FvH4_3g08341

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000510
Physical Location & Seq
Reverse (-)
4874625 .. 4877185
2561 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08341.t1

Sequence Viewer

Length: 1356 bp
ATGAGTGACCAAACCTTGCATATTGCCATGTATCCATGGTTTGCTATGGGTCATTTGACTGCATTCCTCCACATCTCCAACAAACTGGCAGAAAGAGGCAACAAGATCTCCTTCTTTTTACCTCTCAAAACTCGATCCAAGTTGCAACACTATAATCTCCACCCTCGTCTCATTACCTTCATTCCCCTCAGTGTCCCTCATGTCGATGGCCTCCCTTTGGGAACTGAAACCACAGCCGATATTGATCTCTCTTTGGGCTCTCTTCTTGCCACCGCCATGGACCTCACTCGACCCCAAATCGAGCAATCTCTCATCGAACTCAAGCCTGACTTTGTGTTCTTCGATCTTAGTTACTGGTTGCCTGCAATGTTGCGTGGACTAGCAACGAATATCAAGTCAATATATTACTCCGTAATCAATCCTGCAACTATATGGTTCGGCCTGCGAAATCTAGTCCTGCCAAGAAAAAATCAATTGGATGAAGCTTATCGTTCATTTTCAATCAAGTTACAAACTCACGAAGTTCGGGCCTATGATGCCATGATGAACATGAAATATGGCAGTGAGGTGACATTCAGCAAACGCTTAATGACCTCTCGCAGCGATTGTGACGCAATTTGTTTCCAAAGTTGCAGAGAACTCGCAGAGCCATTTTCAAACTATATTGAAATCCGGATGAACAAGCCGGTCATTCTTGCTGGGCCAGTGATGCCGGATCCCCCGAGTTCACAGTTGGAAGAGAAATGGGCAAGATGGCTTGGAGGGTTCGAACCGAGAACCGTGATTTTCTGTGCTCTTGGATCTGAATACATTCTCACAAAGCAACAACTGCAGCAACTATTATTGGGTTTTGAGCTTACTGGTTTCCCATTCTTCGCTGCCCTAAAACCGCCAACCGGAGTTGAATCAATTGAGTCGGCATTGCCAGAAGGGTTTGAAGAGCGTGTGAAAGGAAAAGGAGTGGTTTATGGGAGTTGGGTTCAGCAGCCTTTGATACTGAAGCACCCATCTGTGGGTTGCTTCGTGACTCACTGCGGTTCGGGGTCTTTAAACGAGGCGTTGCTGAATGAATGCCAATTGGTGTTTCTGCCAAACATATTAGATCAGATCATCAACGCAAGAATGATGAGCGGTGAATTGAAAGTGGGAGTTGAAGTTGAGAAAGGAGATGAAGATGGTTTGTTCACCAAGGAAGGTGTTTGCAAGGCTGTGAAAGCTGTGATGGATGAGAACAGTGAGGTTGGGAAGGAGGTGAAGATTAACCATGCCAAGTGGAGAGAGTTCCTCTCCAGTAAAGGGCTTGAGAGCTCATACATCGATGATTTTGTGCAGAAGCTCCATAAACTGTTAGGATGA

Protein Analysis

452

Amino Acids

50.78

Weight (kDa)

6.29

Isoelectric Point (pI)

