cut(s) 214, 664, 665, 749
BseNI ACTGG 3 cut(s) 356, 410, 735
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 3 cut(s) 153, 649, 975
BseYI CCCAGC 1 cut(s) 1000
BsgI GTGCAG 1 cut(s) 1001
BshFI GGCC 3 cut(s) 95, 207, 450
BshNI GGYRCC 1 cut(s) 432
BsiHKAI GWGCWC 1 cut(s) 962
BsiHKCI CYCGRG 1 cut(s) 546
BslFI GGGAC 2 cut(s) 175, 232
BslI CCNNNNNNNGG 4 cut(s) 214, 664, 665, 749
BsmFI GGGAC 2 cut(s) 175, 232
BsnI GGCC 3 cut(s) 95, 207, 450
BsoBI CYCGRG 1 cut(s) 546
Bsp1286I GDGCHC 1 cut(s) 962
Bsp1407I TGTACA 1 cut(s) 487
Bsp143I GATC 4 cut(s) 101, 415, 481, 754
Bsp19I CCATGG 2 cut(s) 35, 273
BspACI CCGC 2 cut(s) 270, 687
BspANI GGCC 3 cut(s) 95, 207, 450
BspHI TCATGA 1 cut(s) 777
BspLI GGNNCC 2 cut(s) 94, 434
BspMI ACCTGC 1 cut(s) 444
BspPI GGATC 2 cut(s) 410, 476
BspT107I GGYRCC 1 cut(s) 432
BsrGI TGTACA 1 cut(s) 487
BsrI ACTGG 3 cut(s) 356, 410, 735
BssECI CCNNGG 5 cut(s) 35, 273, 445, 561, 840
BssMI GATC 4 cut(s) 101, 415, 481, 754
BssT1I CCWWGG 4 cut(s) 35, 273, 561, 840
Bst4CI ACNGT 2 cut(s) 61, 887
Bst6I CTCTTC 1 cut(s) 264
BstAPI GCANNNNNTGC 2 cut(s) 988, 997
BstAUI TGTACA 1 cut(s) 487
BstDEI CTNAG 1 cut(s) 921
BstDSI CCRYGG 2 cut(s) 35, 273
BstF5I GGATG 1 cut(s) 478
BstH2I RGCGCY 1 cut(s) 658
BstHHI GCGC 1 cut(s) 657
BstKTI GATC 4 cut(s) 104, 418, 484, 757
BstMBI GATC 4 cut(s) 101, 415, 481, 754
BstMWI GCNNNNNNNGC 4 cut(s) 557, 866, 988, 997
BstNSI RCATGY 1 cut(s) 749
BstV1I GCAGC 3 cut(s) 153, 649, 975
BstV2I GAAGAC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 101
BstXI CCANNNNNNTGG 1 cut(s) 274
BstYI RGATCY 1 cut(s) 101
BsuI GTATCC 1 cut(s) 42
BsuRI GGCC 3 cut(s) 95, 207, 450
BtgI CCRYGG 2 cut(s) 35, 273
BtsCI GGATG 1 cut(s) 478
BtsI GCAGTG 2 cut(s) 682, 876
BtsIMutI CAGTG 3 cut(s) 682, 876, 892
BveI ACCTGC 1 cut(s) 444
CaiI CAGNNNCTG 1 cut(s) 988
CciI TCATGA 1 cut(s) 777
CfoI GCGC 1 cut(s) 657
Cfr13I GGNCC 3 cut(s) 93, 277, 909
CseI GACGC 2 cut(s) 359, 584
Csp6I GTAC 2 cut(s) 433, 488
CviAII CATG 7 cut(s) 36, 197, 274, 746, 778, 917, 992
CviQI GTAC 2 cut(s) 433, 488
DdeI CTNAG 1 cut(s) 921
DpnI GATC 4 cut(s) 103, 417, 483, 756
