pycom10g23980

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000510
Physical Location & Seq
Reverse (-)
25908752 .. 25910172
1421 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g23980.1

Sequence Viewer

Length: 1236 bp
ATGAGTAATTACCAGCCATTGCCATCCCTTCACATTGCAATGTATCCATGGTTTGCCATGGGACACTTAACCCCCTACCTCCACCTCTCCAACAAGCTAGCCGAAAGAGGCCACAGAATCTCCTTCTTCGTACCAACCAAAACCCAGCAAAAATTACAAGCTTTAAACCTCCACCCTCATCTCATATCCTTCATCCCCATCACCGTCCCTCATGTCGACGGCCTTCTGCCGGGCGCCGAAACCACAAACGATGTCCCTTTCCCTTCCAACTCTCTCCTCATGGACGCCATGGACCTCACTCAGCCAGCAATCCTGCAATTAATTTGTGAACTAAACCCTAATTTTGTTTTCTTCGACTTCACGCCATGGTTGCCAAAATTGTTACGTCAGCTAGGTACAGGCATTAAATCTATATACTATATCATTATTAGTCCTGCAATTGTGGGTTATGTGAGAAGCCCAGAAAGAAAAGTACTAATGGAGAAATCGGTGTTGACGGAAGATGATCTTATCAACGAACTTATCAACCCGCCGCCATCTTTTCCACCATCTTCAATCAAGCTACCAGCACACGAAGCTCGAATGCTGGCGCCATTCCTGCTGAAGGAGTTCGGCAGTGGGACGAAATTAATCGAGCGCCTAAAAATCTCCTTGAAAGACTGTGACGCGTTGGCTTTCAGGACTTGTAGGGAGATGGAAGGGAAGTACTGCGATTATCTTGAAACCCAATTGAGAAAGCCGGTGCTTCTCGCAGGGCCAGTGGTGCCAGAGACTCCGACTACAGAGTTGGACGAGAAGTGGGCAAAATGGCTTGAAAGGGTAAAAGGAAGAGGGGTTGTGTGTTGGGGTTGGGTGCAGCAGCCATTGATGTTGAAGCACCCTTCTGTTGGGTGCTTCGTGACGCATTGCGGTCCATCGTCGTTGATGGAGGGGCTGGTGAGCGAGTTCCAGCTTGTTCTGCTGCCAAACGTGGCGGATCAGCTAGCCATTGCAAGAGTGATGGGTCGTGATCTGAGAGTTGGAGTGGAGGTTGAGAAAGGAGAGGAAGATGGGGTTTTTACGAAGGAGGGTGTTTGCAAGGCTGTGAGAGATGTGATGGATGAGGAGAGCGAGGTGGGGAAGGAAGTGAGGAGAAACCATGCAAAGTGGAGGGAGTTTCTTTCCAGTAAAGGGCTTGAGAACTCCTATATTGACAGTTTTGTGGAGAAGCTGCATGCGCTGCTTGGCTTAAATTAG

Protein Analysis

412

Amino Acids

46.32

Weight (kDa)

