Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000510

Physical Location & Seq

Genomic Coordinates Forward (+)

6475831 .. 6477341

Gene Structure 1511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG076100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGTGCAATTCAATCTCCATCCAGATCTCATTTCGTTCATCCCCATCAATGTTCCTCATGTTGATGGACTCCCTCCCGGCACCGAAACCACAGCCGATATTACTTTCCATTTGCACCCCCATCTTGTCACCGCCATGGACCTAACTCGACCCCAAATTGAACAATCCCTTTGCGAACTCAACCCTAATTTCGTGTTCTTCGATTTCAGTTACTGGTTGCCTGAATTCCTGCGTCAACTAGGTAAGAACATTAAGTCTGTGCATTACTGCACAATTAGTCCTGCAACTGTGGGATACCTGATAAGCCCTGAGAGAAAATTGACGGAGAAAATGCTAACCGAATTTGAATACAGGGAGGCTCCAACTTCATTTCCTTCGTCTTCGATCAAGCTACGAGCCCACGAAGCTCGAGGGCTAGTATATGGTGCAAACCAGGAATATGGCCGTGGGATTACATTTCTCAAACGCCAGCAGATCAATTTTGGTGATTGTGATGCCATTGCATTTAAAACTTGTAGAGAATTGGAGGGTCCATTTTGTAATTATCTTGAAACCCAACTGAGGAAGCCGGTGATTCTTGCTGGTCCAGTGGTGCCAGAGCCTCCAAGTTCGCAGTTGGAAGAGAAATGGGCAAAATGGCTTGGAGGGTTCGAACCAGGAGCCCTGATTTTCTGTGCTTTTGGAAGTGAATGCATTTTGAAAAAAGAACAATTGCAAGAACTGTTGTTGGGTTTTGAGCTTACTGGTTTGCCTTTCTTCGCTGCACTGAAGCCACCAACCGGAGTTGAATCAATTGAATCAGCATTGCCACAAGGGTTTTTGGAGCGGGTTAAAGGAAAAGGGGTTGTTTATGGGGGTTGGGTTCAGCAGCCTTTGATACTTAAACACCCGTCTGTGGGTTGCTTTGTGACTCATTGTGGCTCGGGGTCTTTATCCGAGGCGCTAGTGAATGAGTGTCAATTGGTCCTTCTGCCAAATGTGGGAGATCAGTTCATCAATGCGAGAATGATGAGTGGCGATCTGAAAGTGGGTGTTGAGGTTGAGAAAGGGGATGAAGATGGCTTGTTTAGCAAGGCCGGGGTTTGCAAAGCTGTGAAAGCTGTGATTGATGAGGACAGTGAGATTGGGAAGGAGGTGAGGGCCAACCATGCTAAGTGGAGGGAGTTCTTCTCCAGCAAAGGGCTTGAGAACTCATACATTGATGATTTTGTACACAGGCTCCATAAACTGCTAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00942 map00942

Pfam Domains

Protein Families

UDPGT

Protein Analysis

412

Amino Acids

45.87

Weight (kDa)

