Rmu_sc0025450.1_g000001

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025450.1
Physical Location & Seq
Forward (+)
1 .. 335
335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025450.1_g000001.1.cds

Sequence Viewer

Length: 208 bp
ggttgaaattgaaaaaggagatgaagatggcttgttcatcaaggaaggtgtttgcagagctgtgaaggcagtgatggatgaagacagtgaggtgggaaaggaggtgaggacaaaccatgctaagtggagggagttcttctcccataaagggcttgagagctcatacattgatgcttttgtgcaggagctgcatgaactgctagggtga

Protein Analysis

68

Amino Acids

7.75

Weight (kDa)

4.8

Isoelectric Point (pI)

33.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 2 cut(s) 6, 12
AluBI AGCT 3 cut(s) 60, 160, 188
AluI AGCT 3 cut(s) 60, 160, 188
Alw21I GWGCWC 1 cut(s) 162
AlwNI CAGNNNCTG 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 116
BanII GRGCYC 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 175
BccI CCATC 2 cut(s) 21, 68
BfaI CTAG 1 cut(s) 201
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
BmsI GCATC 1 cut(s) 161
BpiI GAAGAC 1 cut(s) 88
BplI GAGNNNNNCTC 2 cut(s) 123, 155
BpuEI CTTGAG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 1 cut(s) 148
BseGI GGATG 1 cut(s) 83
BseLI CCNNNNNNNGG 1 cut(s) 148
BseXI GCAGC 1 cut(s) 175
BsgI GTGCAG 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 87
BstAPI GCANNNNNTGC 2 cut(s) 188, 197
BstDEI CTNAG 1 cut(s) 121
BstF5I GGATG 1 cut(s) 83
BstMWI GCNNNNNNNGC 3 cut(s) 66, 188, 197
BstV1I GCAGC 1 cut(s) 175
BstV2I GAAGAC 1 cut(s) 88
BtsCI GGATG 1 cut(s) 83
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 2 cut(s) 76, 92
CaiI CAGNNNCTG 1 cut(s) 188
CviAII CATG 2 cut(s) 117, 192
CviJI RGCY 5 cut(s) 31, 60, 152, 160, 188
CviKI_1 RGCY 5 cut(s) 31, 60, 152, 160, 188
DdeI CTNAG 1 cut(s) 121
Ecl136II GAGCTC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 162
Eco53kI GAGCTC 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 162
FaeI CATG 2 cut(s) 120, 195
FaiI YATR 4 cut(s) 118, 145, 164, 193
FatI CATG 2 cut(s) 116, 191
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 1 cut(s) 90
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 1 cut(s) 201
GluI GCNGC 1 cut(s) 189
Hin1II CATG 2 cut(s) 120, 195
HphI GGTGA 1 cut(s) 116
HpyAV CCTTC 2 cut(s) 39, 59
HpyCH4III ACNGT 1 cut(s) 87
HpyCH4V TGCA 3 cut(s) 55, 182, 191
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 188, 197
HpyF3I CTNAG 1 cut(s) 121
Hsp92II CATG 2 cut(s) 120, 195
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 1 cut(s) 168
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 161
MaeI CTAG 1 cut(s) 201
MboII GAAGA 3 cut(s) 36, 93, 128
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 1 cut(s) 7
MnlI CCTC 4 cut(s) 83, 95, 100, 121
MwoI GCNNNNNNNGC 3 cut(s) 66, 188, 197
NlaIII CATG 2 cut(s) 120, 195
PkrI GCNGC 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 162
PstNI CAGNNNCTG 1 cut(s) 188
SacI GAGCTC 1 cut(s) 162
SatI GCNGC 1 cut(s) 189
SduI GDGCHC 1 cut(s) 162
SetI ASST 6 cut(s) 50, 62, 94, 106, 162, 190
SfaNI GCATC 1 cut(s) 161
SgeI CNNG 6 cut(s) 44, 53, 129, 165, 195, 204
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
Sse9I AATT 1 cut(s) 7
SspMI CTAG 1 cut(s) 201
SstI GAGCTC 1 cut(s) 162
TaaI ACNGT 1 cut(s) 87
TasI AATT 1 cut(s) 7
TscAI CASTG 2 cut(s) 76, 92
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 4 cut(s) 26, 37, 94, 208
TspRI CASTG 2 cut(s) 76, 92
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.