Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8094034.1

Orthogroup ID

OG0000510

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 541

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8094034.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ctgaagaaggaacagttgcaagaactggtgttcggatttgagctcacgggtctcccgttcttcgcagcgttgaaaacgcctgagggattcgagtccatcgaagctgcattgcccgaagggttcgaagagagggtgaaagggagaggtgttgtttatagtggctgggtgcaacaaccgttgatactgaatcacccatctgtagggtgctttgtgactcactgtggttcggggtctctagctgaggcgatgatgaaccattgccggttggtgcttctgccgcacgtcggagaccagatcattaatgcgagaatgatgggaggcgatctgagagtgggagttgaagtcgagaagggagacgaagatggcttgtttagcaaggaaggtgtttgcaaagctgtggaggttgtgatggatgatgagagtgaggtagggaaagaagtgaaggctaaccatactaagtggagggagttcttctccaacaaagggcttgagaaaacgtacattgatggttttgagcagaggctgcatcaactgatagaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00942 map00942

Pfam Domains

Protein Families

UDPGT

Protein Analysis

180

Amino Acids

20.04

Weight (kDa)

5.12

Isoelectric Point (pI)

31.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000510)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica	MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica	Prupe.4G054800_v2.0.a1
pyrus_communis	pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis	RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata	RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora	Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa	Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha	Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana	Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	23
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	3 cut(s)	200, 284, 483
AgsI	TTSAA	2 cut(s)	73, 341
AjiI	CACGTC	1 cut(s)	283
AluBI	AGCT	4 cut(s)	43, 104, 239, 395
AluI	AGCT	4 cut(s)	43, 104, 239, 395
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	4 cut(s)	56, 237, 282, 348
AlwNI	CAGNNNCTG	1 cut(s)	523
ApeKI	GCWGC	3 cut(s)	65, 104, 523
AseI	ATTAAT	1 cut(s)	300
AsuHPI	GGTGA	2 cut(s)	145, 182
AsuII	TTCGAA	1 cut(s)	123
AxyI	CCTNAGG	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	45
BbvCI	CCTCAGC	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	77, 91, 510
BccI	CCATC	6 cut(s)	104, 202, 307, 356, 403, 500
BcoDI	GTCTC	4 cut(s)	56, 237, 282, 348
BfaI	CTAG	1 cut(s)	236
BfmI	CTRYAG	1 cut(s)	198
BisI	GCNGC	4 cut(s)	66, 105, 278, 524
BlsI	GCNGC	4 cut(s)	67, 106, 279, 525
BmgBI	CACGTC	1 cut(s)	283
BmsI	GCATC	1 cut(s)	535
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
Bpu10I	CCTNAGC	1 cut(s)	240
Bpu14I	TTCGAA	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	509
BsaI	GGTCTC	3 cut(s)	56, 237, 282
BsaXI	ACNNNNNCTCC	2 cut(s)	327, 357
Bsc4I	CCNNNNNNNGG	3 cut(s)	200, 284, 483
Bse118I	RCCGGY	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	30
Bse21I	CCTNAGG	1 cut(s)	81
Bse3DI	GCAATG	2 cut(s)	107, 256
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	3 cut(s)	200, 284, 483
BseMI	GCAATG	2 cut(s)	107, 256
BseMII	CTCAG	3 cut(s)	72, 231, 317
BseNI	ACTGG	1 cut(s)	30
BseXI	GCAGC	3 cut(s)	77, 91, 510
BseYI	CCCAGC	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	262
BslI	CCNNNNNNNGG	3 cut(s)	200, 284, 483
BsmAI	GTCTC	4 cut(s)	56, 237, 282, 348
BsmBI	CGTCTC	1 cut(s)	348
Bso31I	GGTCTC	3 cut(s)	56, 237, 282
Bsp119I	TTCGAA	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	294, 322
BspACI	CCGC	1 cut(s)	278
BspCNI	CTCAG	3 cut(s)	73, 232, 318
BspT104I	TTCGAA	1 cut(s)	123
BspTNI	GGTCTC	3 cut(s)	56, 237, 282
BsrDI	GCAATG	2 cut(s)	107, 256
BsrFI	RCCGGY	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	30
BssAI	RCCGGY	1 cut(s)	261
BssMI	GATC	2 cut(s)	294, 322
Bst4CI	ACNGT	3 cut(s)	15, 177, 221