DpnII GATC 4 cut(s) 101, 415, 481, 754
DraI TTTAAA 1 cut(s) 702
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Ecl136II GAGCTC 1 cut(s) 960
Eco130I CCWWGG 4 cut(s) 35, 273, 561, 840
Eco147I AGGCCT 1 cut(s) 450
Eco24I GRGCYC 1 cut(s) 962
Eco47I GGWCC 2 cut(s) 277, 909
Eco53kI GAGCTC 1 cut(s) 960
Eco57I CTGAAG 1 cut(s) 671
Eco88I CYCGRG 1 cut(s) 546
EcoICRI GAGCTC 1 cut(s) 960
EcoT14I CCWWGG 4 cut(s) 35, 273, 561, 840
EcoT38I GRGCYC 1 cut(s) 962
ErhI CCWWGG 4 cut(s) 35, 273, 561, 840
FaeI CATG 7 cut(s) 39, 200, 277, 749, 781, 920, 995
FalI AAGNNNNNCTT 2 cut(s) 91, 123
FaqI GGGAC 2 cut(s) 175, 232
FatI CATG 7 cut(s) 35, 196, 273, 745, 777, 916, 991
Fnu4HI GCNGC 3 cut(s) 142, 638, 989
FokI GGATG 1 cut(s) 485
FriOI GRGCYC 1 cut(s) 962
Fsp4HI GCNGC 3 cut(s) 142, 638, 989
FspBI CTAG 2 cut(s) 377, 410
GlaI GCGC 1 cut(s) 656
GluI GCNGC 3 cut(s) 142, 638, 989
GsaI CCCAGC 1 cut(s) 1004
HaeII RGCGCY 1 cut(s) 658
HaeIII GGCC 3 cut(s) 95, 207, 450
HgaI GACGC 2 cut(s) 359, 584
HhaI GCGC 1 cut(s) 657
Hin1II CATG 7 cut(s) 39, 200, 277, 749, 781, 920, 995
Hin6I GCGC 1 cut(s) 655
HinP1I GCGC 1 cut(s) 655
HincII GTYRAC 1 cut(s) 374
HindII GTYRAC 1 cut(s) 374
HinfI GANTC 4 cut(s) 388, 535, 679, 774
HphI GGTGA 4 cut(s) 274, 797, 829, 916
Hpy166II GTNNAC 3 cut(s) 374, 490, 837
Hpy188I TCNGA 1 cut(s) 759
Hpy188III TCNNGA 4 cut(s) 72, 456, 539, 778
Hpy8I GTNNAC 3 cut(s) 374, 490, 837
HpyAV CCTTC 5 cut(s) 117, 221, 575, 787, 839
HpyCH4III ACNGT 2 cut(s) 61, 887
HpyCH4V TGCA 5 cut(s) 19, 141, 422, 982, 991
HpyF10VI GCNNNNNNNGC 4 cut(s) 557, 866, 988, 997
HpyF3I CTNAG 1 cut(s) 921
Hsp92II CATG 7 cut(s) 39, 200, 277, 749, 781, 920, 995
HspAI GCGC 1 cut(s) 655
KpnI GGTACC 1 cut(s) 436
Kzo9I GATC 4 cut(s) 101, 415, 481, 754
Lsp1109I GCAGC 3 cut(s) 153, 649, 975
LweI GCATC 1 cut(s) 547
MaeI CTAG 2 cut(s) 377, 410
MaeIII GTNAC 5 cut(s) 347, 401, 528, 676, 711
MalI GATC 4 cut(s) 103, 417, 483, 756
MboI GATC 4 cut(s) 101, 415, 481, 754
MboII GAAGA 5 cut(s) 55, 251, 328, 836, 928
MflI RGATCY 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 962
MluCI AATT 1 cut(s) 590
MlyI GAGTC 2 cut(s) 529, 673
