Rroxscaffold_1G00067280

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000510
Physical Location & Seq
Reverse (-)
88646873 .. 88647967
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00067280.1

Sequence Viewer

Length: 1095 bp
ATGAGTGACGATCAAACCTTGCATATTGCTATGTATCCATGGTTTGCTATGGGTCATTTGACTGCATTCCTCCACATCTCCAACAAACTCGCAGAAAGGGGCCACAAGATCTCCTTCTTTTTACCTCTCAAAACTCAATCCAGGTTGCAGCACTATAATCTCCACCCTCATCTCATTACCTTCATTCCCCTCAATGTCCCTCACGTCGATGGCCTCCTCCGGGGACTGAAACGACAGCTGACATTCCTCTCTCTTTGGGCTCTCTTCTTGCTACCGCCATGGAGCTCACTCGACCCCAAATCGAACAATCTCTCCCTCAAACTCAAACCTGATTTTGTGTTCTTCGATTTTAGTTACTGGTTGCCTGCATTGTTGCGTCAACTAGGCAATAACATTAAGTCAGTAGGTTACTGGGTAATTAATCCTGTAAGTGTGTGGTACCTGCTAAGCCTAGGCCTGCCGAGAAAGATACCATTGGATGATGCTGATGCTGTACCGCCTTTGCTGTGTTTCAGTAGTTCATTCTCAATCAAGTTACGAACTCATGAAGCTCGAGCTTATGATGCCATGGCAAACAAGGAATTTGGCAGCGGATTGAGATTTGGCAAACGCATATTGACCTCTTTCAGCGATTGTGATGCAATTTGTTTCAAAACTTGCAGGGAATTCGCAGGGCCATTTTGTAACTATTTTGAAATCCAAATGAACAAGCCGGTCATTCTTGCAGGCCCAGTGGTGCCAGATCCCCCAACTTCACAGTTGGAAGAGAAATGGGCAAAATGGCTTGGAGGGTTCGAACCAAGAACCGTGATTTTCTGTGCTCTTGGATCTGAATACATTCTCACAAAGCAGCAACTGCAACAACTATTATTGGGTTTTGAGCTTACTGGTTTGCCATTCTTCGCTGCCCTTAAACCGCCAACCGGAGTTGAATCAATTGAATCGGCACTGCCAGAAGGCTTTGAAATGCGTCTAAAAGGAAAAGGGGTGGTTCATGGGGGTTGGGTTCAGCAGCCTTTGATACTGAAGCACCCATCTGTGGGTTGCTTTGTGACTCACTGCGGTTCGGGGTCTTTAAAAATGAGGCGTTGGTGA

Protein Analysis

364

Amino Acids

41.14

Weight (kDa)

