Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000510

Physical Location & Seq

Genomic Coordinates Reverse (-)

8059463 .. 8060126

Gene Structure 664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAATATGGCAGTGAGGTGACATTCAGCAAACGCTTTGTGACCTCTCTCAGTGATTGTGATGAAATTTGTTTTCCAAGTTGCAAAGAACTCGCAGGGCCATATTCTAACTATATTGAAATCCGGATGAACAAGCCAGTTATACTTGCAGGGCAAGTGACGCCAGATCCCCCGGGTACGCAGTTGGAAGAGAAATGGGCAAGATGGCTTGGAGGGTTCAAACCCAGAACCGTAATATTCTGTGCTCTTGGATCTGAATACATTCTCACAAAGCAACAACTGCAGCAACTATTATTGGGTTTTGAGCTCACTGAAGGCTTTGAAGAGCGTGTAAAAGGAAAATGGGTGGTTTGTGGGAGTTGGGTTCAGCAGCCTTTGATACTCAAGCACCCATCTGTGGGTTGCTTCTGGACTCATTGCGGTTCGGGGTCTTTAAACGAGGCGCTGCTGAATGAATGCCAATTGGTGTTTCTGCCAAACATAATAGATCAGATCATCAATGCGAGAATGATGAGTGGTGATCTGAAAGTGGGAGTTGAGGTTGAGAAAGGAGATGAAGATGGCTTGTTCACCAAGGAAGGTGTTTGCAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00942 map00942

Pfam Domains

Protein Families

UDPGT

Protein Analysis

199

Amino Acids

22.16

Weight (kDa)

