Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000510

Physical Location & Seq

Genomic Coordinates Forward (+)

6216648 .. 6217466

Gene Structure 819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG071700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCAAACATGGAATATGGTAGTGGTGTGACATTCGCCAAACGCCACTGGACCTCTTTCAGCAATTGTGATGCAATTTGTTTCCAAACTTGCAGAGAATTCACAGGGCCATTTTGTAACTATATAGAAATACAAATGAACAAGCCGGTCATTCTTGCAGGGCCAGTGGTGCCAGATCCGCCAAGTTCACAGTTGGAAGAGAAATGGGCAAAATGGCTTGGAGGGTTCGAACCTAGAACAGTGATTTTCAGTGCTTTTGGCAGTGAATGCGTTCTGAAGAAGGAACAGTTCCAAGAGTTGTTACTTGGTTTTGAGCTAACTGGTTTGCCATTCTTCGCTGTCCTGAAACCGCAAGCCGGAGTTGAATTAATTGACTCGGTACTGGCAGAAGGCTTTGAAGAGGGTGTAAAAGGAAAAGGAGTGGTTCATGGGGGTTGGGTTCAGCAGCCATTGATACTGAAGCACCCATCTGTGGGTTGCTTTGTGACTCACTGTGGTTCTGGGTCTTTAAACGAGGCGTTGCTGAATGAGTGCCAATTGGTGTTTCTGCCAAATTGGGCTGATCAGGTAATCAACGCGAGAATGATGAGCGATGATTTGAAAGTTGGAGTTGAAGTTGAGAAAGGGGATGAAGATGGATTGTTCACCAAGGAAGGGGTTTGCAAAGCTGTGAAAGCTGTGATGGATGAGAACAGTGAGGTTGGAAAGGAGGTGAGGTCCAACCATGCTAAGTGGAGGGAGTTCTTCTCCAATAAAGGAATTGACAGCTCATACATTGATGGTTTTCTGCAGAAGCTGCATGAAGTACTGCTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00942 map00942

Pfam Domains

Protein Families

UDPGT

Protein Analysis

272

Amino Acids

30.09

Weight (kDa)