9.2

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 450
Acc65I GGTACC 1 cut(s) 438
AccB1I GGYRCC 2 cut(s) 438, 736
AciI CCGC 5 cut(s) 275, 497, 591, 917, 1062
AclWI GGATC 2 cut(s) 737, 835
AcsI RAATTY 2 cut(s) 581, 665
AcuI CTGAAG 1 cut(s) 1046
AfaI GTAC 2 cut(s) 440, 495
AfiI CCNNNNNNNGG 4 cut(s) 220, 923, 1039, 1040
AgsI TTSAA 5 cut(s) 652, 695, 932, 941, 965
AjiI CACGTC 1 cut(s) 205
AjnI CCWGG 1 cut(s) 140
AloI GAACNNNNNNTCC 2 cut(s) 296, 328
AluBI AGCT 5 cut(s) 238, 285, 551, 557, 883
AluI AGCT 5 cut(s) 238, 285, 551, 557, 883
Alw21I GWGCWC 2 cut(s) 287, 823
AlwI GGATC 2 cut(s) 737, 835
AlwNI CAGNNNCTG 1 cut(s) 856
Ama87I CYCGRG 1 cut(s) 552
AoxI GGCC 5 cut(s) 100, 211, 454, 674, 727
ApeKI GCWGC 5 cut(s) 148, 588, 850, 905, 1012
ApoI RAATTY 2 cut(s) 581, 665
AseI ATTAAT 1 cut(s) 420
Asp700I GAANNNNTTC 1 cut(s) 837
Asp718I GGTACC 1 cut(s) 438
AspA2I CCTAGG 1 cut(s) 451
AspS9I GGNCC 3 cut(s) 100, 674, 728
AsuC2I CCSGG 1 cut(s) 221
AsuII TTCGAA 1 cut(s) 795
AvaI CYCGRG 1 cut(s) 552
AvrII CCTAGG 1 cut(s) 451
BanI GGYRCC 2 cut(s) 438, 736
BanII GRGCYC 2 cut(s) 262, 287
Bbv12I GWGCWC 2 cut(s) 287, 823
BbvI GCAGC 5 cut(s) 160, 600, 862, 892, 1024
BccI CCATC 2 cut(s) 203, 1042
BcgI CGANNNNNNTGC 4 cut(s) 620, 649, 654, 683
BciT130I CCWGG 1 cut(s) 142
BciVI GTATCC 1 cut(s) 45
BcnI CCSGG 1 cut(s) 221
BfaI CTAG 2 cut(s) 383, 452
BfuAI ACCTGC 1 cut(s) 450
BfuI GTATCC 1 cut(s) 45
BglII AGATCT 1 cut(s) 108
BisI GCNGC 5 cut(s) 149, 589, 851, 906, 1013
BlnI CCTAGG 1 cut(s) 451
BlpI GCTNAGC 1 cut(s) 446
BlsI GCNGC 5 cut(s) 150, 590, 852, 907, 1014
Bme1390I CCNGG 2 cut(s) 142, 221
BmeT110I CYCGRG 1 cut(s) 552
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 3 cut(s) 100, 674, 728
BmiI GGNNCC 3 cut(s) 101, 440, 738
BmrFI CCNGG 2 cut(s) 142, 221
BmrI ACTGGG 2 cut(s) 421, 725
BmsI GCATC 4 cut(s) 472, 478, 553, 628
BmuI ACTGGG 2 cut(s) 421, 725
Bpu1102I GCTNAGC 1 cut(s) 446
Bpu14I TTCGAA 1 cut(s) 795
BpuMI CCSGG 1 cut(s) 221
BsaJI CCNNGG 5 cut(s) 38, 220, 278, 451, 567
BsaWI WCCGGW 1 cut(s) 923
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 296, 326
Bsc4I CCNNNNNNNGG 4 cut(s) 220, 923, 1039, 1040
Bse118I RCCGGY 1 cut(s) 712
Bse1I ACTGG 4 cut(s) 362, 416, 731, 892
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 5 cut(s) 38, 220, 278, 451, 567
BseGI GGATG 1 cut(s) 484
BseLI CCNNNNNNNGG 4 cut(s) 220, 923, 1039, 1040
BseNI ACTGG 4 cut(s) 362, 416, 731, 892