5.7

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	286 - 373	1.3e-11	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000510)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica	MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica	Prupe.4G054800_v2.0.a1
pyrus_communis	pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis	RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata	RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora	Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa	Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha	Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana	Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	80, 592
AccBSI	CCGCTC	1 cut(s)	826
AciI	CCGC	2 cut(s)	132, 826
AcoI	YGGCCR	1 cut(s)	442
AcsI	RAATTY	2 cut(s)	224, 341
AcuI	CTGAAG	1 cut(s)	788
AfaI	GTAC	1 cut(s)	1212
AfiI	CCNNNNNNNGG	6 cut(s)	561, 779, 895, 896, 980, 1179
AgsI	TTSAA	7 cut(s)	13, 161, 347, 551, 700, 788, 797
AjnI	CCWGG	2 cut(s)	432, 655
AluBI	AGCT	5 cut(s)	391, 407, 739, 1091, 1100
AluI	AGCT	5 cut(s)	391, 407, 739, 1091, 1100
AlwNI	CAGNNNCTG	1 cut(s)	213
Ama87I	CYCGRG	2 cut(s)	408, 922
AoxI	GGCC	3 cut(s)	442, 1074, 1140
ApeKI	GCWGC	2 cut(s)	761, 868
ApoI	RAATTY	2 cut(s)	224, 341
AspLEI	GCGC	1 cut(s)	943
AspS9I	GGNCC	5 cut(s)	139, 530, 584, 964, 1140
AsuC2I	CCSGG	2 cut(s)	78, 1078
AsuHPI	GGTGA	4 cut(s)	121, 497, 583, 1147
AsuII	TTCGAA	1 cut(s)	651
AvaI	CYCGRG	2 cut(s)	408, 922
AvaII	GGWCC	4 cut(s)	139, 530, 584, 964
BanI	GGYRCC	2 cut(s)	80, 592
BanII	GRGCYC	2 cut(s)	400, 664
BbsI	GAAGAC	1 cut(s)	372
BbvI	GCAGC	2 cut(s)	748, 880
BccI	CCATC	5 cut(s)	27, 53, 59, 129, 1052
BceAI	ACGGC	1 cut(s)	429
BciT130I	CCWGG	2 cut(s)	434, 657
BciVI	GTATCC	1 cut(s)	287
BcnI	CCSGG	2 cut(s)	78, 1078
BfaI	CTAG	4 cut(s)	239, 416, 944, 1232
BfoI	RGCGCY	1 cut(s)	944
BfuI	GTATCC	1 cut(s)	287
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	2 cut(s)	762, 869
BlsI	GCNGC	2 cut(s)	763, 870
Bme1390I	CCNGG	4 cut(s)	78, 434, 657, 1078
Bme18I	GGWCC	4 cut(s)	139, 530, 584, 964
BmeT110I	CYCGRG	2 cut(s)	408, 922
BmgT120I	GGNCC	5 cut(s)	139, 530, 584, 964, 1140
BmiI	GGNNCC	6 cut(s)	82, 360, 531, 594, 661, 1220
BmrFI	CCNGG	4 cut(s)	78, 434, 657, 1078
BmsI	GCATC	1 cut(s)	484
BpiI	GAAGAC	1 cut(s)	372
BplI	GAGNNNNNCTC	2 cut(s)	1154, 1186
BpmI	CTGGAG	1 cut(s)	1156
Bpu14I	TTCGAA	1 cut(s)	651
BpuEI	CTTGAG	1 cut(s)	1205
BpuMI	CCSGG	2 cut(s)	78, 1078
BsaJI	CCNNGG	4 cut(s)	135, 445, 936, 1077
BsaWI	WCCGGW	1 cut(s)	779
