Rorug04G0444500

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
60074258 .. 60074607
350 bp
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UTR
Exon/CDS
Intron
Rorug04G0444500.1

Sequence Viewer

Length: 228 bp
ATGACGGGTATGCCTCTCGACGAAGATCAGGTACAACTCCTCGATATCAAATCTGTTTGGGAGGGCATGGAAGAATGCAAGAAACTCGGCCTAGCAAGGGGCATTGGCGTCAGTAATTTCACCTCCAAGATGCTCGAGGAGCTCCTCTCCATCGCCAAAATCCCTCCTGCCATCAATCATGTGGAGATGAGCCCAGCTTGGCAGGTGAAGAAACTGAGGGAGTTTTGA

Protein Analysis

75

Amino Acids

8.46

Weight (kDa)

5.29

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 15 - 72 4.6e-10 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 193
Acc36I ACCTGC 1 cut(s) 193
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 97
AluBI AGCT 2 cut(s) 142, 197
AluI AGCT 2 cut(s) 142, 197
Alw21I GWGCWC 1 cut(s) 144
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 1 cut(s) 88
AsuHPI GGTGA 2 cut(s) 112, 217
AvaI CYCGRG 1 cut(s) 134
BanII GRGCYC 2 cut(s) 144, 194
BarI GAAGNNNNNNTAC 2 cut(s) 15, 47
Bbv12I GWGCWC 1 cut(s) 144
BccI CCATC 2 cut(s) 158, 179
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BfaI CTAG 1 cut(s) 92
BfuAI ACCTGC 1 cut(s) 193
BmeT110I CYCGRG 1 cut(s) 134
BmsI GCATC 1 cut(s) 120
BplI GAGNNNNNCTC 2 cut(s) 131, 163
BsaHI GRCGYC 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 97
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 206
BseRI GAGGAG 3 cut(s) 29, 134, 152
BseYI CCCAGC 1 cut(s) 193
BshFI GGCC 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 97
BsmI GAATGC 1 cut(s) 80
BsnI GGCC 1 cut(s) 90
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 2 cut(s) 144, 194
Bsp143I GATC 1 cut(s) 25
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 1 cut(s) 207
BspMI ACCTGC 1 cut(s) 193
BssMI GATC 1 cut(s) 25
BssNI GRCGYC 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 215
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 139
BsuRI GGCC 1 cut(s) 90
BtgZI GCGATG 1 cut(s) 136
BveI ACCTGC 1 cut(s) 193
CseI GACGC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 32
CviAII CATG 2 cut(s) 67, 179
CviJI RGCY 4 cut(s) 90, 142, 192, 197
CviKI_1 RGCY 4 cut(s) 90, 142, 192, 197
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 1 cut(s) 215
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Ecl136II GAGCTC 1 cut(s) 142
Eco24I GRGCYC 2 cut(s) 144, 194
Eco32I GATATC 1 cut(s) 46
Eco53kI GAGCTC 1 cut(s) 142
Eco88I CYCGRG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 142
EcoRV GATATC 1 cut(s) 46
EcoT38I GRGCYC 2 cut(s) 144, 194
FaeI CATG 2 cut(s) 70, 182
FaiI YATR 3 cut(s) 11, 68, 180
FatI CATG 2 cut(s) 66, 178
FriOI GRGCYC 2 cut(s) 144, 194
FspBI CTAG 1 cut(s) 92
GsaI CCCAGC 1 cut(s) 197
HaeIII GGCC 1 cut(s) 90
HgaI GACGC 1 cut(s) 97
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 2 cut(s) 70, 182
HphI GGTGA 2 cut(s) 112, 217
Hpy188III TCNNGA 1 cut(s) 17
Hpy99I CGWCG 1 cut(s) 23
HpyCH4V TGCA 1 cut(s) 78
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
HpyF3I CTNAG 1 cut(s) 215
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 2 cut(s) 70, 182
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 2 cut(s) 139, 147
LpnPI CCDG 4 cut(s) 14, 180, 188, 207
LweI GCATC 1 cut(s) 120
MaeI CTAG 1 cut(s) 92
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 3 cut(s) 35, 83, 220
MhlI GDGCHC 2 cut(s) 144, 194
MluCI AATT 1 cut(s) 115
MnlI CCTC 8 cut(s) 24, 50, 55, 130, 133, 155, 174, 210
Mva1269I GAATGC 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 139
NdeII GATC 1 cut(s) 25
NlaIII CATG 2 cut(s) 70, 182
NmeAIII GCCGAG 1 cut(s) 66
PaeR7I CTCGAG 1 cut(s) 134
PaqCI CACCTGC 1 cut(s) 193
PctI GAATGC 1 cut(s) 80
Psp124BI GAGCTC 1 cut(s) 144
PspFI CCCAGC 1 cut(s) 193
PspXI VCTCGAGB 1 cut(s) 134
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SacI GAGCTC 1 cut(s) 144
Sau3AI GATC 1 cut(s) 25
SduI GDGCHC 2 cut(s) 144, 194
SetI ASST 5 cut(s) 33, 125, 144, 199, 207
SfaNI GCATC 1 cut(s) 120
Sfr274I CTCGAG 1 cut(s) 134
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 1 cut(s) 115
SspMI CTAG 1 cut(s) 92
SstI GAGCTC 1 cut(s) 144
TaqI TCGA 3 cut(s) 18, 42, 135
TasI AATT 1 cut(s) 115
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.