5.06

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	120 - 172	1.4e-07	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000510)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica	MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica	Prupe.4G054800_v2.0.a1
pyrus_communis	pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis	RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata	RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora	Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa	Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha	Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana	Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	123
AciI	CCGC	1 cut(s)	420
AclWI	GGATC	2 cut(s)	161, 259
AcsI	RAATTY	1 cut(s)	66
AcuI	CTGAAG	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	161
AfaI	GTAC	1 cut(s)	178
AfiI	CCNNNNNNNGG	2 cut(s)	397, 398
AgsI	TTSAA	3 cut(s)	119, 220, 323
AjuI	GAANNNNNNNTTGG	2 cut(s)	453, 485
AluBI	AGCT	2 cut(s)	307, 592
AluI	AGCT	2 cut(s)	307, 592
Alw21I	GWGCWC	2 cut(s)	247, 309
AlwI	GGATC	2 cut(s)	161, 259
Ama87I	CYCGRG	1 cut(s)	172
Aor13HI	TCCGGA	1 cut(s)	123
AoxI	GGCC	1 cut(s)	98
ApeKI	GCWGC	3 cut(s)	283, 370, 445
ApoI	RAATTY	1 cut(s)	66
Asp700I	GAANNNNTTC	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	445
AspS9I	GGNCC	1 cut(s)	98
AsuC2I	CCSGG	2 cut(s)	173, 174
AsuHPI	GGTGA	3 cut(s)	31, 530, 562
AvaI	CYCGRG	1 cut(s)	172
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	2 cut(s)	247, 309
BbvI	GCAGC	3 cut(s)	295, 382, 432
BccI	CCATC	3 cut(s)	198, 400, 554
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BcnI	CCSGG	2 cut(s)	173, 174
BfmI	CTRYAG	1 cut(s)	281
BfoI	RGCGCY	1 cut(s)	446
BisI	GCNGC	3 cut(s)	284, 371, 446
BlsI	GCNGC	3 cut(s)	285, 372, 447
Bme1390I	CCNGG	2 cut(s)	173, 174
BmeT110I	CYCGRG	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	98
BmrFI	CCNGG	2 cut(s)	173, 174
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	2 cut(s)	173, 174
BsaHI	GRCGYC	1 cut(s)	161
BsaJI	CCNNGG	3 cut(s)	171, 172, 573
BsaWI	WCCGGW	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	2 cut(s)	397, 398
Bse1I	ACTGG	1 cut(s)	137
Bse3DI	GCAATG	1 cut(s)	415
BseAI	TCCGGA	1 cut(s)	123
BseDI	CCNNGG	3 cut(s)	171, 172, 573
BseGI	GGATG	1 cut(s)	132
BseLI	CCNNNNNNNGG	2 cut(s)	397, 398
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	1 cut(s)	64
BseNI	ACTGG	1 cut(s)	137
BseXI	GCAGC	3 cut(s)	295, 382, 432
BshFI	GGCC	1 cut(s)	100
BsiHKAI	GWGCWC	2 cut(s)	247, 309
BsiHKCI	CYCGRG	1 cut(s)	172
BsiSI	CCGG	2 cut(s)	124, 173
BslI	CCNNNNNNNGG	2 cut(s)	397, 398
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	1 cut(s)	100
BsoBI	CYCGRG	1 cut(s)	172
Bsp1286I	GDGCHC	2 cut(s)	247, 309
Bsp13I	TCCGGA	1 cut(s)	123
Bsp143I	GATC	5 cut(s)	166, 251, 487, 492, 520
BspACI	CCGC	1 cut(s)	420
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	1 cut(s)	63
BspEI	TCCGGA	1 cut(s)	123
BspMAI	CTGCAG	1 cut(s)	285
BspPI	GGATC	2 cut(s)	161, 259
BspQI	GCTCTTC	1 cut(s)	318
BsrDI	GCAATG	1 cut(s)	415
BsrI	ACTGG	1 cut(s)	137
BssECI	CCNNGG	3 cut(s)	171, 172, 573
BssMI	GATC	5 cut(s)	166, 251, 487, 492, 520
BssNI	GRCGYC	1 cut(s)	161
BssT1I	CCWWGG	1 cut(s)	573
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	2 cut(s)	183, 318
BstACI	GRCGYC	1 cut(s)	161
BstAPI	GCANNNNNTGC	1 cut(s)	280
BstC8I	GCNNGC	1 cut(s)	590
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	446
BstHHI	GCGC	1 cut(s)	445
BstKTI	GATC	5 cut(s)	169, 254, 490, 495, 523
BstMBI	GATC	5 cut(s)	166, 251, 487, 492, 520
BstMWI	GCNNNNNNNGC	2 cut(s)	160, 280
BstSCI	CCNGG	2 cut(s)	171, 172
BstSFI	CTRYAG	1 cut(s)	281
BstV1I	GCAGC	3 cut(s)	295, 382, 432
BstX2I	RGATCY	2 cut(s)	166, 251
BstYI	RGATCY	2 cut(s)	166, 251
BsuRI	GGCC	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	132
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	3 cut(s)	19, 58, 309
Cac8I	GCNNGC	1 cut(s)	590
CfoI	GCGC	1 cut(s)	445
Cfr13I	GGNCC	1 cut(s)	98