6.33

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 281 - 370 6.1e-09 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 233, 589, 763
AccI GTMKAC 1 cut(s) 216
AccII CGCG 1 cut(s) 668
AciI CCGC 4 cut(s) 530, 533, 909, 974
AclWI GGATC 1 cut(s) 984
AcuI CTGAAG 1 cut(s) 623
AcyI GRCGYC 3 cut(s) 234, 285, 590
AfaI GTAC 4 cut(s) 132, 397, 474, 707
AfiI CCNNNNNNNGG 4 cut(s) 229, 604, 887, 1170
AflIII ACRYGT 1 cut(s) 666
AgsI TTSAA 5 cut(s) 555, 655, 722, 815, 874
AluBI AGCT 8 cut(s) 97, 161, 391, 562, 578, 952, 982, 1210
AluI AGCT 8 cut(s) 97, 161, 391, 562, 578, 952, 982, 1210
Alw26I GTCTC 1 cut(s) 764
AlwI GGATC 1 cut(s) 984
AoxI GGCC 3 cut(s) 109, 220, 755
ApeKI GCWGC 5 cut(s) 856, 859, 961, 1210, 1219
AseI ATTAAT 2 cut(s) 320, 629
Asp700I GAANNNNTTC 1 cut(s) 608
AspLEI GCGC 4 cut(s) 236, 592, 639, 1219
AspS9I GGNCC 3 cut(s) 292, 755, 911
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 2 cut(s) 193, 949
AsuNHI GCTAGC 2 cut(s) 97, 982
AvaII GGWCC 2 cut(s) 292, 911
BanI GGYRCC 3 cut(s) 233, 589, 763
BbvI GCAGC 5 cut(s) 868, 871, 948, 1197, 1206
BceAI ACGGC 1 cut(s) 235
BciVI GTATCC 1 cut(s) 54
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 764
BfaI CTAG 3 cut(s) 98, 392, 983
BfmI CTRYAG 1 cut(s) 780
BfoI RGCGCY 3 cut(s) 237, 593, 640
BfuI GTATCC 1 cut(s) 54
BisI GCNGC 6 cut(s) 533, 857, 860, 962, 1211, 1220
BlsI GCNGC 6 cut(s) 534, 858, 861, 963, 1212, 1221
BmcAI AGTACT 2 cut(s) 474, 707
Bme1390I CCNGG 1 cut(s) 231
Bme18I GGWCC 2 cut(s) 292, 911
BmgT120I GGNCC 3 cut(s) 292, 755, 911
BmiI GGNNCC 3 cut(s) 235, 591, 765
BmrFI CCNGG 1 cut(s) 231
BmtI GCTAGC 2 cut(s) 101, 986
BpuEI CTTGAG 1 cut(s) 1196
BpuMI CCSGG 1 cut(s) 231
BsaHI GRCGYC 3 cut(s) 234, 285, 590
BsaJI CCNNGG 4 cut(s) 47, 57, 288, 365
BsaXI ACNNNNNCTCC 4 cut(s) 104, 134, 1014, 1044
Bsc4I CCNNNNNNNGG 4 cut(s) 229, 604, 887, 1170
Bse118I RCCGGY 1 cut(s) 739
Bse1I ACTGG 2 cut(s) 758, 1164
Bse3DI GCAATG 5 cut(s) 17, 33, 45, 904, 987
BseDI CCNNGG 4 cut(s) 47, 57, 288, 365
BseGI GGATG 3 cut(s) 23, 192, 1105
BseLI CCNNNNNNNGG 4 cut(s) 229, 604, 887, 1170
BseMI GCAATG 5 cut(s) 17, 33, 45, 904, 987
BseMII CTCAG 2 cut(s) 314, 1004
BseNI ACTGG 2 cut(s) 758, 1164
BseRI GAGGAG 3 cut(s) 266, 1118, 1144
BseXI GCAGC 5 cut(s) 868, 871, 948, 1197, 1206
BseYI CCCAGC 1 cut(s) 144
BsgI GTGCAG 1 cut(s) 875
Bsh1236I CGCG 1 cut(s) 668
BshFI GGCC 3 cut(s) 111, 222, 757
BshNI GGYRCC 3 cut(s) 233, 589, 763
BsiSI CCGG 2 cut(s) 230, 740