49.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 325 - 412 1.2e-10 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1131
AccIII TCCGGA 1 cut(s) 672
AciI CCGC 4 cut(s) 273, 890, 1035, 1131
AclWI GGATC 4 cut(s) 129, 710, 723, 808
AcuI CTGAAG 1 cut(s) 1019
AfiI CCNNNNNNNGG 5 cut(s) 217, 896, 1012, 1013, 1296
AgsI TTSAA 7 cut(s) 501, 657, 668, 905, 938, 1141, 1154
AjuI GAANNNNNNNTTGG 2 cut(s) 1068, 1100
AluBI AGCT 5 cut(s) 485, 856, 1217, 1308, 1336
AluI AGCT 5 cut(s) 485, 856, 1217, 1308, 1336
Alw21I GWGCWC 2 cut(s) 796, 1310
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 4 cut(s) 129, 710, 723, 808
Ama87I CYCGRG 1 cut(s) 721
Aor13HI TCCGGA 1 cut(s) 672
AoxI GGCC 4 cut(s) 208, 439, 528, 701
ApeKI GCWGC 4 cut(s) 600, 832, 878, 985
ArsI GACNNNNNNTTYG 2 cut(s) 380, 412
Asp700I GAANNNNTTC 1 cut(s) 810
AspS9I GGNCC 3 cut(s) 280, 528, 701
AsuHPI GGTGA 4 cut(s) 580, 1145, 1177, 1264
AsuII TTCGAA 1 cut(s) 768
AvaI CYCGRG 1 cut(s) 721
AvaII GGWCC 1 cut(s) 280
BamHI GGATCC 1 cut(s) 715
BanII GRGCYC 2 cut(s) 260, 1310
Bbv12I GWGCWC 2 cut(s) 796, 1310
BbvI GCAGC 4 cut(s) 612, 844, 865, 997
BccI CCATC 5 cut(s) 200, 747, 1015, 1169, 1216
BcgI CGANNNNNNTGC 2 cut(s) 622, 656
BciVI GTATCC 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 2 cut(s) 380, 452
BfmI CTRYAG 1 cut(s) 830
BfuI GTATCC 1 cut(s) 42
BglII AGATCT 1 cut(s) 105
BisI GCNGC 4 cut(s) 601, 833, 879, 986
BlsI GCNGC 4 cut(s) 602, 834, 880, 987
Bme18I GGWCC 1 cut(s) 280
BmeT110I CYCGRG 1 cut(s) 721
BmgT120I GGNCC 3 cut(s) 280, 528, 701
BmiI GGNNCC 1 cut(s) 717
BmsI GCATC 2 cut(s) 526, 699
BplI GAGNNNNNCTC 4 cut(s) 1269, 1301, 1271, 1303
BpmI CTGGAG 1 cut(s) 1273
Bpu14I TTCGAA 1 cut(s) 768
BpuEI CTTGAG 2 cut(s) 305, 1322
Bsa29I ATCGAT 1 cut(s) 1317
BsaBI GATNNNNATC 1 cut(s) 243
BsaJI CCNNGG 3 cut(s) 35, 276, 1188
BsaWI WCCGGW 2 cut(s) 672, 896
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 1140, 1170
Bsc4I CCNNNNNNNGG 5 cut(s) 217, 896, 1012, 1013, 1296
Bse118I RCCGGY 1 cut(s) 685
Bse1I ACTGG 5 cut(s) 90, 359, 704, 865, 1290
Bse3DI GCAATG 2 cut(s) 372, 920
Bse8I GATNNNNATC 1 cut(s) 243
BseAI TCCGGA 1 cut(s) 672
BseCI ATCGAT 1 cut(s) 1317
BseDI CCNNGG 3 cut(s) 35, 276, 1188
BseGI GGATG 3 cut(s) 484, 681, 1231
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 5 cut(s) 217, 896, 1012, 1013, 1296
BseMI GCAATG 2 cut(s) 372, 920
BseMII CTCAG 1 cut(s) 202
BseNI ACTGG 5 cut(s) 90, 359, 704, 865, 1290