5.08

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	146 - 232	5.6e-12	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000510)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica	MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica	Prupe.4G054800_v2.0.a1
pyrus_communis	pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis	RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata	RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora	Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa	Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha	Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana	Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	169
AccII	CGCG	1 cut(s)	578
AciI	CCGC	2 cut(s)	179, 350
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	2 cut(s)	296, 479
AfaI	GTAC	2 cut(s)	381, 807
AfiI	CCNNNNNNNGG	4 cut(s)	356, 472, 473, 654
AgsI	TTSAA	4 cut(s)	365, 398, 601, 614
AjuI	GAANNNNNNNTTGG	2 cut(s)	528, 560
AluBI	AGCT	5 cut(s)	316, 668, 677, 768, 796
AluI	AGCT	5 cut(s)	316, 668, 677, 768, 796
AlwI	GGATC	1 cut(s)	170
AlwNI	CAGNNNCTG	1 cut(s)	796
AoxI	GGCC	2 cut(s)	107, 161
ApeKI	GCWGC	2 cut(s)	445, 796
ApoI	RAATTY	1 cut(s)	98
AseI	ATTAAT	1 cut(s)	368
Asp700I	GAANNNNTTC	1 cut(s)	270
AspS9I	GGNCC	4 cut(s)	51, 107, 161, 717
AsuHPI	GGTGA	2 cut(s)	637, 724
AsuII	TTCGAA	1 cut(s)	228
AvaII	GGWCC	2 cut(s)	51, 717
BanI	GGYRCC	1 cut(s)	169
BbvI	GCAGC	2 cut(s)	457, 783
BccI	CCATC	4 cut(s)	475, 629, 676, 773
BclI	TGATCA	1 cut(s)	562
BfaI	CTAG	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	788
BisI	GCNGC	2 cut(s)	446, 797
BlsI	GCNGC	2 cut(s)	447, 798
BmcAI	AGTACT	1 cut(s)	807
Bme18I	GGWCC	2 cut(s)	51, 717
BmgT120I	GGNCC	4 cut(s)	51, 107, 161, 717
BmiI	GGNNCC	1 cut(s)	171
BmsI	GCATC	1 cut(s)	61
BplI	GAGNNNNNCTC	2 cut(s)	731, 763
Bpu14I	TTCGAA	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	648
BsaXI	ACNNNNNCTCC	4 cut(s)	600, 630, 701, 731
Bsc4I	CCNNNNNNNGG	4 cut(s)	356, 472, 473, 654
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	4 cut(s)	53, 164, 325, 387
BseDI	CCNNGG	1 cut(s)	648
BseGI	GGATG	2 cut(s)	634, 691
BseLI	CCNNNNNNNGG	4 cut(s)	356, 472, 473, 654
BseNI	ACTGG	4 cut(s)	53, 164, 325, 387
BseXI	GCAGC	2 cut(s)	457, 783
BseYI	CCCAGC	1 cut(s)	811
Bsh1236I	CGCG	1 cut(s)	578
BshFI	GGCC	2 cut(s)	109, 163
BshNI	GGYRCC	1 cut(s)	169
BsiSI	CCGG	2 cut(s)	146, 357
BslI	CCNNNNNNNGG	4 cut(s)	356, 472, 473, 654
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	2 cut(s)	109, 163
Bsp119I	TTCGAA	1 cut(s)	228
Bsp143I	GATC	2 cut(s)	175, 562
BspACI	CCGC	2 cut(s)	179, 350
BspANI	GGCC	2 cut(s)	109, 163
BspFNI	CGCG	1 cut(s)	578
BspLI	GGNNCC	1 cut(s)	171
BspMAI	CTGCAG	1 cut(s)	792
BspPI	GGATC	1 cut(s)	170
BspT104I	TTCGAA	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	169
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	4 cut(s)	53, 164, 325, 387
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	648
BssMI	GATC	2 cut(s)	175, 562
BssT1I	CCWWGG	1 cut(s)	648
Bst4CI	ACNGT	5 cut(s)	192, 241, 288, 494, 695
Bst6I	CTCTTC	2 cut(s)	192, 393
BstAPI	GCANNNNNTGC	2 cut(s)	267, 796
BstBI	TTCGAA	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	1 cut(s)	729
BstF5I	GGATG	2 cut(s)	634, 691
BstFNI	CGCG	1 cut(s)	578
BstKTI	GATC	2 cut(s)	178, 565
BstMBI	GATC	2 cut(s)	175, 562
BstMWI	GCNNNNNNNGC	5 cut(s)	169, 178, 267, 674, 796
BstSFI	CTRYAG	1 cut(s)	788
BstUI	CGCG	1 cut(s)	578
BstV1I	GCAGC	2 cut(s)	457, 783
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	2 cut(s)	109, 163
BtgZI	GCGATG	1 cut(s)	606
BtsCI	GGATG	2 cut(s)	634, 691
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	7 cut(s)	46, 171, 246, 256, 268, 490, 700
Cac8I	GCNNGC	1 cut(s)	354
CaiI	CAGNNNCTG	1 cut(s)	796
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	4 cut(s)	51, 107, 161, 717
Csp6I	GTAC	2 cut(s)	380, 806