BslFI GGGAC 4 cut(s) 75, 191, 239, 634
BslI CCNNNNNNNGG 4 cut(s) 229, 604, 887, 1170
BsmAI GTCTC 1 cut(s) 764
BsmFI GGGAC 4 cut(s) 75, 191, 239, 634
BsmI GAATGC 1 cut(s) 588
BsnI GGCC 3 cut(s) 111, 222, 757
Bsp143I GATC 3 cut(s) 505, 976, 1009
Bsp19I CCATGG 4 cut(s) 47, 57, 288, 365
BspACI CCGC 4 cut(s) 530, 533, 909, 974
BspANI GGCC 3 cut(s) 111, 222, 757
BspCNI CTCAG 2 cut(s) 313, 1005
BspFNI CGCG 1 cut(s) 668
BspLI GGNNCC 3 cut(s) 235, 591, 765
BspOI GCTAGC 2 cut(s) 101, 986
BspPI GGATC 1 cut(s) 984
BspT107I GGYRCC 3 cut(s) 233, 589, 763
BsrDI GCAATG 5 cut(s) 17, 33, 45, 904, 987
BsrFI RCCGGY 1 cut(s) 739
BsrI ACTGG 2 cut(s) 758, 1164
BssAI RCCGGY 1 cut(s) 739
BssECI CCNNGG 4 cut(s) 47, 57, 288, 365
BssMI GATC 3 cut(s) 505, 976, 1009
BssNI GRCGYC 3 cut(s) 234, 285, 590
BssT1I CCWWGG 4 cut(s) 47, 57, 288, 365
Bst4CI ACNGT 3 cut(s) 205, 662, 1196
Bst6I CTCTTC 1 cut(s) 823
BstACI GRCGYC 3 cut(s) 234, 285, 590
BstAPI GCANNNNNTGC 1 cut(s) 1219
BstC8I GCNNGC 5 cut(s) 99, 306, 588, 984, 1215
BstDEI CTNAG 2 cut(s) 300, 1013
BstDSI CCRYGG 4 cut(s) 47, 57, 288, 365
BstENI CCTNNNNNAGG 1 cut(s) 602
BstF5I GGATG 3 cut(s) 23, 192, 1105
BstFNI CGCG 1 cut(s) 668
BstH2I RGCGCY 3 cut(s) 237, 593, 640
BstHHI GCGC 4 cut(s) 236, 592, 639, 1219
BstKTI GATC 3 cut(s) 508, 979, 1012
BstMAI GTCTC 1 cut(s) 764
BstMBI GATC 3 cut(s) 505, 976, 1009
BstMWI GCNNNNNNNGC 7 cut(s) 370, 575, 598, 763, 958, 1216, 1219
BstNSI RCATGY 1 cut(s) 1217
BstSCI CCNGG 1 cut(s) 229
BstSFI CTRYAG 1 cut(s) 780
BstUI CGCG 1 cut(s) 668
BstV1I GCAGC 5 cut(s) 868, 871, 948, 1197, 1206
BsuI GTATCC 1 cut(s) 54
BsuRI GGCC 3 cut(s) 111, 222, 757
BtgI CCRYGG 4 cut(s) 47, 57, 288, 365
BtsCI GGATG 3 cut(s) 23, 192, 1105
BtsI GCAGTG 1 cut(s) 622
BtsIMutI CAGTG 2 cut(s) 622, 765
Cac8I GCNNGC 5 cut(s) 99, 306, 588, 984, 1215
CfoI GCGC 4 cut(s) 236, 592, 639, 1219
Cfr10I RCCGGY 1 cut(s) 739
Cfr13I GGNCC 3 cut(s) 292, 755, 911
CseI GACGC 3 cut(s) 293, 674, 910
Csp6I GTAC 4 cut(s) 131, 396, 473, 706
CviAII CATG 8 cut(s) 48, 58, 212, 280, 289, 366, 1139, 1214
CviQI GTAC 4 cut(s) 131, 396, 473, 706
DdeI CTNAG 2 cut(s) 300, 1013
DinI GGCGCC 2 cut(s) 235, 591
DpnI GATC 3 cut(s) 507, 978, 1011
DpnII GATC 3 cut(s) 505, 976, 1009
DraI TTTAAA 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 823
EarI CTCTTC 1 cut(s) 823
EciI GGCGGA 1 cut(s) 989
Eco130I CCWWGG 4 cut(s) 47, 57, 288, 365
Eco47I GGWCC 2 cut(s) 292, 911
Eco57I CTGAAG 1 cut(s) 623
EcoNI CCTNNNNNAGG 1 cut(s) 602
