Rroxscaffold_6G00429480

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000510
Physical Location & Seq
Reverse (-)
49745128 .. 49746234
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00429480.1

Sequence Viewer

Length: 1107 bp
ATGGACCTCACTCGCCCCCAAATTGAGAAATTTCTCCGAGAACTCAAACCGAATTTGGTCTTCTACGATTTCACTCATTGGTTGCCCCAACTGTTGCGTGAGCTGGACGGCAACATGAAGTCAGTCCACTACTGCATTATTAGCCCCGTGACAATAGGGTACCTTCTAAGCCCGGAGAGGAAGCTAACCGAAAAACCGTTGGTGGCAACTGATCTATTAGAGGCTCCTACGTCATTTCCTTCTTCATCCATCAAGTTGCGGACACATGAAGCTCGAGGACTAACCTATGTGACAAACCTGGAATACGGGCGTGGGATAACATTTCTTCAACGCCAACTGACCGCTTTGGCCGAATGTGATGCCATTGGTTTCAAGACATGTAAAGAATTCGAAGGGAAGTTTTGTGATTACCTAGAAGTGCAGATGAAGAAGCCAGTGATTCTCGCGGGGCCGGTGGTGCCGGCCCCTCCAAGCTCGGCGTTGGAAGAGAAATGGGCAGAGTGGCTCGGAGGGTTTGAGCCAAGAAGTGTGATTTTTTGTGCTTTCGGAAGTGAATGCGTGCTGAAGAAGGAACAGTTGCAAGAACTGGTGTTGGGATTCGAGCTCACGGGTCTCCCGTTCTTCGCAGCGTTGAAAACGCCTGAGGGATTCGAGTCCATCGAAGCTTCATTGCCCGAAGGGTTCGAAGATAGGGTGAAAGGGAGAGGTGTTGTTTACAGTGGCTGGGTGCAACAGCCGTTGATACTGAAGCACCCATCTGTAGGGTGCTTTGTGACTCATTGTGGTTCGGGGTCTCTAGCCGAGGCGATGATGAACCATTGCCGGTTGGTGCTTCTACCGCACGTCGGAGACCAGATCATTAATGCGAGAATGATGGGAGGCGATCTGAGAGTGGGAGTTGAAGTCGAGAAGGGAGACGAAGATGGCTTGTTTAGCAAGGAAGGTGTTTGCAAAGCTGTGGAGGTTGTGGTGGATGACGAGAGTGAGGTAGGGAAAGAAGTGAAGGCTAACCATGCTAAGTGGAGGGAGTTCTTCTCCAACAAAGGGCTTGAGAAAACGTACATTGATGGTTTTGAGCAGAGGCTGCATCAACTGATAGAATGTTAA

Protein Analysis

368

Amino Acids

41.22

Weight (kDa)