MseI TTAA 1 cut(s) 701
MslI CAYNNNNRTG 2 cut(s) 201, 272
MspA1I CMGCKG 1 cut(s) 233
MwoI GCNNNNNNNGC 4 cut(s) 557, 866, 988, 997
NcoI CCATGG 2 cut(s) 35, 273
NdeII GATC 4 cut(s) 101, 415, 481, 754
NlaIII CATG 7 cut(s) 39, 200, 277, 749, 781, 920, 995
NlaIV GGNNCC 2 cut(s) 94, 434
NmuCI GTSAC 1 cut(s) 676
NspI RCATGY 1 cut(s) 749
PaeR7I CTCGAG 1 cut(s) 546
PagI TCATGA 1 cut(s) 777
PceI AGGCCT 1 cut(s) 450
PciI ACATGT 1 cut(s) 745
PfeI GAWTC 2 cut(s) 388, 774
PkrI GCNGC 3 cut(s) 143, 639, 990
PleI GAGTC 2 cut(s) 529, 673
PpsI GAGTC 2 cut(s) 529, 673
PscI ACATGT 1 cut(s) 745
Psp124BI GAGCTC 1 cut(s) 962
PspFI CCCAGC 1 cut(s) 1000
PspN4I GGNNCC 2 cut(s) 94, 434
PspPI GGNCC 3 cut(s) 93, 277, 909
PspXI VCTCGAGB 1 cut(s) 546
PstNI CAGNNNCTG 1 cut(s) 988
PsuI RGATCY 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 233
RsaI GTAC 2 cut(s) 434, 489
RsaNI GTAC 2 cut(s) 433, 488
RseI CAYNNNNRTG 2 cut(s) 201, 272
SacI GAGCTC 1 cut(s) 962
SaqAI TTAA 1 cut(s) 701
SatI GCNGC 3 cut(s) 142, 638, 989
Sau3AI GATC 4 cut(s) 101, 415, 481, 754
Sau96I GGNCC 3 cut(s) 93, 277, 909
SchI GAGTC 2 cut(s) 529, 673
SduI GDGCHC 1 cut(s) 962
SfaNI GCATC 1 cut(s) 547
Sfr274I CTCGAG 1 cut(s) 546
SinI GGWCC 2 cut(s) 277, 909
SlaI CTCGAG 1 cut(s) 546
SmiMI CAYNNNNRTG 2 cut(s) 201, 272
SmlI CTYRAG 3 cut(s) 317, 546, 953
SmoI CTYRAG 3 cut(s) 317, 546, 953
Sse9I AATT 1 cut(s) 590
SseBI AGGCCT 1 cut(s) 450
SsiI CCGC 2 cut(s) 270, 687
SspMI CTAG 2 cut(s) 377, 410
SstI GAGCTC 1 cut(s) 962
StuI AGGCCT 1 cut(s) 450
StyI CCWWGG 4 cut(s) 35, 273, 561, 840
TaaI ACNGT 2 cut(s) 61, 887
TaqI TCGA 7 cut(s) 73, 185, 201, 297, 339, 455, 547
TasI AATT 1 cut(s) 590
TatI WGTACW 1 cut(s) 487
TfiI GAWTC 2 cut(s) 388, 774
Tru1I TTAA 1 cut(s) 701
Tru9I TTAA 1 cut(s) 701
TscAI CASTG 3 cut(s) 689, 876, 892
TseFI GTSAC 1 cut(s) 676
TseI GCWGC 3 cut(s) 141, 637, 988
Tsp45I GTSAC 1 cut(s) 676
TspDTI ATGAA 5 cut(s) 165, 489, 504, 837, 1008
TspRI CASTG 3 cut(s) 689, 876, 892
VpaK11BI GGWCC 2 cut(s) 277, 909
XceI RCATGY 1 cut(s) 749
XhoI CTCGAG 1 cut(s) 546
XspI CTAG 2 cut(s) 377, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.