Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036650.1

Orthogroup ID

OG0000510

Physical Location & Seq

Genomic Coordinates Reverse (-)

15 .. 485

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036650.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ctgaaaccgccaaccggagttgaatcaattgaatcggcagtgccagaaggctttgaagcgcgtgttaaagaaaaaggggttgtttatgggggttgggttcagcagcctttaatactgaagcacccatctataggttgctttgtgactcactgcggtccagggtctttaaacgaggcgttgctgaatgagtgccaattggtgtttttgccaaatattattgatcaggtaatcaacgcgagaatgatgagcggtgatttgaaagttggagttgaagttgagaaaggggatgaagatggattgttcaccaaggaaggtgtttgcaaagctgtgagagctgtgatggatgaggacagtcaggttggaaaggaggttagcaccaaccatgccaagtggagagagttcatctccggtaaagggcttgagagctcatatattgatggttttgtgcagaagttgcatgacctcctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00942 map00942

Pfam Domains

Protein Families

UDPGT

Protein Analysis

156

Amino Acids

17.01

Weight (kDa)

5.09

Isoelectric Point (pI)

29.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000510)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica	MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica	Prupe.4G054800_v2.0.a1
pyrus_communis	pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis	RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata	RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora	Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa	Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha	Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana	Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	249
AccII	CGCG	2 cut(s)	61, 236
AciI	CCGC	3 cut(s)	8, 153, 249
AcuI	CTGAAG	1 cut(s)	137
AfiI	CCNNNNNNNGG	3 cut(s)	14, 131, 414
AgsI	TTSAA	5 cut(s)	23, 32, 56, 259, 272
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	3 cut(s)	326, 335, 426
AluI	AGCT	3 cut(s)	326, 335, 426
Alw21I	GWGCWC	1 cut(s)	428
ApeKI	GCWGC	1 cut(s)	103
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	263, 295
AvaII	GGWCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	428
Bbv12I	GWGCWC	1 cut(s)	428
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	4 cut(s)	133, 287, 334, 431
BciT130I	CCWGG	1 cut(s)	159
BclI	TGATCA	1 cut(s)	220
BfmI	CTRYAG	1 cut(s)	129
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	155
BmrFI	CCNGG	1 cut(s)	159
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
BpuEI	CTTGAG	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	158, 306
BsaWI	WCCGGW	2 cut(s)	14, 407
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 131, 414
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	158, 306
BseGI	GGATG	2 cut(s)	292, 349
BseLI	CCNNNNNNNGG	3 cut(s)	14, 131, 414
BseXI	GCAGC	1 cut(s)	115
BsgI	GTGCAG	1 cut(s)	467
Bsh1236I	CGCG	2 cut(s)	61, 236
BsiHKAI	GWGCWC	1 cut(s)	428
BsiSI	CCGG	2 cut(s)	15, 408
BslI	CCNNNNNNNGG	3 cut(s)	14, 131, 414
Bsp1286I	GDGCHC	1 cut(s)	428
Bsp143I	GATC	1 cut(s)	220
BspACI	CCGC	3 cut(s)	8, 153, 249
BspFNI	CGCG	2 cut(s)	61, 236
BsrBI	CCGCTC	1 cut(s)	249
BssECI	CCNNGG	2 cut(s)	158, 306
BssMI	GATC	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	454
BstF5I	GGATG	2 cut(s)	292, 349
BstFNI	CGCG	2 cut(s)	61, 236
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 454
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	129
BstUI	CGCG	2 cut(s)	61, 236
BstV1I	GCAGC	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	292, 349
BtsI	GCAGTG	2 cut(s)	45, 148
BtsIMutI	CAGTG	2 cut(s)	45, 148
CfoI	GCGC	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	155
CviAII	CATG	2 cut(s)	383, 458
CviJI	RGCY	6 cut(s)	51, 106, 326, 335, 418, 426
CviKI_1	RGCY	6 cut(s)	51, 106, 326, 335, 418, 426
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
DraI	TTTAAA	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	426
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	428
Eco47I	GGWCC	1 cut(s)	155
Eco53kI	GAGCTC	1 cut(s)	426
Eco57I	CTGAAG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	428
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	2 cut(s)	386, 461
FaiI	YATR	7 cut(s)	87, 131, 384, 430, 432, 459, 469
FatI	CATG	2 cut(s)	382, 457
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	104
FokI	GGATG	2 cut(s)	299, 356
FriOI	GRGCYC	1 cut(s)	428
Fsp4HI	GCNGC	1 cut(s)	104
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	1 cut(s)	104
HapII	CCGG	2 cut(s)	15, 408
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	2 cut(s)	386, 461
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HinfI	GANTC	3 cut(s)	23, 32, 145
HpaII	CCGG	2 cut(s)	15, 408
HphI	GGTGA	2 cut(s)	263, 295
Hpy166II	GTNNAC	1 cut(s)	303
Hpy8I	GTNNAC	1 cut(s)	303
HpyAV	CCTTC	2 cut(s)	41, 305
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4V	TGCA	3 cut(s)	321, 448, 457
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 454
Hsp92II	CATG	2 cut(s)	386, 461
HspAI	GCGC	1 cut(s)	59
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	220
LpnPI	CCDG	7 cut(s)	28, 57, 144, 171, 209, 341, 421
Lsp1109I	GCAGC	1 cut(s)	115
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	1 cut(s)	222
MbiI	CCGCTC	1 cut(s)	249
MboI	GATC	1 cut(s)	220
MboII	GAAGA	1 cut(s)	302
MfeI	CAATTG	2 cut(s)	27, 194
MhlI	GDGCHC	1 cut(s)	428
MluCI	AATT	2 cut(s)	27, 194
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	2 cut(s)	244, 340
MnlI	CCTC	3 cut(s)	166, 340, 361
MseI	TTAA	3 cut(s)	66, 110, 167
MspI	CCGG	2 cut(s)	15, 408
MspR9I	CCNGG	1 cut(s)	159
MunI	CAATTG	2 cut(s)	27, 194
MvaI	CCWGG	1 cut(s)	159
MvnI	CGCG	2 cut(s)	61, 236
MwoI	GCNNNNNNNGC	2 cut(s)	332, 454
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	2 cut(s)	386, 461
NmuCI	GTSAC	1 cut(s)	142
PfeI	GAWTC	2 cut(s)	23, 32
PkrI	GCNGC	1 cut(s)	105
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
Psp124BI	GAGCTC	1 cut(s)	428
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	155
SacI	GAGCTC	1 cut(s)	428
SaqAI	TTAA	3 cut(s)	66, 110, 167
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	428
SetI	ASST	9 cut(s)	136, 228, 316, 328, 337, 360, 372, 428, 465
SfcI	CTRYAG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	2 cut(s)	27, 194
SsiI	CCGC	3 cut(s)	8, 153, 249
SspI	AATATT	1 cut(s)	214
SstI	GAGCTC	1 cut(s)	428
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	353
TasI	AATT	2 cut(s)	27, 194
TfiI	GAWTC	2 cut(s)	23, 32
Tru1I	TTAA	3 cut(s)	66, 110, 167
Tru9I	TTAA	3 cut(s)	66, 110, 167
TscAI	CASTG	2 cut(s)	45, 155
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	303, 391
TspRI	CASTG	2 cut(s)	45, 155
VpaK11BI	GGWCC	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.