5.44

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 241 - 328 1.6e-11 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 159
AccB1I GGYRCC 2 cut(s) 159, 457
AccII CGCG 1 cut(s) 446
AciI CCGC 4 cut(s) 259, 342, 446, 839
AcoI YGGCCR 1 cut(s) 348
AcsI RAATTY 3 cut(s) 29, 52, 386
AcuI CTGAAG 2 cut(s) 584, 767
AfaI GTAC 2 cut(s) 161, 1061
AfiI CCNNNNNNNGG 3 cut(s) 761, 845, 1044
AflIII ACRYGT 1 cut(s) 377
AgsI TTSAA 4 cut(s) 329, 373, 634, 902
AjiI CACGTC 1 cut(s) 844
AjnI CCWGG 1 cut(s) 297
AluBI AGCT 7 cut(s) 103, 184, 272, 474, 604, 665, 956
AluI AGCT 7 cut(s) 103, 184, 272, 474, 604, 665, 956
Alw21I GWGCWC 1 cut(s) 606
Alw26I GTCTC 4 cut(s) 617, 798, 843, 909
AlwNI CAGNNNCTG 2 cut(s) 723, 1084
Ama87I CYCGRG 1 cut(s) 273
AoxI GGCC 3 cut(s) 348, 449, 462
ApeKI GCWGC 2 cut(s) 626, 1084
ApoI RAATTY 3 cut(s) 29, 52, 386
AseI ATTAAT 1 cut(s) 861
Asp718I GGTACC 1 cut(s) 159
AspS9I GGNCC 3 cut(s) 4, 449, 463
AsuC2I CCSGG 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 706
AsuII TTCGAA 2 cut(s) 390, 684
AvaI CYCGRG 1 cut(s) 273
AvaII GGWCC 1 cut(s) 4
AxyI CCTNAGG 1 cut(s) 642
BanI GGYRCC 2 cut(s) 159, 457
BanII GRGCYC 1 cut(s) 606
BbsI GAAGAC 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 606
BbvI GCAGC 2 cut(s) 638, 1071
BccI CCATC 6 cut(s) 257, 665, 763, 868, 917, 1061
BceAI ACGGC 2 cut(s) 124, 721
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BciT130I CCWGG 1 cut(s) 299
BcnI CCSGG 1 cut(s) 173
BcoDI GTCTC 4 cut(s) 617, 798, 843, 909
BfaI CTAG 2 cut(s) 413, 797
BfmI CTRYAG 1 cut(s) 759
BisI GCNGC 2 cut(s) 627, 1085
BlsI GCNGC 2 cut(s) 628, 1086
Bme1390I CCNGG 2 cut(s) 173, 299
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 273
BmgBI CACGTC 1 cut(s) 844
BmgT120I GGNCC 3 cut(s) 4, 449, 463
BmiI GGNNCC 5 cut(s) 161, 225, 450, 459, 465
BmrFI CCNGG 2 cut(s) 173, 299
BmsI GCATC 2 cut(s) 349, 1096
BpiI GAAGAC 1 cut(s) 52
BplI GAGNNNNNCTC 2 cut(s) 1019, 1051
Bpu14I TTCGAA 2 cut(s) 390, 684
BpuEI CTTGAG 1 cut(s) 1070
BpuMI CCSGG 1 cut(s) 173
BsaI GGTCTC 3 cut(s) 617, 798, 843
BsaJI CCNNGG 1 cut(s) 801
BsaXI ACNNNNNCTCC 2 cut(s) 888, 918
Bsc4I CCNNNNNNNGG 3 cut(s) 761, 845, 1044
Bse118I RCCGGY 3 cut(s) 451, 460, 822
Bse1I ACTGG 2 cut(s) 434, 591
Bse21I CCTNAGG 1 cut(s) 642
Bse3DI GCAATG 2 cut(s) 668, 817
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 801
BseGI GGATG 2 cut(s) 245, 979