BsaXI	ACNNNNNCTCC	2 cut(s)	1203, 1233
Bsc4I	CCNNNNNNNGG	6 cut(s)	561, 779, 895, 896, 980, 1179
Bse118I	RCCGGY	1 cut(s)	568
Bse1I	ACTGG	3 cut(s)	218, 587, 748
Bse3DI	GCAATG	2 cut(s)	498, 803
BseBI	CCWGG	2 cut(s)	434, 657
BseDI	CCNNGG	4 cut(s)	135, 445, 936, 1077
BseGI	GGATG	3 cut(s)	19, 39, 1057
BseLI	CCNNNNNNNGG	6 cut(s)	561, 779, 895, 896, 980, 1179
BseMI	GCAATG	2 cut(s)	498, 803
BseMII	CTCAG	2 cut(s)	300, 551
BseNI	ACTGG	3 cut(s)	218, 587, 748
BseXI	GCAGC	2 cut(s)	748, 880
BsgI	GTGCAG	2 cut(s)	253, 747
BshFI	GGCC	3 cut(s)	444, 1076, 1142
BshNI	GGYRCC	2 cut(s)	80, 592
BsiHKCI	CYCGRG	2 cut(s)	408, 922
BsiSI	CCGG	4 cut(s)	78, 569, 780, 1077
BslI	CCNNNNNNNGG	6 cut(s)	561, 779, 895, 896, 980, 1179
BsmI	GAATGC	1 cut(s)	695
BsnI	GGCC	3 cut(s)	444, 1076, 1142
BsoBI	CYCGRG	2 cut(s)	408, 922
Bsp119I	TTCGAA	1 cut(s)	651
Bsp1286I	GDGCHC	2 cut(s)	400, 664
Bsp1407I	TGTACA	1 cut(s)	1210
Bsp143I	GATC	5 cut(s)	25, 384, 474, 985, 1018
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	2 cut(s)	132, 826
BspANI	GGCC	3 cut(s)	444, 1076, 1142
BspCNI	CTCAG	2 cut(s)	301, 552
BspLI	GGNNCC	6 cut(s)	82, 360, 531, 594, 661, 1220
BspT104I	TTCGAA	1 cut(s)	651
BspT107I	GGYRCC	2 cut(s)	80, 592
BsrBI	CCGCTC	1 cut(s)	826
BsrDI	GCAATG	2 cut(s)	498, 803
BsrFI	RCCGGY	1 cut(s)	568
BsrGI	TGTACA	1 cut(s)	1210
BsrI	ACTGG	3 cut(s)	218, 587, 748
BssAI	RCCGGY	1 cut(s)	568
BssECI	CCNNGG	4 cut(s)	135, 445, 936, 1077
BssMI	GATC	5 cut(s)	25, 384, 474, 985, 1018
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	434, 657
Bst4CI	ACNGT	3 cut(s)	289, 723, 1118
Bst6I	CTCTTC	1 cut(s)	615
BstAUI	TGTACA	1 cut(s)	1210
BstBI	TTCGAA	1 cut(s)	651
BstC8I	GCNNGC	1 cut(s)	470
BstDEI	CTNAG	3 cut(s)	309, 560, 1152
BstDSI	CCRYGG	2 cut(s)	135, 445
BstF5I	GGATG	3 cut(s)	19, 39, 1057
BstH2I	RGCGCY	1 cut(s)	944
BstHHI	GCGC	1 cut(s)	943
BstKTI	GATC	5 cut(s)	28, 387, 477, 988, 1021
BstMBI	GATC	5 cut(s)	25, 384, 474, 985, 1018
BstMWI	GCNNNNNNNGC	4 cut(s)	404, 1068, 1097, 1148
BstNI	CCWGG	2 cut(s)	434, 657
BstSCI	CCNGG	4 cut(s)	76, 432, 655, 1076
BstV1I	GCAGC	2 cut(s)	748, 880
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	1 cut(s)	25
BstXI	CCANNNNNNTGG	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	25
BsuI	GTATCC	1 cut(s)	287
BsuRI	GGCC	3 cut(s)	444, 1076, 1142
BtgI	CCRYGG	2 cut(s)	135, 445
BtsCI	GGATG	3 cut(s)	19, 39, 1057
BtsIMutI	CAGTG	3 cut(s)	594, 764, 1123
Cac8I	GCNNGC	1 cut(s)	470
CaiI	CAGNNNCTG	1 cut(s)	213
CfoI	GCGC	1 cut(s)	943
