RchiOBHm_Chr5g0009631

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000510
Physical Location & Seq
Forward (+)
6389126 .. 6389461
336 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29050

Sequence Viewer

Length: 336 bp
ATGACTCACTGTGGTTCTGGGTCTTTAAACGAGGCGTTGCTGAATGAGTGCCAATTGGTGTTTCTGCCAAATTGGGCTGATCAGGTAATCAACGCGAGAATGATGAGCGATGATTTGAAAGTTGGAGTTGAAGTTGAGAAAGGGGATGAAGATGGATTGTTCACCAAGGAAGCGGTTTGCAAAGCTGTGAAAGCTATGATGGATGAGAACAGTGAGGTTGGAAAGGAGGTGAGGTCCAACCATGCTAAGTGGAGGGAGTTCTTCTCCAATAAAGGAATTGAGAGCTTATACATTGATGGTTTTCTGCAGAAGCTGCATGAAGTACTGCTGGGATGA

Protein Analysis

111

Amino Acids

12.44

Weight (kDa)

4.88

Isoelectric Point (pI)

25.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 95
AciI CCGC 1 cut(s) 173
AfaI GTAC 1 cut(s) 324
AgsI TTSAA 2 cut(s) 118, 131
AjuI GAANNNNNNNTTGG 2 cut(s) 45, 77
AluBI AGCT 4 cut(s) 185, 194, 285, 313
AluI AGCT 4 cut(s) 185, 194, 285, 313
AlwNI CAGNNNCTG 1 cut(s) 313
ApeKI GCWGC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 234
AsuHPI GGTGA 2 cut(s) 154, 241
AvaII GGWCC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 300
BccI CCATC 3 cut(s) 146, 193, 290
BclI TGATCA 1 cut(s) 79
BfmI CTRYAG 1 cut(s) 305
BisI GCNGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 315
BmcAI AGTACT 1 cut(s) 324
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 234
BplI GAGNNNNNCTC 2 cut(s) 248, 280
BsaJI CCNNGG 1 cut(s) 165
BsaXI ACNNNNNCTCC 4 cut(s) 117, 147, 218, 248
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 2 cut(s) 151, 208
BseXI GCAGC 1 cut(s) 300
BseYI CCCAGC 1 cut(s) 328
Bsh1236I CGCG 1 cut(s) 95
Bsp143I GATC 1 cut(s) 79
BspACI CCGC 1 cut(s) 173
BspFNI CGCG 1 cut(s) 95
BspMAI CTGCAG 1 cut(s) 309
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 1 cut(s) 79
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 11, 212
BstAPI GCANNNNNTGC 1 cut(s) 313
BstDEI CTNAG 1 cut(s) 246
BstF5I GGATG 2 cut(s) 151, 208
BstFNI CGCG 1 cut(s) 95
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 2 cut(s) 191, 313
BstSFI CTRYAG 1 cut(s) 305
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 300
BtgZI GCGATG 1 cut(s) 123
BtsCI GGATG 2 cut(s) 151, 208
BtsIMutI CAGTG 2 cut(s) 7, 217
CaiI CAGNNNCTG 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 234
Csp6I GTAC 1 cut(s) 323
CviAII CATG 2 cut(s) 242, 317
CviJI RGCY 5 cut(s) 77, 185, 194, 285, 313
CviKI_1 RGCY 5 cut(s) 77, 185, 194, 285, 313
CviQI GTAC 1 cut(s) 323
DdeI CTNAG 1 cut(s) 246
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
DraI TTTAAA 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 165
Eco47I GGWCC 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 2 cut(s) 245, 320
FaiI YATR 4 cut(s) 197, 243, 289, 318
FatI CATG 2 cut(s) 241, 316
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 314
FokI GGATG 2 cut(s) 158, 215
Fsp4HI GCNGC 1 cut(s) 314
GluI GCNGC 1 cut(s) 314
GsaI CCCAGC 1 cut(s) 332
Hin1II CATG 2 cut(s) 245, 320
HinfI GANTC 1 cut(s) 4
HphI GGTGA 2 cut(s) 154, 241
Hpy166II GTNNAC 1 cut(s) 162
Hpy8I GTNNAC 1 cut(s) 162
HpyCH4III ACNGT 2 cut(s) 11, 212
HpyCH4V TGCA 3 cut(s) 180, 307, 316
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 313
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 2 cut(s) 245, 320
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 1 cut(s) 79
LpnPI CCDG 3 cut(s) 3, 68, 314
Lsp1109I GCAGC 1 cut(s) 300
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 2 cut(s) 161, 253
MfeI CAATTG 1 cut(s) 53
MluCI AATT 3 cut(s) 53, 70, 276
MmeI TCCRAC 3 cut(s) 103, 199, 261
MnlI CCTC 5 cut(s) 25, 208, 220, 225, 246
MseI TTAA 1 cut(s) 26
MunI CAATTG 1 cut(s) 53
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 191, 313
NdeII GATC 1 cut(s) 79
NlaIII CATG 2 cut(s) 245, 320
PkrI GCNGC 1 cut(s) 315
PspFI CCCAGC 1 cut(s) 328
PspPI GGNCC 1 cut(s) 234
PstI CTGCAG 1 cut(s) 309
PstNI CAGNNNCTG 1 cut(s) 313
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 1 cut(s) 314
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 1 cut(s) 234
ScaI AGTACT 1 cut(s) 324
SetI ASST 8 cut(s) 87, 187, 196, 219, 231, 236, 287, 315
SfcI CTRYAG 1 cut(s) 305
SgeI CNNG 8 cut(s) 30, 43, 95, 106, 108, 178, 254, 329
SinI GGWCC 1 cut(s) 234
Sse9I AATT 3 cut(s) 53, 70, 276
SsiI CCGC 1 cut(s) 173
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 2 cut(s) 11, 212
TasI AATT 3 cut(s) 53, 70, 276
TatI WGTACW 1 cut(s) 322
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 2 cut(s) 14, 217
TseI GCWGC 1 cut(s) 313
TspDTI ATGAA 2 cut(s) 162, 333
TspRI CASTG 2 cut(s) 14, 217
VpaK11BI GGWCC 1 cut(s) 234
ZrmI AGTACT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.