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 5 cut(s) 160, 600, 862, 892, 1024
BshFI GGCC 5 cut(s) 102, 213, 456, 676, 729
BshNI GGYRCC 2 cut(s) 438, 736
BsiHKAI GWGCWC 2 cut(s) 287, 823
BsiHKCI CYCGRG 1 cut(s) 552
BsiSI CCGG 3 cut(s) 220, 713, 924
BslFI GGGAC 2 cut(s) 182, 237
BslI CCNNNNNNNGG 4 cut(s) 220, 923, 1039, 1040
BsmFI GGGAC 2 cut(s) 182, 237
BsmI GAATGC 1 cut(s) 65
BsnI GGCC 5 cut(s) 102, 213, 456, 676, 729
BsoBI CYCGRG 1 cut(s) 552
Bsp119I TTCGAA 1 cut(s) 795
Bsp1286I GDGCHC 3 cut(s) 262, 287, 823
Bsp143I GATC 4 cut(s) 10, 108, 742, 827
Bsp1720I GCTNAGC 1 cut(s) 446
Bsp19I CCATGG 3 cut(s) 38, 278, 567
BspACI CCGC 5 cut(s) 275, 497, 591, 917, 1062
BspANI GGCC 5 cut(s) 102, 213, 456, 676, 729
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 3 cut(s) 101, 440, 738
BspMI ACCTGC 1 cut(s) 450
BspPI GGATC 2 cut(s) 737, 835
BspT104I TTCGAA 1 cut(s) 795
BspT107I GGYRCC 2 cut(s) 438, 736
BsrFI RCCGGY 1 cut(s) 712
BsrI ACTGG 4 cut(s) 362, 416, 731, 892
BssAI RCCGGY 1 cut(s) 712
BssECI CCNNGG 5 cut(s) 38, 220, 278, 451, 567
BssMI GATC 4 cut(s) 10, 108, 742, 827
BssT1I CCWWGG 4 cut(s) 38, 278, 451, 567
Bst2UI CCWGG 1 cut(s) 142
Bst4CI ACNGT 2 cut(s) 759, 808
Bst6I CTCTTC 2 cut(s) 269, 759
BstAPI GCANNNNNTGC 1 cut(s) 856
BstBI TTCGAA 1 cut(s) 795
BstC8I GCNNGC 3 cut(s) 366, 458, 727
BstDEI CTNAG 1 cut(s) 446
BstDSI CCRYGG 3 cut(s) 38, 278, 567
BstF5I GGATG 1 cut(s) 484
BstKTI GATC 4 cut(s) 13, 111, 745, 830
BstMBI GATC 4 cut(s) 10, 108, 742, 827
BstMWI GCNNNNNNNGC 2 cut(s) 563, 856
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 2 cut(s) 140, 219
BstV1I GCAGC 5 cut(s) 160, 600, 862, 892, 1024
BstX2I RGATCY 3 cut(s) 108, 742, 827
BstYI RGATCY 3 cut(s) 108, 742, 827
BsuI GTATCC 1 cut(s) 45
BsuRI GGCC 5 cut(s) 102, 213, 456, 676, 729
BtgI CCRYGG 3 cut(s) 38, 278, 567
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 1 cut(s) 484
BtsI GCAGTG 2 cut(s) 947, 1057
BtsIMutI CAGTG 3 cut(s) 738, 947, 1057
BveI ACCTGC 1 cut(s) 450
Cac8I GCNNGC 3 cut(s) 366, 458, 727
CaiI CAGNNNCTG 1 cut(s) 856
CciI TCATGA 1 cut(s) 544
Cfr10I RCCGGY 1 cut(s) 712
Cfr13I GGNCC 3 cut(s) 100, 674, 728
CseI GACGC 2 cut(s) 365, 959
Csp6I GTAC 2 cut(s) 439, 494
CviAII CATG 5 cut(s) 39, 279, 545, 568, 995
CviQI GTAC 2 cut(s) 439, 494
DdeI CTNAG 1 cut(s) 446
DpnI GATC 4 cut(s) 12, 110, 744, 829
DpnII GATC 4 cut(s) 10, 108, 742, 827
DraI TTTAAA 1 cut(s) 1077
Eam1104I CTCTTC 2 cut(s) 269, 759
