Rmu_co8399121.1_g000001

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8399121.1
OG0000510
Physical Location & Seq
Reverse (-)
220 .. 1161
942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8399121.1_g000001.1.cds

Sequence Viewer

Length: 942 bp
ctgctaagcccggagaggaaactgagtgagaaaccattggtcgaatctgactataaggaggctccatcatcattcccttcgtcttcaatcaagttacaaacccacgaagctcgaggtctagtcagtctcacaaacgaggaatttggccgtggggtaacattcttcaagcgccagttgacctcactcagtgattgtgatgccattgctttcaaaacttgtagagaattcgaagggccattttgtgactatcttgaaacccaaatgagaaagccggtcattcttgcagggccagtggtgccagatcccccaagttcacagttggaggataaatgggaaaaatggcttggaggattccaacccaaaacagtgattttctgtgcttttggcagtgaatgcgttctgaaaaaggaacagttccaagaactgttactaggttttgagctaactggtttgccattcttcgctgccctgaaaccgccagccggagttgaatcaattgaattggcactgccagaaggttttgaaatgcgtgtaaaaggaaaaggggtagttcatggggattgggttcagcagcctttgatactgaagcacccatctgtgggttgctttgtgactcactgcggttcggggtctttatccgaggcgttagtgaataagtgccaattggtgcttctgccacataagggagatcagattatcaacgcgagaatgatgagtgttgatttgaaggtgggagttgaagttgaaaaaggagatgaagatggcttgttcaccaaggaaggtgtttgcagagctgtgaaggcagtgatggatgaggacagtgaggtgggaaaggaggtgaggacaaaccatgctaagtggagggagttcttctccaataaagggcttgagagctcatacattgatgcttttgtgcaggagctgcacgaactgctagggtga

Protein Analysis

313

Amino Acids

34.74

Weight (kDa)