BseXI GCAGC 4 cut(s) 612, 844, 865, 997
BseYI CCCAGC 1 cut(s) 698
BsgI GTGCAG 1 cut(s) 1349
BshFI GGCC 4 cut(s) 210, 441, 530, 703
BshVI ATCGAT 1 cut(s) 1317
BsiHKAI GWGCWC 2 cut(s) 796, 1310
BsiHKCI CYCGRG 1 cut(s) 721
BsiSI CCGG 4 cut(s) 673, 686, 713, 897
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 5 cut(s) 217, 896, 1012, 1013, 1296
BsmAI GTCTC 1 cut(s) 173
BsmBI CGTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 179
BsmI GAATGC 2 cut(s) 62, 1076
BsnI GGCC 4 cut(s) 210, 441, 530, 703
BsoBI CYCGRG 1 cut(s) 721
Bsp119I TTCGAA 1 cut(s) 768
Bsp1286I GDGCHC 3 cut(s) 260, 796, 1310
Bsp13I TCCGGA 1 cut(s) 672
Bsp143I GATC 8 cut(s) 105, 134, 244, 343, 715, 800, 1102, 1107
Bsp19I CCATGG 2 cut(s) 35, 276
BspACI CCGC 4 cut(s) 273, 890, 1035, 1131
BspANI GGCC 4 cut(s) 210, 441, 530, 703
BspCNI CTCAG 1 cut(s) 201
BspDI ATCGAT 1 cut(s) 1317
BspEI TCCGGA 1 cut(s) 672
BspLI GGNNCC 1 cut(s) 717
BspMAI CTGCAG 1 cut(s) 834
BspPI GGATC 4 cut(s) 129, 710, 723, 808
BspQI GCTCTTC 1 cut(s) 933
BspT104I TTCGAA 1 cut(s) 768
BsrBI CCGCTC 1 cut(s) 1131
BsrDI GCAATG 2 cut(s) 372, 920
BsrFI RCCGGY 1 cut(s) 685
BsrI ACTGG 5 cut(s) 90, 359, 704, 865, 1290
BssAI RCCGGY 1 cut(s) 685
BssECI CCNNGG 3 cut(s) 35, 276, 1188
BssMI GATC 8 cut(s) 105, 134, 244, 343, 715, 800, 1102, 1107
BssT1I CCWWGG 3 cut(s) 35, 276, 1188
Bst4CI ACNGT 4 cut(s) 732, 781, 1235, 1347
Bst6I CTCTTC 3 cut(s) 267, 732, 933
BstAPI GCANNNNNTGC 1 cut(s) 829
BstBI TTCGAA 1 cut(s) 768
BstC8I GCNNGC 2 cut(s) 363, 443
BstDEI CTNAG 2 cut(s) 188, 347
BstDSI CCRYGG 2 cut(s) 35, 276
BstF5I GGATG 3 cut(s) 484, 681, 1231
BstKTI GATC 8 cut(s) 108, 137, 247, 346, 718, 803, 1105, 1110
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 8 cut(s) 105, 134, 244, 343, 715, 800, 1102, 1107
BstMWI GCNNNNNNNGC 4 cut(s) 536, 709, 829, 1214
BstSFI CTRYAG 1 cut(s) 830
BstV1I GCAGC 4 cut(s) 612, 844, 865, 997
BstX2I RGATCY 3 cut(s) 105, 715, 800
BstXI CCANNNNNNTGG 2 cut(s) 85, 277
BstYI RGATCY 3 cut(s) 105, 715, 800
Bsu15I ATCGAT 1 cut(s) 1317
BsuI GTATCC 1 cut(s) 42
BsuRI GGCC 4 cut(s) 210, 441, 530, 703
BsuTUI ATCGAT 1 cut(s) 1317
BtgI CCRYGG 2 cut(s) 35, 276
BtsCI GGATG 3 cut(s) 484, 681, 1231
BtsI GCAGTG 2 cut(s) 568, 1030
BtsIMutI CAGTG 5 cut(s) 196, 568, 711, 1030, 1240
Cac8I GCNNGC 2 cut(s) 363, 443
Cfr10I RCCGGY 1 cut(s) 685
Cfr13I GGNCC 3 cut(s) 280, 528, 701
ClaI ATCGAT 1 cut(s) 1317
CseI GACGC 1 cut(s) 620
CviAII CATG 7 cut(s) 28, 36, 200, 277, 541, 550, 1265