EarI CTCTTC 2 cut(s) 269, 759
Ecl136II GAGCTC 1 cut(s) 285
Eco130I CCWWGG 4 cut(s) 38, 278, 451, 567
Eco147I AGGCCT 1 cut(s) 456
Eco24I GRGCYC 2 cut(s) 262, 287
Eco53kI GAGCTC 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 1046
Eco88I CYCGRG 1 cut(s) 552
EcoICRI GAGCTC 1 cut(s) 285
EcoRI GAATTC 1 cut(s) 665
EcoRII CCWGG 1 cut(s) 140
EcoT14I CCWWGG 4 cut(s) 38, 278, 451, 567
EcoT38I GRGCYC 2 cut(s) 262, 287
ErhI CCWWGG 4 cut(s) 38, 278, 451, 567
FaeI CATG 5 cut(s) 42, 282, 548, 571, 998
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FaqI GGGAC 2 cut(s) 182, 237
FatI CATG 5 cut(s) 38, 278, 544, 567, 994
Fnu4HI GCNGC 5 cut(s) 149, 589, 851, 906, 1013
FokI GGATG 1 cut(s) 491
FriOI GRGCYC 2 cut(s) 262, 287
Fsp4HI GCNGC 5 cut(s) 149, 589, 851, 906, 1013
FspBI CTAG 2 cut(s) 383, 452
GluI GCNGC 5 cut(s) 149, 589, 851, 906, 1013
HaeIII GGCC 5 cut(s) 102, 213, 456, 676, 729
HapII CCGG 3 cut(s) 220, 713, 924
HgaI GACGC 2 cut(s) 365, 959
Hin1II CATG 5 cut(s) 42, 282, 548, 571, 998
HincII GTYRAC 1 cut(s) 380
HindII GTYRAC 1 cut(s) 380
HinfI GANTC 3 cut(s) 932, 941, 1054
HpaII CCGG 3 cut(s) 220, 713, 924
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 1 cut(s) 832
Hpy188III TCNNGA 1 cut(s) 545
Hpy8I GTNNAC 1 cut(s) 380
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 3 cut(s) 124, 190, 950
HpyCH4III ACNGT 2 cut(s) 759, 808
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 8 cut(s) 22, 65, 148, 368, 641, 660, 725, 859
HpyF10VI GCNNNNNNNGC 2 cut(s) 563, 856
HpyF3I CTNAG 1 cut(s) 446
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 5 cut(s) 42, 282, 548, 571, 998
KpnI GGTACC 1 cut(s) 442
Kzo9I GATC 4 cut(s) 10, 108, 742, 827
LmnI GCTCC 1 cut(s) 282
Lsp1109I GCAGC 5 cut(s) 160, 600, 862, 892, 1024
LweI GCATC 4 cut(s) 472, 478, 553, 628
MaeI CTAG 2 cut(s) 383, 452
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 6 cut(s) 5, 353, 407, 534, 683, 1051
MalI GATC 4 cut(s) 12, 110, 744, 829
MboI GATC 4 cut(s) 10, 108, 742, 827
MboII GAAGA 4 cut(s) 256, 334, 776, 892
MfeI CAATTG 1 cut(s) 936
MflI RGATCY 3 cut(s) 108, 742, 827
MhlI GDGCHC 3 cut(s) 262, 287, 823
MluCI AATT 5 cut(s) 417, 581, 642, 665, 936
MlyI GAGTC 1 cut(s) 1048
MmeI TCCRAC 2 cut(s) 105, 741
MroXI GAANNNNTTC 1 cut(s) 837
MseI TTAA 4 cut(s) 396, 420, 912, 1076
MslI CAYNNNNRTG 1 cut(s) 207
MspA1I CMGCKG 2 cut(s) 238, 591
MspI CCGG 3 cut(s) 220, 713, 924
MspR9I CCNGG 2 cut(s) 142, 221
MunI CAATTG 1 cut(s) 936