5.34

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 295
AccII CGCG 1 cut(s) 704
AciI CCGC 2 cut(s) 476, 621
AclWI GGATC 1 cut(s) 296
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 2 cut(s) 140, 224
AcuI CTGAAG 1 cut(s) 605
AdeI CACNNNGTG 1 cut(s) 188
AfiI CCNNNNNNNGG 5 cut(s) 482, 598, 599, 683, 882
AjuI GAANNNNNNNTTGG 4 cut(s) 327, 359, 654, 686
AluBI AGCT 5 cut(s) 110, 442, 794, 894, 922
AluI AGCT 5 cut(s) 110, 442, 794, 894, 922
Alw21I GWGCWC 1 cut(s) 896
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 1 cut(s) 296
AlwNI CAGNNNCTG 1 cut(s) 922
Ama87I CYCGRG 1 cut(s) 111
AoxI GGCC 3 cut(s) 145, 233, 287
ApeKI GCWGC 3 cut(s) 464, 571, 922
ApoI RAATTY 2 cut(s) 140, 224
Asp700I GAANNNNTTC 1 cut(s) 396
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 2 cut(s) 233, 287
AsuC2I CCSGG 1 cut(s) 11
AsuHPI GGTGA 2 cut(s) 763, 850
AsuII TTCGAA 1 cut(s) 228
AvaI CYCGRG 1 cut(s) 111
BanI GGYRCC 1 cut(s) 295
BanII GRGCYC 1 cut(s) 896
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 896
BbvI GCAGC 3 cut(s) 451, 583, 909
BccI CCATC 4 cut(s) 73, 601, 755, 802
BceAI ACGGC 1 cut(s) 132
BcnI CCSGG 1 cut(s) 11
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 3 cut(s) 119, 431, 935
BfoI RGCGCY 1 cut(s) 172
BisI GCNGC 3 cut(s) 465, 572, 923
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 3 cut(s) 466, 573, 924
Bme1390I CCNGG 1 cut(s) 11
BmeT110I CYCGRG 1 cut(s) 111
BmgT120I GGNCC 2 cut(s) 233, 287
BmiI GGNNCC 2 cut(s) 63, 297
BmrFI CCNGG 1 cut(s) 11
BmsI GCATC 2 cut(s) 187, 895
BpiI GAAGAC 1 cut(s) 75
BplI GAGNNNNNCTC 2 cut(s) 857, 889
Bpu1102I GCTNAGC 1 cut(s) 5
Bpu14I TTCGAA 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 908
BpuMI CCSGG 1 cut(s) 11
BsaJI CCNNGG 3 cut(s) 148, 639, 774
BsaXI ACNNNNNCTCC 2 cut(s) 726, 756
Bsc4I CCNNNNNNNGG 5 cut(s) 482, 598, 599, 683, 882
Bse118I RCCGGY 1 cut(s) 271
Bse1I ACTGG 3 cut(s) 172, 290, 451
Bse3DI GCAATG 1 cut(s) 201
BseDI CCNNGG 3 cut(s) 148, 639, 774
BseGI GGATG 1 cut(s) 817
BseLI CCNNNNNNNGG 5 cut(s) 482, 598, 599, 683, 882
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 2 cut(s) 14, 199
BseNI ACTGG 3 cut(s) 172, 290, 451
BseXI GCAGC 3 cut(s) 451, 583, 909
BsgI GTGCAG 2 cut(s) 908, 935
Bsh1236I CGCG 1 cut(s) 704
BshFI GGCC 3 cut(s) 147, 235, 289
BshNI GGYRCC 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 896
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 3 cut(s) 11, 272, 483
BslI CCNNNNNNNGG 5 cut(s) 482, 598, 599, 683, 882
BsmAI GTCTC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 398
BsnI GGCC 3 cut(s) 147, 235, 289
BsoBI CYCGRG 1 cut(s) 111
Bsp119I TTCGAA 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 896
Bsp143I GATC 2 cut(s) 301, 688
Bsp1720I GCTNAGC 1 cut(s) 5
BspACI CCGC 2 cut(s) 476, 621
BspANI GGCC 3 cut(s) 147, 235, 289
BspCNI CTCAG 2 cut(s) 15, 198
BspFNI CGCG 1 cut(s) 704
BspLI GGNNCC 2 cut(s) 63, 297
BspPI GGATC 1 cut(s) 296
BspT104I TTCGAA 1 cut(s) 228
BspT107I GGYRCC 1 cut(s) 295
BsrDI GCAATG 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 271
BsrI ACTGG 3 cut(s) 172, 290, 451
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 3 cut(s) 148, 639, 774
BssMI GATC 2 cut(s) 301, 688
BssT1I CCWWGG 1 cut(s) 774
Bst4CI ACNGT 5 cut(s) 318, 367, 414, 426, 821
BstAPI GCANNNNNTGC 3 cut(s) 393, 922, 931
BstBI TTCGAA 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 4 cut(s) 5, 23, 185, 855
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 1 cut(s) 817
BstFNI CGCG 1 cut(s) 704
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 2 cut(s) 304, 691
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 2 cut(s) 301, 688
BstMWI GCNNNNNNNGC 5 cut(s) 295, 393, 800, 922, 931
BstSCI CCNGG 1 cut(s) 9
BstUI CGCG 1 cut(s) 704
BstV1I GCAGC 3 cut(s) 451, 583, 909
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BsuRI GGCC 3 cut(s) 147, 235, 289
BtgI CCRYGG 1 cut(s) 148
BtsCI GGATG 1 cut(s) 817
BtsI GCAGTG 4 cut(s) 394, 506, 616, 810
BtsIMutI CAGTG 8 cut(s) 193, 297, 372, 394, 506, 616, 810, 826
Cac8I GCNNGC 1 cut(s) 480
CaiI CAGNNNCTG 1 cut(s) 922
CfoI GCGC 1 cut(s) 171
