Rh5DG071600

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
6181741 .. 6181971
231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG071600.1

Sequence Viewer

Length: 231 bp
ATGATGAGCGGTGATTTGAAAGTTGGAGTTGAAGTTGAGAAAGGGGATGAAGATGGATTGTTCACCAAGGAAGGTGTTTGCAAAGCTGTGAGAGCTGTGATGGATGAGGACAGTCAGGTTGGAAAGGAGGTGAGCACCAACCATGCCAAGTGGAGAGAGTTCATCTCCGGTAAAGGGCTTGAGAGCTCATATATTGATGGTTTTGTGCAGAAGTTGCATGACCTCCTATGA

Protein Analysis

76

Amino Acids

8.38

Weight (kDa)

4.87

Isoelectric Point (pI)

17.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 9
AciI CCGC 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 174
AgsI TTSAA 2 cut(s) 19, 32
AluBI AGCT 3 cut(s) 86, 95, 186
AluI AGCT 3 cut(s) 86, 95, 186
Alw21I GWGCWC 2 cut(s) 137, 188
AsuHPI GGTGA 3 cut(s) 23, 55, 142
BanII GRGCYC 1 cut(s) 188
Bbv12I GWGCWC 2 cut(s) 137, 188
BccI CCATC 3 cut(s) 47, 94, 191
BplI GAGNNNNNCTC 2 cut(s) 149, 181
BpuEI CTTGAG 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 66
BsaWI WCCGGW 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 2 cut(s) 52, 109
BseLI CCNNNNNNNGG 1 cut(s) 174
BsgI GTGCAG 1 cut(s) 227
BsiHKAI GWGCWC 2 cut(s) 137, 188
BsiSI CCGG 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 174
Bsp1286I GDGCHC 2 cut(s) 137, 188
BspACI CCGC 1 cut(s) 9
BsrBI CCGCTC 1 cut(s) 9
BssECI CCNNGG 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 113
BstAPI GCANNNNNTGC 1 cut(s) 214
BstF5I GGATG 2 cut(s) 52, 109
BstMWI GCNNNNNNNGC 2 cut(s) 92, 214
BtsCI GGATG 2 cut(s) 52, 109
CviAII CATG 2 cut(s) 143, 218
CviJI RGCY 4 cut(s) 86, 95, 178, 186
CviKI_1 RGCY 4 cut(s) 86, 95, 178, 186
Ecl136II GAGCTC 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 188
Eco53kI GAGCTC 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 66
EcoT38I GRGCYC 1 cut(s) 188
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 2 cut(s) 146, 221
FaiI YATR 5 cut(s) 144, 190, 192, 219, 229
FatI CATG 2 cut(s) 142, 217
FokI GGATG 2 cut(s) 59, 116
FriOI GRGCYC 1 cut(s) 188
HapII CCGG 1 cut(s) 168
Hin1II CATG 2 cut(s) 146, 221
HpaII CCGG 1 cut(s) 168
HphI GGTGA 3 cut(s) 23, 55, 142
Hpy166II GTNNAC 1 cut(s) 63
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 3 cut(s) 81, 208, 217
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 214
Hsp92II CATG 2 cut(s) 146, 221
LpnPI CCDG 2 cut(s) 101, 181
MbiI CCGCTC 1 cut(s) 9
MboII GAAGA 1 cut(s) 62
MhlI GDGCHC 2 cut(s) 137, 188
MmeI TCCRAC 2 cut(s) 4, 100
MnlI CCTC 2 cut(s) 100, 121
MspI CCGG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 92, 214
NlaIII CATG 2 cut(s) 146, 221
Psp124BI GAGCTC 1 cut(s) 188
SacI GAGCTC 1 cut(s) 188
SduI GDGCHC 2 cut(s) 137, 188
SetI ASST 7 cut(s) 76, 88, 97, 120, 132, 188, 225
SgeI CNNG 6 cut(s) 79, 128, 155, 160, 180, 191
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SsiI CCGC 1 cut(s) 9
SstI GAGCTC 1 cut(s) 188
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 113
TspDTI ATGAA 2 cut(s) 63, 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.