Cfr10I	RCCGGY	1 cut(s)	568
Cfr13I	GGNCC	5 cut(s)	139, 530, 584, 964, 1140
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	1211
CviAII	CATG	3 cut(s)	59, 136, 1148
CviQI	GTAC	1 cut(s)	1211
DdeI	CTNAG	3 cut(s)	309, 560, 1152
DpnI	GATC	5 cut(s)	27, 386, 476, 987, 1020
DpnII	GATC	5 cut(s)	25, 384, 474, 985, 1018
DraI	TTTAAA	1 cut(s)	508
EaeI	YGGCCR	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	2 cut(s)	400, 664
Eco47I	GGWCC	4 cut(s)	139, 530, 584, 964
Eco57I	CTGAAG	1 cut(s)	788
Eco88I	CYCGRG	2 cut(s)	408, 922
EcoRI	GAATTC	1 cut(s)	224
EcoRII	CCWGG	2 cut(s)	432, 655
EcoT14I	CCWWGG	1 cut(s)	135
EcoT22I	ATGCAT	1 cut(s)	695
EcoT38I	GRGCYC	2 cut(s)	400, 664
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	3 cut(s)	62, 139, 1151
FaiI	YATR	9 cut(s)	60, 137, 421, 423, 441, 852, 1149, 1195, 1224
FatI	CATG	3 cut(s)	58, 135, 1147
FauI	CCCGC	1 cut(s)	819
Fnu4HI	GCNGC	2 cut(s)	762, 869
FokI	GGATG	3 cut(s)	6, 26, 1064
FriOI	GRGCYC	2 cut(s)	400, 664
Fsp4HI	GCNGC	2 cut(s)	762, 869
FspBI	CTAG	4 cut(s)	239, 416, 944, 1232
GlaI	GCGC	1 cut(s)	942
GluI	GCNGC	2 cut(s)	762, 869
GsuI	CTGGAG	1 cut(s)	1156
HaeII	RGCGCY	1 cut(s)	944
HaeIII	GGCC	3 cut(s)	444, 1076, 1142
HapII	CCGG	4 cut(s)	78, 569, 780, 1077
HgaI	GACGC	1 cut(s)	221
HhaI	GCGC	1 cut(s)	943
Hin1II	CATG	3 cut(s)	62, 139, 1151
Hin6I	GCGC	1 cut(s)	941
HinP1I	GCGC	1 cut(s)	941
HincII	GTYRAC	1 cut(s)	236
HindII	GTYRAC	1 cut(s)	236
HinfI	GANTC	5 cut(s)	69, 574, 788, 797, 910
HpaII	CCGG	4 cut(s)	78, 569, 780, 1077
HphI	GGTGA	4 cut(s)	121, 497, 583, 1147
Hpy166II	GTNNAC	2 cut(s)	236, 1213
Hpy188I	TCNGA	2 cut(s)	937, 1023
Hpy188III	TCNNGA	2 cut(s)	23, 548
Hpy8I	GTNNAC	2 cut(s)	236, 1213
HpyAV	CCTTC	3 cut(s)	384, 977, 1123
HpyCH4III	ACNGT	3 cut(s)	289, 723, 1118
HpyF10VI	GCNNNNNNNGC	4 cut(s)	404, 1068, 1097, 1148
HpyF3I	CTNAG	3 cut(s)	309, 560, 1152
Hsp92II	CATG	3 cut(s)	62, 139, 1151
HspAI	GCGC	1 cut(s)	941
Kzo9I	GATC	5 cut(s)	25, 384, 474, 985, 1018
LmnI	GCTCC	4 cut(s)	364, 659, 823, 1224
Lsp1109I	GCAGC	2 cut(s)	748, 880
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	4 cut(s)	239, 416, 944, 1232
MaeIII	GTNAC	3 cut(s)	127, 209, 907
MalI	GATC	5 cut(s)	27, 386, 476, 987, 1020
MbiI	CCGCTC	1 cut(s)	826
MboI	GATC	5 cut(s)	25, 384, 474, 985, 1018
MboII	GAAGA	6 cut(s)	190, 372, 632, 748, 1067, 1159
MfeI	CAATTG	3 cut(s)	710, 792, 959
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	2 cut(s)	400, 664
MlyI	GAGTC	2 cut(s)	63, 904
MmeI	TCCRAC	2 cut(s)	386, 597
Mph1103I	ATGCAT	1 cut(s)	695