BseLI CCNNNNNNNGG 3 cut(s) 761, 845, 1044
BseMI GCAATG 2 cut(s) 668, 817
BseMII CTCAG 2 cut(s) 633, 878
BseNI ACTGG 2 cut(s) 434, 591
BseXI GCAGC 2 cut(s) 638, 1071
BseYI CCCAGC 1 cut(s) 723
BsgI GTGCAG 1 cut(s) 440
Bsh1236I CGCG 1 cut(s) 446
BshFI GGCC 3 cut(s) 350, 451, 464
BshNI GGYRCC 2 cut(s) 159, 457
BsiHKAI GWGCWC 1 cut(s) 606
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 4 cut(s) 173, 452, 461, 823
BslI CCNNNNNNNGG 3 cut(s) 761, 845, 1044
BsmAI GTCTC 4 cut(s) 617, 798, 843, 909
BsmBI CGTCTC 1 cut(s) 909
BsmI GAATGC 1 cut(s) 560
BsnI GGCC 3 cut(s) 350, 451, 464
Bso31I GGTCTC 3 cut(s) 617, 798, 843
BsoBI CYCGRG 1 cut(s) 273
Bsp119I TTCGAA 2 cut(s) 390, 684
Bsp1286I GDGCHC 1 cut(s) 606
Bsp143I GATC 3 cut(s) 211, 855, 883
BspACI CCGC 4 cut(s) 259, 342, 446, 839
BspANI GGCC 3 cut(s) 350, 451, 464
BspCNI CTCAG 2 cut(s) 634, 879
BspFNI CGCG 1 cut(s) 446
BspLI GGNNCC 5 cut(s) 161, 225, 450, 459, 465
BspT104I TTCGAA 2 cut(s) 390, 684
BspT107I GGYRCC 2 cut(s) 159, 457
BspTNI GGTCTC 3 cut(s) 617, 798, 843
BsrDI GCAATG 2 cut(s) 668, 817
BsrFI RCCGGY 3 cut(s) 451, 460, 822
BsrI ACTGG 2 cut(s) 434, 591
BssAI RCCGGY 3 cut(s) 451, 460, 822
BssECI CCNNGG 1 cut(s) 801
BssMI GATC 3 cut(s) 211, 855, 883
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 4 cut(s) 93, 198, 576, 719
Bst6I CTCTTC 1 cut(s) 480
BstAPI GCANNNNNTGC 1 cut(s) 1084
BstBI TTCGAA 2 cut(s) 390, 684
BstC8I GCNNGC 2 cut(s) 462, 560
BstDEI CTNAG 4 cut(s) 167, 642, 887, 1017
BstF5I GGATG 2 cut(s) 245, 979
BstFNI CGCG 1 cut(s) 446
BstKTI GATC 3 cut(s) 214, 858, 886
BstMAI GTCTC 4 cut(s) 617, 798, 843, 909
BstMBI GATC 3 cut(s) 211, 855, 883
BstMWI GCNNNNNNNGC 6 cut(s) 141, 457, 838, 933, 1013, 1084
BstNI CCWGG 1 cut(s) 299
BstNSI RCATGY 1 cut(s) 381
BstSCI CCNGG 2 cut(s) 171, 297
BstSFI CTRYAG 1 cut(s) 759
BstUI CGCG 1 cut(s) 446
BstV1I GCAGC 2 cut(s) 638, 1071
BstV2I GAAGAC 1 cut(s) 52
Bsu36I CCTNAGG 1 cut(s) 642
BsuRI GGCC 3 cut(s) 350, 451, 464
BtgZI GCGATG 1 cut(s) 821
BtrI CACGTC 1 cut(s) 844
BtsCI GGATG 2 cut(s) 245, 979
BtsIMutI CAGTG 2 cut(s) 441, 724
Cac8I GCNNGC 2 cut(s) 462, 560
CaiI CAGNNNCTG 2 cut(s) 723, 1084
Cfr10I RCCGGY 3 cut(s) 451, 460, 822
Cfr13I GGNCC 3 cut(s) 4, 449, 463
Csp6I GTAC 2 cut(s) 160, 1060
CviAII CATG 4 cut(s) 115, 266, 378, 1013
CviQI GTAC 2 cut(s) 160, 1060
DdeI CTNAG 4 cut(s) 167, 642, 887, 1017