EcoT14I CCWWGG 4 cut(s) 47, 57, 288, 365
EgeI GGCGCC 2 cut(s) 235, 591
EheI GGCGCC 2 cut(s) 235, 591
ErhI CCWWGG 4 cut(s) 47, 57, 288, 365
FaeI CATG 8 cut(s) 51, 61, 215, 283, 292, 369, 1142, 1217
FalI AAGNNNNNCTT 2 cut(s) 492, 524
FaqI GGGAC 4 cut(s) 75, 191, 239, 634
FatI CATG 8 cut(s) 47, 57, 211, 279, 288, 365, 1138, 1213
FauI CCCGC 1 cut(s) 537
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 6 cut(s) 533, 857, 860, 962, 1211, 1220
FokI GGATG 3 cut(s) 10, 179, 1112
Fsp4HI GCNGC 6 cut(s) 533, 857, 860, 962, 1211, 1220
FspBI CTAG 3 cut(s) 98, 392, 983
GlaI GCGC 4 cut(s) 235, 591, 638, 1218
GluI GCNGC 6 cut(s) 533, 857, 860, 962, 1211, 1220
GsaI CCCAGC 1 cut(s) 148
HaeII RGCGCY 3 cut(s) 237, 593, 640
HaeIII GGCC 3 cut(s) 111, 222, 757
HapII CCGG 2 cut(s) 230, 740
HgaI GACGC 3 cut(s) 293, 674, 910
HhaI GCGC 4 cut(s) 236, 592, 639, 1219
Hin1I GRCGYC 3 cut(s) 234, 285, 590
Hin1II CATG 8 cut(s) 51, 61, 215, 283, 292, 369, 1142, 1217
Hin6I GCGC 4 cut(s) 234, 590, 637, 1217
HinP1I GCGC 4 cut(s) 234, 590, 637, 1217
HincII GTYRAC 2 cut(s) 217, 495
HindII GTYRAC 2 cut(s) 217, 495
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 2 cut(s) 117, 772
HpaII CCGG 2 cut(s) 230, 740
HphI GGTGA 2 cut(s) 193, 949
Hpy166II GTNNAC 3 cut(s) 217, 329, 495
Hpy188I TCNGA 2 cut(s) 777, 1014
Hpy188III TCNNGA 4 cut(s) 679, 719, 898, 1007
Hpy8I GTNNAC 3 cut(s) 217, 329, 495
Hpy99I CGWCG 2 cut(s) 221, 922
HpyCH4III ACNGT 3 cut(s) 205, 662, 1196
HpyCH4IV ACGT 2 cut(s) 385, 969
HpyCH4V TGCA 8 cut(s) 38, 316, 437, 856, 992, 1077, 1142, 1213
HpyF10VI GCNNNNNNNGC 7 cut(s) 370, 575, 598, 763, 958, 1216, 1219
HpyF3I CTNAG 2 cut(s) 300, 1013
HpySE526I ACGT 2 cut(s) 385, 969
Hsp92I GRCGYC 3 cut(s) 234, 285, 590
Hsp92II CATG 8 cut(s) 51, 61, 215, 283, 292, 369, 1142, 1217
HspAI GCGC 4 cut(s) 234, 590, 637, 1217
KasI GGCGCC 2 cut(s) 233, 589
Kzo9I GATC 3 cut(s) 505, 976, 1009
Lsp1109I GCAGC 5 cut(s) 868, 871, 948, 1197, 1206
MaeI CTAG 3 cut(s) 98, 392, 983
MaeII ACGT 2 cut(s) 385, 969
MaeIII GTNAC 3 cut(s) 381, 662, 898
MalI GATC 3 cut(s) 507, 978, 1011
MboI GATC 3 cut(s) 505, 976, 1009
MboII GAAGA 6 cut(s) 118, 343, 512, 543, 840, 1058
MfeI CAATTG 2 cut(s) 438, 728
MluI ACGCGT 1 cut(s) 666
Mly113I GGCGCC 2 cut(s) 234, 590
MlyI GAGTC 1 cut(s) 766
MmeI TCCRAC 5 cut(s) 114, 291, 768, 800, 1000
MroXI GAANNNNTTC 1 cut(s) 608
MseI TTAA 6 cut(s) 68, 164, 320, 405, 629, 1229
MslI CAYNNNNRTG 1 cut(s) 38