MseI	TTAA	4 cut(s)	252, 507, 831, 882
MslI	CAYNNNNRTG	2 cut(s)	63, 134
MspI	CCGG	4 cut(s)	78, 569, 780, 1077
MspR9I	CCNGG	4 cut(s)	78, 434, 657, 1078
MunI	CAATTG	3 cut(s)	710, 792, 959
Mva1269I	GAATGC	1 cut(s)	695
MvaI	CCWGG	2 cut(s)	434, 657
MwoI	GCNNNNNNNGC	4 cut(s)	404, 1068, 1097, 1148
NciI	CCSGG	2 cut(s)	78, 1078
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	5 cut(s)	25, 384, 474, 985, 1018
NlaIII	CATG	3 cut(s)	62, 139, 1151
NlaIV	GGNNCC	6 cut(s)	82, 360, 531, 594, 661, 1220
NmuCI	GTSAC	2 cut(s)	127, 907
NsiI	ATGCAT	1 cut(s)	695
NspV	TTCGAA	1 cut(s)	651
PaeR7I	CTCGAG	1 cut(s)	408
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PctI	GAATGC	1 cut(s)	695
PfeI	GAWTC	3 cut(s)	574, 788, 797
PkrI	GCNGC	2 cut(s)	763, 870
PleI	GAGTC	2 cut(s)	63, 904
PpsI	GAGTC	2 cut(s)	63, 904
Psp6I	CCWGG	2 cut(s)	432, 655
PspGI	CCWGG	2 cut(s)	432, 655
PspN4I	GGNNCC	6 cut(s)	82, 360, 531, 594, 661, 1220
PspPI	GGNCC	5 cut(s)	139, 530, 584, 964, 1140
PspXI	VCTCGAGB	1 cut(s)	408
PstNI	CAGNNNCTG	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	1 cut(s)	1212
RsaNI	GTAC	1 cut(s)	1211
RseI	CAYNNNNRTG	2 cut(s)	63, 134
SaqAI	TTAA	4 cut(s)	252, 507, 831, 882
SatI	GCNGC	2 cut(s)	762, 869
Sau3AI	GATC	5 cut(s)	25, 384, 474, 985, 1018
Sau96I	GGNCC	5 cut(s)	139, 530, 584, 964, 1140
SchI	GAGTC	2 cut(s)	63, 904
ScrFI	CCNGG	4 cut(s)	78, 434, 657, 1078
SduI	GDGCHC	2 cut(s)	400, 664
SfaNI	GCATC	1 cut(s)	484
Sfr274I	CTCGAG	1 cut(s)	408
SfuI	TTCGAA	1 cut(s)	651
SinI	GGWCC	4 cut(s)	139, 530, 584, 964
SlaI	CTCGAG	1 cut(s)	408
SmiMI	CAYNNNNRTG	2 cut(s)	63, 134
SmlI	CTYRAG	2 cut(s)	408, 1184
SmoI	CTYRAG	2 cut(s)	408, 1184
SsiI	CCGC	2 cut(s)	132, 826
SspMI	CTAG	4 cut(s)	239, 416, 944, 1232
StyD4I	CCNGG	4 cut(s)	76, 432, 655, 1076
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	3 cut(s)	289, 723, 1118
TaqI	TCGA	5 cut(s)	148, 201, 383, 409, 651
TatI	WGTACW	1 cut(s)	1210
TfiI	GAWTC	3 cut(s)	574, 788, 797
Tru1I	TTAA	4 cut(s)	252, 507, 831, 882
Tru9I	TTAA	4 cut(s)	252, 507, 831, 882
TscAI	CASTG	3 cut(s)	594, 771, 1123
TseFI	GTSAC	2 cut(s)	127, 907
TseI	GCWGC	2 cut(s)	761, 868
Tsp45I	GTSAC	2 cut(s)	127, 907
TspDTI	ATGAA	4 cut(s)	28, 357, 982, 1068
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	3 cut(s)	594, 771, 1123
VpaK11BI	GGWCC	4 cut(s)	139, 530, 584, 964
XapI	RAATTY	2 cut(s)	224, 341
XhoI	CTCGAG	1 cut(s)	408
XspI	CTAG	4 cut(s)	239, 416, 944, 1232
Zsp2I	ATGCAT	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.