Cfr10I RCCGGY 1 cut(s) 271
Cfr13I GGNCC 2 cut(s) 233, 287
CviAII CATG 2 cut(s) 554, 851
DdeI CTNAG 4 cut(s) 5, 23, 185, 855
DpnI GATC 2 cut(s) 303, 690
DpnII GATC 2 cut(s) 301, 688
DraIII CACNNNGTG 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 145
Ecl136II GAGCTC 1 cut(s) 894
Eco130I CCWWGG 1 cut(s) 774
Eco24I GRGCYC 1 cut(s) 896
Eco53kI GAGCTC 1 cut(s) 894
Eco57I CTGAAG 1 cut(s) 605
Eco88I CYCGRG 1 cut(s) 111
EcoICRI GAGCTC 1 cut(s) 894
EcoRI GAATTC 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 774
EcoT38I GRGCYC 1 cut(s) 896
ErhI CCWWGG 1 cut(s) 774
FaeI CATG 2 cut(s) 557, 854
FaiI YATR 5 cut(s) 54, 555, 681, 852, 898
FatI CATG 2 cut(s) 553, 850
Fnu4HI GCNGC 3 cut(s) 465, 572, 923
FokI GGATG 1 cut(s) 824
FriOI GRGCYC 1 cut(s) 896
Fsp4HI GCNGC 3 cut(s) 465, 572, 923
FspBI CTAG 3 cut(s) 119, 431, 935
GlaI GCGC 1 cut(s) 170
GluI GCNGC 3 cut(s) 465, 572, 923
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 3 cut(s) 147, 235, 289
HapII CCGG 3 cut(s) 11, 272, 483
HhaI GCGC 1 cut(s) 171
Hin1II CATG 2 cut(s) 557, 854
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HincII GTYRAC 1 cut(s) 177
HindII GTYRAC 1 cut(s) 177
HinfI GANTC 4 cut(s) 44, 351, 491, 613
HpaII CCGG 3 cut(s) 11, 272, 483
HphI GGTGA 2 cut(s) 763, 850
Hpy166II GTNNAC 3 cut(s) 177, 314, 771
Hpy188I TCNGA 4 cut(s) 49, 402, 640, 693
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 3 cut(s) 177, 314, 771
HpyAV CCTTC 6 cut(s) 87, 224, 509, 721, 773, 793
HpyCH4III ACNGT 5 cut(s) 318, 367, 414, 426, 821
HpyCH4V TGCA 4 cut(s) 284, 789, 916, 925
HpyF10VI GCNNNNNNNGC 5 cut(s) 295, 393, 800, 922, 931
HpyF3I CTNAG 4 cut(s) 5, 23, 185, 855
Hsp92II CATG 2 cut(s) 557, 854
HspAI GCGC 1 cut(s) 169
Kzo9I GATC 2 cut(s) 301, 688
LmnI GCTCC 2 cut(s) 67, 919
Lsp1109I GCAGC 3 cut(s) 451, 583, 909
LweI GCATC 2 cut(s) 187, 895
MaeI CTAG 3 cut(s) 119, 431, 935
MaeIII GTNAC 5 cut(s) 93, 154, 242, 426, 610
MalI GATC 2 cut(s) 303, 690
MboI GATC 2 cut(s) 301, 688
MboII GAAGA 5 cut(s) 75, 154, 451, 770, 862
MfeI CAATTG 2 cut(s) 495, 662
MflI RGATCY 1 cut(s) 301
MhlI GDGCHC 1 cut(s) 896
MluCI AATT 5 cut(s) 140, 224, 495, 500, 662
MlyI GAGTC 1 cut(s) 607
MmeI TCCRAC 2 cut(s) 300, 379
MroXI GAANNNNTTC 1 cut(s) 396
MspI CCGG 3 cut(s) 11, 272, 483
MspR9I CCNGG 1 cut(s) 11
MunI CAATTG 2 cut(s) 495, 662
Mva1269I GAATGC 1 cut(s) 398
MvnI CGCG 1 cut(s) 704
MwoI GCNNNNNNNGC 5 cut(s) 295, 393, 800, 922, 931
NciI CCSGG 1 cut(s) 11
NdeII GATC 2 cut(s) 301, 688
NlaIII CATG 2 cut(s) 557, 854
NlaIV GGNNCC 2 cut(s) 63, 297
NmuCI GTSAC 2 cut(s) 242, 610
NspV TTCGAA 1 cut(s) 228
PaeR7I CTCGAG 1 cut(s) 111
PctI GAATGC 1 cut(s) 398
PdmI GAANNNNTTC 1 cut(s) 396
PfeI GAWTC 3 cut(s) 44, 351, 491
PkrI GCNGC 3 cut(s) 466, 573, 924
PleI GAGTC 1 cut(s) 607
PpsI GAGTC 1 cut(s) 607
Psp124BI GAGCTC 1 cut(s) 896
PspN4I GGNNCC 2 cut(s) 63, 297
PspPI GGNCC 2 cut(s) 233, 287
PspXI VCTCGAGB 1 cut(s) 111
PstNI CAGNNNCTG 1 cut(s) 922
PsuI RGATCY 1 cut(s) 301
SacI GAGCTC 1 cut(s) 896
SatI GCNGC 3 cut(s) 465, 572, 923
Sau3AI GATC 2 cut(s) 301, 688
Sau96I GGNCC 2 cut(s) 233, 287
SchI GAGTC 1 cut(s) 607
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 1 cut(s) 896
SfaNI GCATC 2 cut(s) 187, 895
Sfr274I CTCGAG 1 cut(s) 111
SfuI TTCGAA 1 cut(s) 228
SlaI CTCGAG 1 cut(s) 111
SmlI CTYRAG 2 cut(s) 111, 887
SmoI CTYRAG 2 cut(s) 111, 887
Sse9I AATT 5 cut(s) 140, 224, 495, 500, 662
SsiI CCGC 2 cut(s) 476, 621
SspMI CTAG 3 cut(s) 119, 431, 935
SstI GAGCTC 1 cut(s) 896
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 774
TaaI ACNGT 5 cut(s) 318, 367, 414, 426, 821
TaqI TCGA 3 cut(s) 42, 112, 228
TasI AATT 5 cut(s) 140, 224, 495, 500, 662
TfiI GAWTC 3 cut(s) 44, 351, 491
TscAI CASTG 8 cut(s) 193, 297, 372, 394, 513, 623, 810, 826
TseFI GTSAC 2 cut(s) 242, 610
TseI GCWGC 3 cut(s) 464, 571, 922
Tsp45I GTSAC 2 cut(s) 242, 610
TspDTI ATGAA 2 cut(s) 542, 771
TspRI CASTG 8 cut(s) 193, 297, 372, 394, 513, 623, 810, 826
XapI RAATTY 2 cut(s) 140, 224
XhoI CTCGAG 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 3 cut(s) 119, 431, 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.