Bst6I	CTCTTC	1 cut(s)	120
BstAPI	GCANNNNNTGC	1 cut(s)	523
BstBI	TTCGAA	1 cut(s)	123
BstDEI	CTNAG	4 cut(s)	81, 240, 326, 456
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	2 cut(s)	297, 325
BstMAI	GTCTC	4 cut(s)	56, 237, 282, 348
BstMBI	GATC	2 cut(s)	294, 322
BstMWI	GCNNNNNNNGC	3 cut(s)	277, 372, 523
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	77, 91, 510
Bsu36I	CCTNAGG	1 cut(s)	81
BtgZI	GCGATG	1 cut(s)	260
BtrI	CACGTC	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	217
CaiI	CAGNNNCTG	1 cut(s)	523
Cfr10I	RCCGGY	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	499
CviJI	RGCY	9 cut(s)	43, 104, 162, 239, 366, 395, 446, 487, 523
CviKI_1	RGCY	9 cut(s)	43, 104, 162, 239, 366, 395, 446, 487, 523
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	4 cut(s)	81, 240, 326, 456
DpnI	GATC	2 cut(s)	296, 324
DpnII	GATC	2 cut(s)	294, 322
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Ecl136II	GAGCTC	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	45
Eco31I	GGTCTC	3 cut(s)	56, 237, 282
Eco53kI	GAGCTC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	23
Eco81I	CCTNAGG	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	348
FaiI	YATR	2 cut(s)	156, 453
Fnu4HI	GCNGC	4 cut(s)	66, 105, 278, 524
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	4 cut(s)	66, 105, 278, 524
FspBI	CTAG	1 cut(s)	236
GluI	GCNGC	4 cut(s)	66, 105, 278, 524
GsaI	CCCAGC	1 cut(s)	166
HapII	CCGG	1 cut(s)	262
HinfI	GANTC	4 cut(s)	87, 92, 187, 214
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	2 cut(s)	145, 182
Hpy188I	TCNGA	3 cut(s)	35, 287, 327
Hpy188III	TCNNGA	1 cut(s)	346
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	4 cut(s)	110, 343, 374, 436
HpyCH4III	ACNGT	3 cut(s)	15, 177, 221
HpyCH4IV	ACGT	2 cut(s)	282, 497
HpyCH4V	TGCA	5 cut(s)	19, 107, 169, 390, 526
HpyF10VI	GCNNNNNNNGC	3 cut(s)	277, 372, 523
HpyF3I	CTNAG	4 cut(s)	81, 240, 326, 456
HpySE526I	ACGT	2 cut(s)	282, 497
Kzo9I	GATC	2 cut(s)	294, 322
LpnPI	CCDG	5 cut(s)	11, 93, 148, 275, 305
Lsp1109I	GCAGC	3 cut(s)	77, 91, 510
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	2 cut(s)	282, 497
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	2 cut(s)	296, 324
MboI	GATC	2 cut(s)	294, 322
MboII	GAAGA	5 cut(s)	16, 52, 137, 371, 463
MhlI	GDGCHC	1 cut(s)	45
MlyI	GAGTC	2 cut(s)	101, 208
MmeI	TCCRAC	2 cut(s)	265, 501
MnlI	CCTC	9 cut(s)	76, 123, 137, 235, 311, 394, 418, 456, 513
MseI	TTAA	1 cut(s)	300
MspI	CCGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	3 cut(s)	277, 372, 523
NdeII	GATC	2 cut(s)	294, 322
NmuCI	GTSAC	1 cut(s)	211
NspV	TTCGAA	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	2 cut(s)	53, 96
PfeI	GAWTC	2 cut(s)	87, 187
PkrI	GCNGC	4 cut(s)	67, 106, 279, 525
PleI	GAGTC	2 cut(s)	100, 208
PpsI	GAGTC	2 cut(s)	100, 208
PshBI	ATTAAT	1 cut(s)	300
Psp124BI	GAGCTC	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	162
PstNI	CAGNNNCTG	1 cut(s)	523
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	4 cut(s)	66, 105, 278, 524
Sau3AI	GATC	2 cut(s)	294, 322
SchI	GAGTC	2 cut(s)	101, 208
SduI	GDGCHC	1 cut(s)	45
SfaNI	GCATC	1 cut(s)	535
SfcI	CTRYAG	1 cut(s)	198
SfuI	TTCGAA	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
SsiI	CCGC	1 cut(s)	278
SspMI	CTAG	1 cut(s)	236
SstI	GAGCTC	1 cut(s)	45
TaaI	ACNGT	3 cut(s)	15, 177, 221
TaiI	ACGT	2 cut(s)	285, 500
TaqI	TCGA	4 cut(s)	90, 99, 123, 345
TauI	GCSGC	1 cut(s)	280
TfiI	GAWTC	2 cut(s)	87, 187
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	224
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	3 cut(s)	65, 104, 523
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	224
VspI	ATTAAT	1 cut(s)	300
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.