DpnI GATC 3 cut(s) 213, 857, 885
DpnII GATC 3 cut(s) 211, 855, 883
EaeI YGGCCR 1 cut(s) 348
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Ecl136II GAGCTC 1 cut(s) 604
Eco24I GRGCYC 1 cut(s) 606
Eco31I GGTCTC 3 cut(s) 617, 798, 843
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 604
Eco57I CTGAAG 2 cut(s) 584, 767
Eco81I CCTNAGG 1 cut(s) 642
Eco88I CYCGRG 1 cut(s) 273
EcoICRI GAGCTC 1 cut(s) 604
EcoRI GAATTC 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 606
Esp3I CGTCTC 1 cut(s) 909
FaeI CATG 4 cut(s) 118, 269, 381, 1016
FaiI YATR 5 cut(s) 116, 267, 288, 379, 1014
FatI CATG 4 cut(s) 114, 265, 377, 1012
FauI CCCGC 1 cut(s) 439
Fnu4HI GCNGC 2 cut(s) 627, 1085
FokI GGATG 2 cut(s) 232, 986
FriOI GRGCYC 1 cut(s) 606
Fsp4HI GCNGC 2 cut(s) 627, 1085
FspBI CTAG 2 cut(s) 413, 797
GluI GCNGC 2 cut(s) 627, 1085
GsaI CCCAGC 1 cut(s) 727
HaeIII GGCC 3 cut(s) 350, 451, 464
HapII CCGG 4 cut(s) 173, 452, 461, 823
Hin1II CATG 4 cut(s) 118, 269, 381, 1016
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 5 cut(s) 439, 597, 648, 653, 775
HpaII CCGG 4 cut(s) 173, 452, 461, 823
HphI GGTGA 1 cut(s) 706
Hpy166II GTNNAC 2 cut(s) 127, 715
Hpy188I TCNGA 5 cut(s) 38, 509, 548, 848, 888
Hpy188III TCNNGA 2 cut(s) 373, 907
Hpy8I GTNNAC 2 cut(s) 127, 715
Hpy99I CGWCG 1 cut(s) 848
HpyAV CCTTC 8 cut(s) 173, 249, 386, 562, 671, 904, 935, 997
HpyCH4III ACNGT 4 cut(s) 93, 198, 576, 719
HpyCH4IV ACGT 3 cut(s) 230, 843, 1058
HpyCH4V TGCA 6 cut(s) 135, 421, 580, 730, 951, 1087
HpyF10VI GCNNNNNNNGC 6 cut(s) 141, 457, 838, 933, 1013, 1084
HpyF3I CTNAG 4 cut(s) 167, 642, 887, 1017
HpySE526I ACGT 3 cut(s) 230, 843, 1058
Hsp92II CATG 4 cut(s) 118, 269, 381, 1016
KpnI GGTACC 1 cut(s) 163
KroI GCCGGC 1 cut(s) 460
KroNI GCCGGC 1 cut(s) 462
Kzo9I GATC 3 cut(s) 211, 855, 883
LmnI GCTCC 1 cut(s) 229
Lsp1109I GCAGC 2 cut(s) 638, 1071
LweI GCATC 2 cut(s) 349, 1096
MaeI CTAG 2 cut(s) 413, 797
MaeII ACGT 3 cut(s) 230, 843, 1058
MaeIII GTNAC 3 cut(s) 148, 289, 772
MalI GATC 3 cut(s) 213, 857, 885
MboI GATC 3 cut(s) 211, 855, 883
MhlI GDGCHC 1 cut(s) 606
MluCI AATT 4 cut(s) 21, 29, 52, 386
MlyI GAGTC 2 cut(s) 662, 769
MmeI TCCRAC 3 cut(s) 462, 826, 1062
MroNI GCCGGC 1 cut(s) 460
MseI TTAA 2 cut(s) 861, 1105
MspI CCGG 4 cut(s) 173, 452, 461, 823
MspR9I CCNGG 2 cut(s) 173, 299
Mva1269I GAATGC 1 cut(s) 560
MvaI CCWGG 1 cut(s) 299