DdeI CTNAG 2 cut(s) 188, 347
DpnI GATC 8 cut(s) 107, 136, 246, 345, 717, 802, 1104, 1109
DpnII GATC 8 cut(s) 105, 134, 244, 343, 715, 800, 1102, 1107
DraI TTTAAA 1 cut(s) 1050
Eam1104I CTCTTC 3 cut(s) 267, 732, 933
EarI CTCTTC 3 cut(s) 267, 732, 933
Ecl136II GAGCTC 1 cut(s) 1308
Eco130I CCWWGG 3 cut(s) 35, 276, 1188
Eco24I GRGCYC 2 cut(s) 260, 1310
Eco47I GGWCC 1 cut(s) 280
Eco53kI GAGCTC 1 cut(s) 1308
Eco57I CTGAAG 1 cut(s) 1019
Eco88I CYCGRG 1 cut(s) 721
EcoICRI GAGCTC 1 cut(s) 1308
EcoT14I CCWWGG 3 cut(s) 35, 276, 1188
EcoT38I GRGCYC 2 cut(s) 260, 1310
ErhI CCWWGG 3 cut(s) 35, 276, 1188
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 7 cut(s) 31, 39, 203, 280, 544, 553, 1268
FalI AAGNNNNNCTT 4 cut(s) 95, 127, 314, 346
FaqI GGGAC 1 cut(s) 179
FatI CATG 7 cut(s) 27, 35, 199, 276, 540, 549, 1264
Fnu4HI GCNGC 4 cut(s) 601, 833, 879, 986
FokI GGATG 3 cut(s) 491, 688, 1238
FriOI GRGCYC 2 cut(s) 260, 1310
Fsp4HI GCNGC 4 cut(s) 601, 833, 879, 986
FspBI CTAG 2 cut(s) 380, 452
GluI GCNGC 4 cut(s) 601, 833, 879, 986
GsaI CCCAGC 1 cut(s) 702
GsuI CTGGAG 1 cut(s) 1273
HaeIII GGCC 4 cut(s) 210, 441, 530, 703
HapII CCGG 4 cut(s) 673, 686, 713, 897
HgaI GACGC 1 cut(s) 620
Hin1II CATG 7 cut(s) 31, 39, 203, 280, 544, 553, 1268
HindIII AAGCTT 1 cut(s) 483
HinfI GANTC 3 cut(s) 905, 914, 1027
HpaII CCGG 4 cut(s) 673, 686, 713, 897
HphI GGTGA 4 cut(s) 580, 1145, 1177, 1264
Hpy166II GTNNAC 3 cut(s) 377, 728, 1185
Hpy188I TCNGA 2 cut(s) 805, 1107
Hpy188III TCNNGA 3 cut(s) 518, 673, 1024
Hpy8I GTNNAC 3 cut(s) 377, 728, 1185
HpyAV CCTTC 5 cut(s) 121, 187, 923, 1187, 1240
HpyCH4III ACNGT 4 cut(s) 732, 781, 1235, 1347
HpyCH4V TGCA 9 cut(s) 19, 62, 145, 365, 425, 633, 832, 1203, 1330
HpyF10VI GCNNNNNNNGC 4 cut(s) 536, 709, 829, 1214
HpyF3I CTNAG 2 cut(s) 188, 347
Hsp92II CATG 7 cut(s) 31, 39, 203, 280, 544, 553, 1268
Kpn2I TCCGGA 1 cut(s) 672
Kzo9I GATC 8 cut(s) 105, 134, 244, 343, 715, 800, 1102, 1107
LguI GCTCTTC 1 cut(s) 933
LmnI GCTCC 1 cut(s) 1341
Lsp1109I GCAGC 4 cut(s) 612, 844, 865, 997
LweI GCATC 2 cut(s) 526, 699
MaeI CTAG 2 cut(s) 380, 452
MaeIII GTNAC 6 cut(s) 5, 350, 507, 568, 608, 1024
MalI GATC 8 cut(s) 107, 136, 246, 345, 717, 802, 1104, 1109
MbiI CCGCTC 1 cut(s) 1131
MboI GATC 8 cut(s) 105, 134, 244, 343, 715, 800, 1102, 1107
MboII GAAGA 7 cut(s) 254, 331, 749, 865, 950, 1184, 1267
MfeI CAATTG 3 cut(s) 473, 909, 1076
MflI RGATCY 3 cut(s) 105, 715, 800
