Rmu_sc0002711.1_g000007

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002711.1
Physical Location & Seq
Forward (+)
39798 .. 42900
3103 bp
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UTR
Exon/CDS
Intron
Rmu_sc0002711.1_g000007.1.cds

Sequence Viewer

Length: 288 bp
atggaagattcgtcttcagctgaccaagcctgttacttagcctccattggtatggggagtttgcggagctgctgcctctgggttgaaattgaaaaaggagatgaagatggcttgttcatcaaggaaggtgtttgcagagctgtgaaggcagtgatggatgaagacagtgaggtgggaaaggaggtgaggacaaaccatgctaagtggagggagttcttctcccataaagggcttgagagctcatacattgatgcttttgtgcaggagctgcatgaactgctagggtga

Protein Analysis

95

Amino Acids

10.62

Weight (kDa)

4.65

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 228
AgsI TTSAA 2 cut(s) 86, 92
AluBI AGCT 5 cut(s) 20, 69, 140, 240, 268
AluI AGCT 5 cut(s) 20, 69, 140, 240, 268
Alw21I GWGCWC 1 cut(s) 242
AlwNI CAGNNNCTG 1 cut(s) 268
ApeKI GCWGC 3 cut(s) 69, 72, 268
AsuHPI GGTGA 1 cut(s) 196
BanII GRGCYC 1 cut(s) 242
BbsI GAAGAC 2 cut(s) 6, 168
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 3 cut(s) 56, 59, 255
BccI CCATC 2 cut(s) 101, 148
BfaI CTAG 1 cut(s) 281
BisI GCNGC 3 cut(s) 70, 73, 269
BlsI GCNGC 3 cut(s) 71, 74, 270
BmsI GCATC 1 cut(s) 241
BpiI GAAGAC 2 cut(s) 6, 168
BplI GAGNNNNNCTC 2 cut(s) 203, 235
BpuEI CTTGAG 1 cut(s) 254
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 228
BseXI GCAGC 3 cut(s) 56, 59, 255
BsgI GTGCAG 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 242
BspACI CCGC 1 cut(s) 64
Bst4CI ACNGT 1 cut(s) 167
BstAPI GCANNNNNTGC 2 cut(s) 268, 277
BstDEI CTNAG 2 cut(s) 37, 201
BstF5I GGATG 1 cut(s) 163
BstMWI GCNNNNNNNGC 4 cut(s) 26, 146, 268, 277
BstV1I GCAGC 3 cut(s) 56, 59, 255
BstV2I GAAGAC 2 cut(s) 6, 168
BstXI CCANNNNNNTGG 1 cut(s) 52
BtsCI GGATG 1 cut(s) 163
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 2 cut(s) 156, 172
CaiI CAGNNNCTG 1 cut(s) 268
CviAII CATG 2 cut(s) 197, 272
CviJI RGCY 9 cut(s) 20, 29, 41, 69, 111, 140, 232, 240, 268
CviKI_1 RGCY 9 cut(s) 20, 29, 41, 69, 111, 140, 232, 240, 268
DdeI CTNAG 2 cut(s) 37, 201
Ecl136II GAGCTC 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 242
Eco53kI GAGCTC 1 cut(s) 240
EcoICRI GAGCTC 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 242
FaeI CATG 2 cut(s) 200, 275
FaiI YATR 5 cut(s) 53, 198, 225, 244, 273
FatI CATG 2 cut(s) 196, 271
Fnu4HI GCNGC 3 cut(s) 70, 73, 269
FokI GGATG 1 cut(s) 170
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 3 cut(s) 70, 73, 269
FspBI CTAG 1 cut(s) 281
GluI GCNGC 3 cut(s) 70, 73, 269
Hin1II CATG 2 cut(s) 200, 275
HinfI GANTC 1 cut(s) 8
HphI GGTGA 1 cut(s) 196
HpyAV CCTTC 2 cut(s) 119, 139
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 3 cut(s) 135, 262, 271
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 146, 268, 277
HpyF3I CTNAG 2 cut(s) 37, 201
Hsp92II CATG 2 cut(s) 200, 275
LmnI GCTCC 2 cut(s) 66, 265
LpnPI CCDG 3 cut(s) 43, 64, 248
Lsp1109I GCAGC 3 cut(s) 56, 59, 255
LweI GCATC 1 cut(s) 241
MaeI CTAG 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 32
MboII GAAGA 5 cut(s) 6, 17, 116, 173, 208
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 1 cut(s) 87
MnlI CCTC 6 cut(s) 52, 86, 163, 175, 180, 201
MslI CAYNNNNRTG 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 20
MwoI GCNNNNNNNGC 4 cut(s) 26, 146, 268, 277
NlaIII CATG 2 cut(s) 200, 275
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 3 cut(s) 71, 74, 270
Psp124BI GAGCTC 1 cut(s) 242
PstNI CAGNNNCTG 1 cut(s) 268
PvuII CAGCTG 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 50
SacI GAGCTC 1 cut(s) 242
SatI GCNGC 3 cut(s) 70, 73, 269
SduI GDGCHC 1 cut(s) 242
SetI ASST 8 cut(s) 22, 71, 130, 142, 174, 186, 242, 270
SfaNI GCATC 1 cut(s) 241
SgeI CNNG 9 cut(s) 38, 42, 91, 124, 133, 209, 245, 275, 284
SmiMI CAYNNNNRTG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 1 cut(s) 87
SsiI CCGC 1 cut(s) 64
SspMI CTAG 1 cut(s) 281
SstI GAGCTC 1 cut(s) 242
TaaI ACNGT 1 cut(s) 167
TasI AATT 1 cut(s) 87
TfiI GAWTC 1 cut(s) 8
TscAI CASTG 2 cut(s) 156, 172
TseI GCWGC 3 cut(s) 69, 72, 268
TspDTI ATGAA 4 cut(s) 106, 117, 174, 288
TspRI CASTG 2 cut(s) 156, 172
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.