CviAII	CATG	4 cut(s)	10, 428, 725, 800
CviQI	GTAC	2 cut(s)	380, 806
DdeI	CTNAG	1 cut(s)	729
DpnI	GATC	2 cut(s)	177, 564
DpnII	GATC	2 cut(s)	175, 562
DraI	TTTAAA	1 cut(s)	510
Eam1104I	CTCTTC	2 cut(s)	192, 393
EarI	CTCTTC	2 cut(s)	192, 393
EciI	GGCGGA	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	648
Eco47I	GGWCC	2 cut(s)	51, 717
Eco57I	CTGAAG	2 cut(s)	296, 479
EcoRI	GAATTC	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	648
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	4 cut(s)	13, 431, 728, 803
FaiI	YATR	8 cut(s)	11, 18, 123, 125, 429, 726, 772, 801
FatI	CATG	4 cut(s)	9, 427, 724, 799
FbaI	TGATCA	1 cut(s)	562
Fnu4HI	GCNGC	2 cut(s)	446, 797
FokI	GGATG	2 cut(s)	641, 698
Fsp4HI	GCNGC	2 cut(s)	446, 797
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	2 cut(s)	446, 797
GsaI	CCCAGC	1 cut(s)	815
HaeIII	GGCC	2 cut(s)	109, 163
HapII	CCGG	2 cut(s)	146, 357
Hin1II	CATG	4 cut(s)	13, 431, 728, 803
HinfI	GANTC	2 cut(s)	374, 487
HpaII	CCGG	2 cut(s)	146, 357
HphI	GGTGA	2 cut(s)	637, 724
Hpy166II	GTNNAC	2 cut(s)	188, 645
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	1 cut(s)	343
Hpy8I	GTNNAC	2 cut(s)	188, 645
HpyAV	CCTTC	3 cut(s)	274, 383, 647
HpyCH4III	ACNGT	5 cut(s)	192, 241, 288, 494, 695
HpyCH4V	TGCA	6 cut(s)	74, 93, 158, 663, 790, 799
HpyF10VI	GCNNNNNNNGC	5 cut(s)	169, 178, 267, 674, 796
HpyF3I	CTNAG	1 cut(s)	729
Hsp92II	CATG	4 cut(s)	13, 431, 728, 803
Ksp22I	TGATCA	1 cut(s)	562
Kzo9I	GATC	2 cut(s)	175, 562
Lsp1109I	GCAGC	2 cut(s)	457, 783
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	234
MaeIII	GTNAC	4 cut(s)	28, 116, 300, 484
MalI	GATC	2 cut(s)	177, 564
MboI	GATC	2 cut(s)	175, 562
MboII	GAAGA	6 cut(s)	209, 289, 325, 410, 644, 736
MfeI	CAATTG	2 cut(s)	64, 536
MflI	RGATCY	1 cut(s)	175
MluCI	AATT	8 cut(s)	64, 75, 98, 365, 369, 536, 553, 759
MlyI	GAGTC	2 cut(s)	368, 481
MmeI	TCCRAC	4 cut(s)	174, 586, 682, 744
MnlI	CCTC	8 cut(s)	64, 215, 394, 508, 691, 703, 708, 729
MroXI	GAANNNNTTC	1 cut(s)	270
MseI	TTAA	2 cut(s)	368, 509
MspI	CCGG	2 cut(s)	146, 357
MunI	CAATTG	2 cut(s)	64, 536
Mva1269I	GAATGC	1 cut(s)	272
MvnI	CGCG	1 cut(s)	578
MwoI	GCNNNNNNNGC	5 cut(s)	169, 178, 267, 674, 796
NdeII	GATC	2 cut(s)	175, 562
NlaIII	CATG	4 cut(s)	13, 431, 728, 803
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	2 cut(s)	28, 484
NspV	TTCGAA	1 cut(s)	228
PctI	GAATGC	1 cut(s)	272
PdmI	GAANNNNTTC	1 cut(s)	270
PkrI	GCNGC	2 cut(s)	447, 798
PleI	GAGTC	2 cut(s)	368, 481
PpsI	GAGTC	2 cut(s)	368, 481
PshBI	ATTAAT	1 cut(s)	368
PspFI	CCCAGC	1 cut(s)	811
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	4 cut(s)	51, 107, 161, 717
PstI	CTGCAG	1 cut(s)	792
PstNI	CAGNNNCTG	1 cut(s)	796
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	2 cut(s)	381, 807
RsaNI	GTAC	2 cut(s)	380, 806
SaqAI	TTAA	2 cut(s)	368, 509
SatI	GCNGC	2 cut(s)	446, 797
Sau3AI	GATC	2 cut(s)	175, 562
Sau96I	GGNCC	4 cut(s)	51, 107, 161, 717
ScaI	AGTACT	1 cut(s)	807
SchI	GAGTC	2 cut(s)	368, 481
SfaNI	GCATC	1 cut(s)	61
SfcI	CTRYAG	1 cut(s)	788
SfuI	TTCGAA	1 cut(s)	228
SinI	GGWCC	2 cut(s)	51, 717
Sse9I	AATT	8 cut(s)	64, 75, 98, 365, 369, 536, 553, 759
SsiI	CCGC	2 cut(s)	179, 350
SspMI	CTAG	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	5 cut(s)	192, 241, 288, 494, 695
TaqI	TCGA	1 cut(s)	228
TasI	AATT	8 cut(s)	64, 75, 98, 365, 369, 536, 553, 759
TatI	WGTACW	1 cut(s)	805
Tru1I	TTAA	2 cut(s)	368, 509
Tru9I	TTAA	2 cut(s)	368, 509
TscAI	CASTG	7 cut(s)	53, 171, 246, 256, 268, 497, 700
TseFI	GTSAC	2 cut(s)	28, 484
TseI	GCWGC	2 cut(s)	445, 796
Tsp45I	GTSAC	2 cut(s)	28, 484
TspDTI	ATGAA	4 cut(s)	152, 416, 645, 816
TspRI	CASTG	7 cut(s)	53, 171, 246, 256, 268, 497, 700
VpaK11BI	GGWCC	2 cut(s)	51, 717
VspI	ATTAAT	1 cut(s)	368
XapI	RAATTY	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	1 cut(s)	234
ZrmI	AGTACT	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.