MvnI CGCG 1 cut(s) 446
MwoI GCNNNNNNNGC 6 cut(s) 141, 457, 838, 933, 1013, 1084
NaeI GCCGGC 1 cut(s) 462
NciI CCSGG 1 cut(s) 173
NdeII GATC 3 cut(s) 211, 855, 883
NgoMIV GCCGGC 1 cut(s) 460
NlaIII CATG 4 cut(s) 118, 269, 381, 1016
NlaIV GGNNCC 5 cut(s) 161, 225, 450, 459, 465
NmeAIII GCCGAG 2 cut(s) 455, 826
NmuCI GTSAC 3 cut(s) 148, 289, 772
NspI RCATGY 1 cut(s) 381
NspV TTCGAA 2 cut(s) 390, 684
PaeR7I CTCGAG 1 cut(s) 273
PciI ACATGT 1 cut(s) 377
PcsI WCGNNNNNNNCGW 2 cut(s) 614, 657
PctI GAATGC 1 cut(s) 560
PdiI GCCGGC 1 cut(s) 462
PfeI GAWTC 3 cut(s) 439, 597, 648
PkrI GCNGC 2 cut(s) 628, 1086
PleI GAGTC 2 cut(s) 661, 769
PpsI GAGTC 2 cut(s) 661, 769
PscI ACATGT 1 cut(s) 377
PshBI ATTAAT 1 cut(s) 861
Psp124BI GAGCTC 1 cut(s) 606
Psp6I CCWGG 1 cut(s) 297
PspFI CCCAGC 1 cut(s) 723
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 5 cut(s) 161, 225, 450, 459, 465
PspPI GGNCC 3 cut(s) 4, 449, 463
PspXI VCTCGAGB 1 cut(s) 273
PstNI CAGNNNCTG 2 cut(s) 723, 1084
RsaI GTAC 2 cut(s) 161, 1061
RsaNI GTAC 2 cut(s) 160, 1060
SacI GAGCTC 1 cut(s) 606
SaqAI TTAA 2 cut(s) 861, 1105
SatI GCNGC 2 cut(s) 627, 1085
Sau3AI GATC 3 cut(s) 211, 855, 883
Sau96I GGNCC 3 cut(s) 4, 449, 463
SchI GAGTC 2 cut(s) 662, 769
ScrFI CCNGG 2 cut(s) 173, 299
SduI GDGCHC 1 cut(s) 606
SfaNI GCATC 2 cut(s) 349, 1096
SfcI CTRYAG 1 cut(s) 759
Sfr274I CTCGAG 1 cut(s) 273
SfuI TTCGAA 2 cut(s) 390, 684
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 273
SmlI CTYRAG 2 cut(s) 273, 1049
SmoI CTYRAG 2 cut(s) 273, 1049
Sse9I AATT 4 cut(s) 21, 29, 52, 386
SsiI CCGC 4 cut(s) 259, 342, 446, 839
SspMI CTAG 2 cut(s) 413, 797
SstI GAGCTC 1 cut(s) 606
StyD4I CCNGG 2 cut(s) 171, 297
TaaI ACNGT 4 cut(s) 93, 198, 576, 719
TaiI ACGT 3 cut(s) 233, 846, 1061
TaqI TCGA 7 cut(s) 274, 390, 600, 651, 660, 684, 906
TasI AATT 4 cut(s) 21, 29, 52, 386
TfiI GAWTC 3 cut(s) 439, 597, 648
Tru1I TTAA 2 cut(s) 861, 1105
Tru9I TTAA 2 cut(s) 861, 1105
TscAI CASTG 2 cut(s) 441, 724
TseFI GTSAC 3 cut(s) 148, 289, 772
TseI GCWGC 2 cut(s) 626, 1084
Tsp45I GTSAC 3 cut(s) 148, 289, 772
TspDTI ATGAA 6 cut(s) 131, 234, 282, 440, 657, 827
TspRI CASTG 2 cut(s) 441, 724
VpaK11BI GGWCC 1 cut(s) 4
VspI ATTAAT 1 cut(s) 861
XapI RAATTY 3 cut(s) 29, 52, 386
XceI RCATGY 1 cut(s) 381
XhoI CTCGAG 1 cut(s) 273
XspI CTAG 2 cut(s) 413, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.