MspI CCGG 2 cut(s) 230, 740
MspR9I CCNGG 1 cut(s) 231
MunI CAATTG 2 cut(s) 438, 728
Mva1269I GAATGC 1 cut(s) 588
MvnI CGCG 1 cut(s) 668
MwoI GCNNNNNNNGC 7 cut(s) 370, 575, 598, 763, 958, 1216, 1219
NarI GGCGCC 2 cut(s) 234, 590
NciI CCSGG 1 cut(s) 231
NcoI CCATGG 4 cut(s) 47, 57, 288, 365
NdeII GATC 3 cut(s) 505, 976, 1009
NheI GCTAGC 2 cut(s) 97, 982
NlaIII CATG 8 cut(s) 51, 61, 215, 283, 292, 369, 1142, 1217
NlaIV GGNNCC 3 cut(s) 235, 591, 765
NmuCI GTSAC 2 cut(s) 662, 898
NspI RCATGY 1 cut(s) 1217
PaeI GCATGC 1 cut(s) 1217
PctI GAATGC 1 cut(s) 588
PdmI GAANNNNTTC 1 cut(s) 608
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 6 cut(s) 534, 858, 861, 963, 1212, 1221
PleI GAGTC 1 cut(s) 766
PluTI GGCGCC 2 cut(s) 237, 593
PpsI GAGTC 1 cut(s) 766
PshBI ATTAAT 2 cut(s) 320, 629
PspFI CCCAGC 1 cut(s) 144
PspN4I GGNNCC 3 cut(s) 235, 591, 765
PspPI GGNCC 3 cut(s) 292, 755, 911
RsaI GTAC 4 cut(s) 132, 397, 474, 707
RsaNI GTAC 4 cut(s) 131, 396, 473, 706
RseI CAYNNNNRTG 1 cut(s) 38
SalI GTCGAC 1 cut(s) 215
SaqAI TTAA 6 cut(s) 68, 164, 320, 405, 629, 1229
SatI GCNGC 6 cut(s) 533, 857, 860, 962, 1211, 1220
Sau3AI GATC 3 cut(s) 505, 976, 1009
Sau96I GGNCC 3 cut(s) 292, 755, 911
ScaI AGTACT 2 cut(s) 474, 707
SchI GAGTC 1 cut(s) 766
ScrFI CCNGG 1 cut(s) 231
SfcI CTRYAG 1 cut(s) 780
SfoI GGCGCC 2 cut(s) 235, 591
SinI GGWCC 2 cut(s) 292, 911
SmiMI CAYNNNNRTG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 1175
SmoI CTYRAG 1 cut(s) 1175
SphI GCATGC 1 cut(s) 1217
SsiI CCGC 4 cut(s) 530, 533, 909, 974
SspDI GGCGCC 2 cut(s) 233, 589
SspMI CTAG 3 cut(s) 98, 392, 983
StyD4I CCNGG 1 cut(s) 229
StyI CCWWGG 4 cut(s) 47, 57, 288, 365
TaaI ACNGT 3 cut(s) 205, 662, 1196
TaiI ACGT 2 cut(s) 388, 972
TaqI TCGA 4 cut(s) 216, 354, 580, 633
TatI WGTACW 2 cut(s) 472, 705
TauI GCSGC 1 cut(s) 535
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 6 cut(s) 68, 164, 320, 405, 629, 1229
Tru9I TTAA 6 cut(s) 68, 164, 320, 405, 629, 1229
TscAI CASTG 2 cut(s) 622, 765
TseFI GTSAC 2 cut(s) 662, 898
TseI GCWGC 5 cut(s) 856, 859, 961, 1210, 1219
Tsp45I GTSAC 2 cut(s) 662, 898
TspDTI ATGAA 1 cut(s) 181
TspGWI ACGGA 1 cut(s) 512
TspRI CASTG 2 cut(s) 622, 765
VpaK11BI GGWCC 2 cut(s) 292, 911
VspI ATTAAT 2 cut(s) 320, 629
XagI CCTNNNNNAGG 1 cut(s) 602
XceI RCATGY 1 cut(s) 1217
XmiI GTMKAC 1 cut(s) 216
XmnI GAANNNNTTC 1 cut(s) 608
XspI CTAG 3 cut(s) 98, 392, 983
ZrmI AGTACT 2 cut(s) 474, 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.