Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000510

Physical Location & Seq

Genomic Coordinates Forward (+)

43922308 .. 43923327

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1307800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGATTTACTGCGCATTTGGAAGCCAATGCATTCTGAAAATTGATCAGTTTCAAGAATTGTTGTTGGGTTTTGAGCTCACAGGTTTGCCCTTCTTCGCGGCGCTGAAGCCGCCTATGAGAGCTGAATCGATCGAGTCAGCATTGCCGGAAGGGTTTGAGGAGAGGACACGAGGAAGAGGGGTTGTTTACGGTCCATTGTTCTTGAGGCACCCTTCTGTGGGGTGCTTTGTGACTCATTGCGGCTCAGGGTCTTTGTCCGAGGCGCTAATCATCAATGCGCGAATGATGGGCCGCGATCTGAAGGTGGGAGTCGAAGTGGAGAAAGGAGACTTAGACGGCCTGTTCACGAAGGATGGTGTTGCCAAGGCAGTGGAAGCTGTGATTGAGGATGGCGGTGAGGTAGCTGAGGAGGTGAGGAGCAACCATGCAAAATGGAGGGAATTTTTCTCCGGCAAAGGGCTTGGTAGCTCTTATTTGGATAGTTTTGAACAAAAGCTGCATCAACTGCTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0033838 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00942 map00942

Pfam Domains

Protein Families

UDPGT

Protein Analysis

172

Amino Acids

18.77

Weight (kDa)

5.18

Isoelectric Point (pI)