Cfr9I	CCCGGG	1 cut(s)	172
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	177
CviJI	RGCY	8 cut(s)	100, 136, 208, 307, 318, 373, 564, 592
CviKI_1	RGCY	8 cut(s)	100, 136, 208, 307, 318, 373, 564, 592
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	5 cut(s)	168, 253, 489, 494, 522
DpnII	GATC	5 cut(s)	166, 251, 487, 492, 520
DraI	TTTAAA	1 cut(s)	435
Eam1104I	CTCTTC	2 cut(s)	183, 318
EarI	CTCTTC	2 cut(s)	183, 318
Ecl136II	GAGCTC	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	573
Eco24I	GRGCYC	1 cut(s)	309
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	172
EcoICRI	GAGCTC	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	573
FaiI	YATR	5 cut(s)	9, 103, 114, 143, 482
Fnu4HI	GCNGC	3 cut(s)	284, 371, 446
FokI	GGATG	1 cut(s)	139
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	3 cut(s)	284, 371, 446
GlaI	GCGC	1 cut(s)	444
GluI	GCNGC	3 cut(s)	284, 371, 446
HaeII	RGCGCY	1 cut(s)	446
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	2 cut(s)	124, 173
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	1 cut(s)	445
Hin1I	GRCGYC	1 cut(s)	161
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HinfI	GANTC	1 cut(s)	412
HpaII	CCGG	2 cut(s)	124, 173
HphI	GGTGA	3 cut(s)	31, 530, 562
Hpy166II	GTNNAC	1 cut(s)	570
Hpy188I	TCNGA	3 cut(s)	256, 492, 525
Hpy188III	TCNNGA	2 cut(s)	124, 409
Hpy8I	GTNNAC	1 cut(s)	570
HpyAV	CCTTC	2 cut(s)	308, 572
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	4 cut(s)	84, 149, 283, 588
HpyF10VI	GCNNNNNNNGC	2 cut(s)	160, 280
HpyF3I	CTNAG	1 cut(s)	50
Hsp92I	GRCGYC	1 cut(s)	161
HspAI	GCGC	1 cut(s)	443
Kpn2I	TCCGGA	1 cut(s)	123
Kzo9I	GATC	5 cut(s)	166, 251, 487, 492, 520
LguI	GCTCTTC	1 cut(s)	318
LpnPI	CCDG	8 cut(s)	81, 135, 137, 150, 177, 186, 238, 394
Lsp1109I	GCAGC	3 cut(s)	295, 382, 432
MaeIII	GTNAC	3 cut(s)	19, 40, 157
MalI	GATC	5 cut(s)	168, 253, 489, 494, 522
MboI	GATC	5 cut(s)	166, 251, 487, 492, 520
MboII	GAAGA	3 cut(s)	200, 335, 569
MfeI	CAATTG	1 cut(s)	461
MflI	RGATCY	2 cut(s)	166, 251
MhlI	GDGCHC	2 cut(s)	247, 309
MluCI	AATT	2 cut(s)	66, 461
MlyI	GAGTC	1 cut(s)	406
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	5 cut(s)	10, 55, 206, 433, 532
MroI	TCCGGA	1 cut(s)	123
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	1 cut(s)	434
MspI	CCGG	2 cut(s)	124, 173
MspR9I	CCNGG	2 cut(s)	173, 174
MunI	CAATTG	1 cut(s)	461
Mva1269I	GAATGC	1 cut(s)	461
MwoI	GCNNNNNNNGC	2 cut(s)	160, 280
NciI	CCSGG	2 cut(s)	173, 174
NdeII	GATC	5 cut(s)	166, 251, 487, 492, 520
NmuCI	GTSAC	3 cut(s)	19, 40, 157
PciSI	GCTCTTC	1 cut(s)	318
PctI	GAATGC	1 cut(s)	461
PdmI	GAANNNNTTC	1 cut(s)	261
PkrI	GCNGC	3 cut(s)	285, 372, 447
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Psp124BI	GAGCTC	1 cut(s)	309
PspPI	GGNCC	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	285
PsuI	RGATCY	2 cut(s)	166, 251
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
SacI	GAGCTC	1 cut(s)	309
SapI	GCTCTTC	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	3 cut(s)	284, 371, 446
Sau3AI	GATC	5 cut(s)	166, 251, 487, 492, 520
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	2 cut(s)	173, 174
SduI	GDGCHC	2 cut(s)	247, 309
SetI	ASST	6 cut(s)	21, 47, 309, 543, 583, 594
SfcI	CTRYAG	1 cut(s)	281
SmaI	CCCGGG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	2 cut(s)	66, 461
SsiI	CCGC	1 cut(s)	420
SspI	AATATT	1 cut(s)	237
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	2 cut(s)	171, 172
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	1 cut(s)	232
TasI	AATT	2 cut(s)	66, 461
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	3 cut(s)	19, 58, 316
TseFI	GTSAC	3 cut(s)	19, 40, 157
TseI	GCWGC	3 cut(s)	283, 370, 445
Tsp45I	GTSAC	3 cut(s)	19, 40, 157
TspDTI	ATGAA	4 cut(s)	78, 143, 468, 570
TspMI	CCCGGG	1 cut(s)	172
TspRI	CASTG	3 cut(s)	19, 58, 316
XapI	RAATTY	1 cut(s)	66
XmaI	CCCGGG	1 cut(s)	172
XmnI	GAANNNNTTC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.