MhlI GDGCHC 3 cut(s) 260, 796, 1310
MluCI AATT 5 cut(s) 473, 615, 909, 1076, 1136
MlyI GAGTC 2 cut(s) 923, 1021
MmeI TCCRAC 2 cut(s) 102, 714
MroI TCCGGA 1 cut(s) 672
MroXI GAANNNNTTC 1 cut(s) 810
MseI TTAA 3 cut(s) 587, 1049, 1260
MslI CAYNNNNRTG 2 cut(s) 204, 275
MspI CCGG 4 cut(s) 673, 686, 713, 897
MunI CAATTG 3 cut(s) 473, 909, 1076
Mva1269I GAATGC 2 cut(s) 62, 1076
MwoI GCNNNNNNNGC 4 cut(s) 536, 709, 829, 1214
NcoI CCATGG 2 cut(s) 35, 276
NdeII GATC 8 cut(s) 105, 134, 244, 343, 715, 800, 1102, 1107
NlaIII CATG 7 cut(s) 31, 39, 203, 280, 544, 553, 1268
NlaIV GGNNCC 1 cut(s) 717
NmuCI GTSAC 4 cut(s) 5, 568, 608, 1024
NspV TTCGAA 1 cut(s) 768
PciSI GCTCTTC 1 cut(s) 933
PctI GAATGC 2 cut(s) 62, 1076
PdmI GAANNNNTTC 1 cut(s) 810
PfeI GAWTC 1 cut(s) 905
PkrI GCNGC 4 cut(s) 602, 834, 880, 987
PleI GAGTC 2 cut(s) 922, 1021
PpsI GAGTC 2 cut(s) 922, 1021
Psp124BI GAGCTC 1 cut(s) 1310
PspFI CCCAGC 1 cut(s) 698
PspN4I GGNNCC 1 cut(s) 717
PspPI GGNCC 3 cut(s) 280, 528, 701
PstI CTGCAG 1 cut(s) 834
PsuI RGATCY 3 cut(s) 105, 715, 800
RseI CAYNNNNRTG 2 cut(s) 204, 275
SacI GAGCTC 1 cut(s) 1310
SapI GCTCTTC 1 cut(s) 933
SaqAI TTAA 3 cut(s) 587, 1049, 1260
SatI GCNGC 4 cut(s) 601, 833, 879, 986
Sau3AI GATC 8 cut(s) 105, 134, 244, 343, 715, 800, 1102, 1107
Sau96I GGNCC 3 cut(s) 280, 528, 701
SchI GAGTC 2 cut(s) 923, 1021
SduI GDGCHC 3 cut(s) 260, 796, 1310
SfaNI GCATC 2 cut(s) 526, 699
SfcI CTRYAG 1 cut(s) 830
SfuI TTCGAA 1 cut(s) 768
SinI GGWCC 1 cut(s) 280
SmiMI CAYNNNNRTG 2 cut(s) 204, 275
SmlI CTYRAG 2 cut(s) 320, 1301
SmoI CTYRAG 2 cut(s) 320, 1301
Sse9I AATT 5 cut(s) 473, 615, 909, 1076, 1136
SsiI CCGC 4 cut(s) 273, 890, 1035, 1131
SspMI CTAG 2 cut(s) 380, 452
SstI GAGCTC 1 cut(s) 1310
StyI CCWWGG 3 cut(s) 35, 276, 1188
TaaI ACNGT 4 cut(s) 732, 781, 1235, 1347
TaqI TCGA 8 cut(s) 133, 204, 289, 300, 315, 342, 768, 1317
TasI AATT 5 cut(s) 473, 615, 909, 1076, 1136
TfiI GAWTC 1 cut(s) 905
Tru1I TTAA 3 cut(s) 587, 1049, 1260
Tru9I TTAA 3 cut(s) 587, 1049, 1260
TscAI CASTG 5 cut(s) 196, 568, 711, 1037, 1240
TseFI GTSAC 4 cut(s) 5, 568, 608, 1024
TseI GCWGC 4 cut(s) 600, 832, 878, 985
Tsp45I GTSAC 4 cut(s) 5, 568, 608, 1024
TspDTI ATGAA 8 cut(s) 169, 483, 495, 560, 566, 692, 1083, 1185
TspGWI ACGGA 1 cut(s) 400
TspRI CASTG 5 cut(s) 196, 568, 711, 1037, 1240
VpaK11BI GGWCC 1 cut(s) 280
XmnI GAANNNNTTC 1 cut(s) 810
XspI CTAG 2 cut(s) 380, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.