30.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000510)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica	MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica	Prupe.4G054800_v2.0.a1
pyrus_communis	pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis	RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata	RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora	Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa	Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha	Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana	Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	13
AccB1I	GGYRCC	1 cut(s)	207
AccII	CGCG	3 cut(s)	98, 280, 294
AciI	CCGC	5 cut(s)	98, 110, 240, 292, 393
AcsI	RAATTY	1 cut(s)	440
AcuI	CTGAAG	2 cut(s)	125, 320
AfiI	CCNNNNNNNGG	3 cut(s)	217, 218, 456
AgsI	TTSAA	3 cut(s)	53, 488, 512
AluBI	AGCT	6 cut(s)	76, 122, 377, 404, 468, 496
AluI	AGCT	6 cut(s)	76, 122, 377, 404, 468, 496
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	321
AoxI	GGCC	2 cut(s)	289, 337
ApeKI	GCWGC	1 cut(s)	496
ApoI	RAATTY	1 cut(s)	440
AspLEI	GCGC	4 cut(s)	14, 103, 265, 280
AspS9I	GGNCC	2 cut(s)	191, 289
AsuHPI	GGTGA	2 cut(s)	407, 424
AvaII	GGWCC	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	78
BauI	CACGAG	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	78
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	483
BccI	CCATC	3 cut(s)	280, 347, 383
BceAI	ACGGC	1 cut(s)	352
BclI	TGATCA	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	321
BfoI	RGCGCY	2 cut(s)	104, 266
BisI	GCNGC	5 cut(s)	99, 110, 241, 292, 497
BlsI	GCNGC	5 cut(s)	100, 111, 242, 293, 498
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	191, 289
BmiI	GGNNCC	1 cut(s)	209
BmsI	GCATC	1 cut(s)	508
Bpu10I	CCTNAGC	2 cut(s)	244, 405
BpuEI	CTTGAG	1 cut(s)	223
Bsa29I	ATCGAT	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	258, 363
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 218, 456
Bse3DI	GCAATG	2 cut(s)	140, 235
BseCI	ATCGAT	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	258, 363
BseGI	GGATG	2 cut(s)	358, 394
BseLI	CCNNNNNNNGG	3 cut(s)	217, 218, 456
BseMI	GCAATG	2 cut(s)	140, 235
BseMII	CTCAG	2 cut(s)	258, 396
BseRI	GAGGAG	3 cut(s)	173, 422, 430
BseXI	GCAGC	1 cut(s)	483
Bsh1236I	CGCG	3 cut(s)	98, 280, 294
Bsh1285I	CGRYCG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	291, 339
BshNI	GGYRCC	1 cut(s)	207
BshVI	ATCGAT	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	146, 450
BslI	CCNNNNNNNGG	3 cut(s)	217, 218, 456
BsmAI	GTCTC	1 cut(s)	321
BsmI	GAATGC	1 cut(s)	30
BsnI	GGCC	2 cut(s)	291, 339
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	3 cut(s)	43, 129, 295
BspACI	CCGC	5 cut(s)	98, 110, 240, 292, 393
BspANI	GGCC	2 cut(s)	291, 339
BspCNI	CTCAG	2 cut(s)	257, 397
BspDI	ATCGAT	1 cut(s)	128
BspFNI	CGCG	3 cut(s)	98, 280, 294
BspLI	GGNNCC	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	207
BsrDI	GCAATG	2 cut(s)	140, 235
BssECI	CCNNGG	2 cut(s)	258, 363
BssMI	GATC	3 cut(s)	43, 129, 295
BssSI	CACGAG	1 cut(s)	168
BssT1I	CCWWGG	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	169
BstAPI	GCANNNNNTGC	1 cut(s)	505
BstDEI	CTNAG	3 cut(s)	244, 331, 405
BstF5I	GGATG	2 cut(s)	358, 394
BstFNI	CGCG	3 cut(s)	98, 280, 294
BstH2I	RGCGCY	2 cut(s)	104, 266
BstHHI	GCGC	4 cut(s)	14, 103, 265, 280
BstKTI	GATC	3 cut(s)	46, 132, 298
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	3 cut(s)	43, 129, 295
BstMCI	CGRYCG	1 cut(s)	132
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 374, 505
BstUI	CGCG	3 cut(s)	98, 280, 294
BstV1I	GCAGC	1 cut(s)	483
BstXI	CCANNNNNNTGG	1 cut(s)	370
Bsu15I	ATCGAT	1 cut(s)	128
BsuRI	GGCC	2 cut(s)	291, 339
BsuTUI	ATCGAT	1 cut(s)	128
BtsCI	GGATG	2 cut(s)	358, 394
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	1 cut(s)	375
CfoI	GCGC	4 cut(s)	14, 103, 265, 280
Cfr13I	GGNCC	2 cut(s)	191, 289
ClaI	ATCGAT	1 cut(s)	128
CviAII	CATG	1 cut(s)	425
DdeI	CTNAG	3 cut(s)	244, 331, 405
DpnI	GATC	3 cut(s)	45, 131, 297
DpnII	GATC	3 cut(s)	43, 129, 295
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	76
Eco57I	CTGAAG	2 cut(s)	125, 320
EcoICRI	GAGCTC	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	363
EcoT22I	ATGCAT	1 cut(s)	32
EcoT38I	GRGCYC	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	1 cut(s)	428
FaiI	YATR	2 cut(s)	116, 426
FatI	CATG	1 cut(s)	424
FbaI	TGATCA	1 cut(s)	43
Fnu4HI	GCNGC	5 cut(s)	99, 110, 241, 292, 497
FokI	GGATG	2 cut(s)	365, 401
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	5 cut(s)	99, 110, 241, 292, 497
FspI	TGCGCA	1 cut(s)	13
GlaI	GCGC	4 cut(s)	13, 102, 264, 279
GluI	GCNGC	5 cut(s)	99, 110, 241, 292, 497
HaeII	RGCGCY	2 cut(s)	104, 266
HaeIII	GGCC	2 cut(s)	291, 339
HapII	CCGG	2 cut(s)	146, 450
HhaI	GCGC	4 cut(s)	14, 103, 265, 280
Hin1II	CATG	1 cut(s)	428
Hin6I	GCGC	4 cut(s)	12, 101, 263, 278
HinP1I	GCGC	4 cut(s)	12, 101, 263, 278
HinfI	GANTC	4 cut(s)	125, 134, 232, 309
HpaII	CCGG	2 cut(s)	146, 450
HphI	GGTGA	2 cut(s)	407, 424
Hpy166II	GTNNAC	2 cut(s)	187, 345
Hpy188I	TCNGA	3 cut(s)	36, 259, 300
Hpy188III	TCNNGA	3 cut(s)	53, 202, 346
Hpy8I	GTNNAC	2 cut(s)	187, 345
HpyAV	CCTTC	5 cut(s)	100, 143, 222, 295, 343
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4V	TGCA	3 cut(s)	30, 428, 499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 374, 505
HpyF3I	CTNAG	3 cut(s)	244, 331, 405
Hsp92II	CATG	1 cut(s)	428
HspAI	GCGC	4 cut(s)	12, 101, 263, 278
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	3 cut(s)	43, 129, 295
LmnI	GCTCC	1 cut(s)	417
LpnPI	CCDG	5 cut(s)	66, 159, 231, 353, 463
Lsp1109I	GCAGC	1 cut(s)	483
LweI	GCATC	1 cut(s)	508
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	3 cut(s)	45, 131, 297
MboI	GATC	3 cut(s)	43, 129, 295
MboII	GAAGA	2 cut(s)	85, 186
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	3 cut(s)	39, 56, 440
MlyI	GAGTC	3 cut(s)	143, 226, 318
Mph1103I	ATGCAT	1 cut(s)	32
MspI	CCGG	2 cut(s)	146, 450
Mva1269I	GAATGC	1 cut(s)	30
MvnI	CGCG	3 cut(s)	98, 280, 294
MwoI	GCNNNNNNNGC	3 cut(s)	109, 374, 505
NdeII	GATC	3 cut(s)	43, 129, 295
NlaIII	CATG	1 cut(s)	428
NlaIV	GGNNCC	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	229
NsbI	TGCGCA	1 cut(s)	13
NsiI	ATGCAT	1 cut(s)	32
PctI	GAATGC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	5 cut(s)	100, 111, 242, 293, 498
Ple19I	CGATCG	1 cut(s)	132
PleI	GAGTC	3 cut(s)	142, 226, 317
PpsI	GAGTC	3 cut(s)	142, 226, 317
Psp124BI	GAGCTC	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	2 cut(s)	191, 289
PvuI	CGATCG	1 cut(s)	132
SacI	GAGCTC	1 cut(s)	78
SatI	GCNGC	5 cut(s)	99, 110, 241, 292, 497
Sau3AI	GATC	3 cut(s)	43, 129, 295
Sau96I	GGNCC	2 cut(s)	191, 289
SchI	GAGTC	3 cut(s)	143, 226, 318
SduI	GDGCHC	1 cut(s)	78
SfaNI	GCATC	1 cut(s)	508
SinI	GGWCC	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
Sse9I	AATT	3 cut(s)	39, 56, 440
SsiI	CCGC	5 cut(s)	98, 110, 240, 292, 393
SstI	GAGCTC	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	191
TaqI	TCGA	3 cut(s)	128, 132, 312
TasI	AATT	3 cut(s)	39, 56, 440
TauI	GCSGC	4 cut(s)	101, 112, 243, 294
TfiI	GAWTC	1 cut(s)	125
TscAI	CASTG	1 cut(s)	375
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	496
Tsp45I	GTSAC	1 cut(s)	229
TspRI	CASTG	1 cut(s)	375
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	1 cut(s)	440
Zsp2I	ATGCAT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.