Mva1269I GAATGC 1 cut(s) 65
MvaI CCWGG 1 cut(s) 142
MwoI GCNNNNNNNGC 2 cut(s) 563, 856
NciI CCSGG 1 cut(s) 221
NcoI CCATGG 3 cut(s) 38, 278, 567
NdeII GATC 4 cut(s) 10, 108, 742, 827
NlaIII CATG 5 cut(s) 42, 282, 548, 571, 998
NlaIV GGNNCC 3 cut(s) 101, 440, 738
NmeAIII GCCGAG 1 cut(s) 486
NmuCI GTSAC 2 cut(s) 5, 1051
NspV TTCGAA 1 cut(s) 795
PaeR7I CTCGAG 1 cut(s) 552
PagI TCATGA 1 cut(s) 544
PceI AGGCCT 1 cut(s) 456
PctI GAATGC 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 837
PfeI GAWTC 2 cut(s) 932, 941
PkrI GCNGC 5 cut(s) 150, 590, 852, 907, 1014
PleI GAGTC 1 cut(s) 1048
PpsI GAGTC 1 cut(s) 1048
PshBI ATTAAT 1 cut(s) 420
Psp124BI GAGCTC 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 3 cut(s) 101, 440, 738
PspPI GGNCC 3 cut(s) 100, 674, 728
PspXI VCTCGAGB 1 cut(s) 552
PstNI CAGNNNCTG 1 cut(s) 856
PsuI RGATCY 3 cut(s) 108, 742, 827
PvuII CAGCTG 1 cut(s) 238
RsaI GTAC 2 cut(s) 440, 495
RsaNI GTAC 2 cut(s) 439, 494
RseI CAYNNNNRTG 1 cut(s) 207
SacI GAGCTC 1 cut(s) 287
SaqAI TTAA 4 cut(s) 396, 420, 912, 1076
SatI GCNGC 5 cut(s) 149, 589, 851, 906, 1013
Sau3AI GATC 4 cut(s) 10, 108, 742, 827
Sau96I GGNCC 3 cut(s) 100, 674, 728
SchI GAGTC 1 cut(s) 1048
ScrFI CCNGG 2 cut(s) 142, 221
SduI GDGCHC 3 cut(s) 262, 287, 823
SfaNI GCATC 4 cut(s) 472, 478, 553, 628
Sfr274I CTCGAG 1 cut(s) 552
SfuI TTCGAA 1 cut(s) 795
SlaI CTCGAG 1 cut(s) 552
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 552
SmoI CTYRAG 1 cut(s) 552
Sse9I AATT 5 cut(s) 417, 581, 642, 665, 936
SseBI AGGCCT 1 cut(s) 456
SsiI CCGC 5 cut(s) 275, 497, 591, 917, 1062
SspMI CTAG 2 cut(s) 383, 452
SstI GAGCTC 1 cut(s) 287
StuI AGGCCT 1 cut(s) 456
StyD4I CCNGG 2 cut(s) 140, 219
StyI CCWWGG 4 cut(s) 38, 278, 451, 567
TaaI ACNGT 2 cut(s) 759, 808
TaiI ACGT 1 cut(s) 207
TaqI TCGA 6 cut(s) 207, 291, 302, 345, 553, 795
TasI AATT 5 cut(s) 417, 581, 642, 665, 936
TfiI GAWTC 2 cut(s) 932, 941
Tru1I TTAA 4 cut(s) 396, 420, 912, 1076
Tru9I TTAA 4 cut(s) 396, 420, 912, 1076
TscAI CASTG 3 cut(s) 738, 954, 1064
TseFI GTSAC 2 cut(s) 5, 1051
TseI GCWGC 5 cut(s) 148, 588, 850, 905, 1012
Tsp45I GTSAC 2 cut(s) 5, 1051
TspDTI ATGAA 5 cut(s) 172, 510, 561, 719, 983
TspRI CASTG 3 cut(s) 738, 954, 1064
VspI ATTAAT 1 cut(s) 420
XapI RAATTY 2 cut(s) 581, 665
XhoI CTCGAG 1 cut(s) 552
XmaJI CCTAGG 1 cut(s) 451
XmnI GAANNNNTTC 1 cut(s) 837
XspI CTAG 2 cut(s) 383, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.