RchiOBHm_Chr5g0009591

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000510
Physical Location & Seq
Forward (+)
6347282 .. 6349056
1775 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29046

Sequence Viewer

Length: 1302 bp
ATGGGTCATCTGACTCCATTCCTCCACATCTCCAACAAACTCGCAGAAAGAGGCCACAAGATCTCTTTGTTTTTACCTCTCAAAACTCAATCCAAGTTGCAGCACTATAATCTCCACCCTCATCTCATCACCTTCATTCCTATCAATGTCCCTCATGTCGATGGCCTTCCTCCGGGGACTGAAACGACAGCTGACATTCCTCTCTCTTTGGGCTCTCTTCTTGCTACCGCCATGGACCTCACTCGACCCCAAATCGAACAATCTCTCCTCAAACTCAAGCCTGATTTTGTGTTCTTCGATTTTAGTTACTGGTTGCCTGCATTGTTGCGTGAACTAGGCAATAACATTAAGTCAGTATGTTACTGGGTAATTAATCCTGCAGCTATGTGGTACGGCTTGCGAAGTCTAGGCCTGCCTAGAAAAAATCAATCGGATGAAGCTGATCGTTCATTCTCATTACGAACTCACGAAGCTCGAGCTTTTGAAGCCATGATGAACATGGAATATGGCAGGGAGGTAACATTCAGCAAACGCCTATTGACCACTTTAAGCGATTGTGATGCAATTTGTTTCCAAACTTGCAGAGAATTCGCAGGGCCATTTTGTAACTATATTGAACTCCAAATGAACAAGCCAGTAATTCTTGCTGGGCCAGTGATGCCAGATCCCCCGAGTTCACAGTTGGAAGAGAAATGCGCAACATGGCTTGGAGGGTTCAAACCCAGAACCGTGATATTCTGTGCTCTTGGAACTGAATATATTCTCACAAAGCAACAACTGCAACAACTATTATTGGGTTTTGAGCTTACTGGTTTGCCATTCTTCGCTGCCCTGAAACCGCCAACCGGAGTTGAATCAATTGAATCGGCAGTGCCAGAAGGCTTTGAAGAGCGTGTTAAAGAAAAAGGGGTTGTTTATGGGGGTTGGGTTCAGCAGCCTTTAATACTGAAGCACCCATCTATAGGTTGCTTTGTGACTCACTGCGGTCCAGGGTCTTTAAACGAGGCGTTGCTGAATGAGTGCCAATTGGTGTTTTTGCCAAATATTATTGATCAGGTAATCAACGCGAGAATGATGAGCGGTGATTTGAAAGTTGGAGTTGAAATTGAGAAAGGGGATGAAGATGGATTGTTCACCAAGGAAGGTGTTTGCAAAGCTGTGAGAGCTGTGATGGATGAGGACAGTCAGGTTGGAAAGGAGGTGAGCACCAACCATGCCAAGTGGAGAGAGTTCATCTCCGGTAAAGGGCTTGAGAGCTCATATATTGATGGTTTAGTGCAGAAGTTGCATGACCTCCTATGA

Protein Analysis

433

Amino Acids

48.32

Weight (kDa)

5.88

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 308 - 395 6.2e-09 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 697
AccBSI CCGCTC 1 cut(s) 1080
AccII CGCG 1 cut(s) 1067
AciI CCGC 4 cut(s) 228, 839, 984, 1080
AclWI GGATC 1 cut(s) 659
AcsI RAATTY 1 cut(s) 587
AcuI CTGAAG 1 cut(s) 968
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 4 cut(s) 172, 845, 962, 1245
AgsI TTSAA 8 cut(s) 485, 617, 718, 854, 863, 887, 1090, 1103
AjnI CCWGG 1 cut(s) 988
AloI GAACNNNNNNTCC 2 cut(s) 249, 281
AluBI AGCT 9 cut(s) 191, 383, 440, 473, 479, 805, 1157, 1166, 1257
AluI AGCT 9 cut(s) 191, 383, 440, 473, 479, 805, 1157, 1166, 1257
Alw21I GWGCWC 3 cut(s) 745, 1208, 1259
AlwI GGATC 1 cut(s) 659
Ama87I CYCGRG 2 cut(s) 474, 670
AoxI GGCC 5 cut(s) 52, 163, 409, 596, 650
ApeKI GCWGC 4 cut(s) 100, 380, 827, 934
ApoI RAATTY 1 cut(s) 587
AseI ATTAAT 1 cut(s) 372
Asp700I GAANNNNTTC 1 cut(s) 759
AspLEI GCGC 1 cut(s) 698
AspS9I GGNCC 4 cut(s) 235, 596, 650, 986
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 4 cut(s) 121, 1094, 1126, 1213
AvaI CYCGRG 2 cut(s) 474, 670
AvaII GGWCC 2 cut(s) 235, 986
BanII GRGCYC 2 cut(s) 215, 1259
Bbv12I GWGCWC 3 cut(s) 745, 1208, 1259
BbvI GCAGC 4 cut(s) 112, 392, 814, 946
BccI CCATC 5 cut(s) 155, 964, 1118, 1165, 1262
BceAI ACGGC 1 cut(s) 409
BcgI CGANNNNNNTGC 4 cut(s) 542, 571, 576, 605
BciT130I CCWGG 1 cut(s) 990
BclI TGATCA 1 cut(s) 1051
BcnI CCSGG 1 cut(s) 174
BfaI CTAG 3 cut(s) 335, 407, 417
BfmI CTRYAG 2 cut(s) 378, 960
BglII AGATCT 1 cut(s) 60
BisI GCNGC 4 cut(s) 101, 381, 828, 935
BlsI GCNGC 4 cut(s) 102, 382, 829, 936
Bme1390I CCNGG 2 cut(s) 174, 990
Bme18I GGWCC 2 cut(s) 235, 986
BmeT110I CYCGRG 2 cut(s) 474, 670
BmgT120I GGNCC 4 cut(s) 235, 596, 650, 986
BmrFI CCNGG 2 cut(s) 174, 990
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 2 cut(s) 550, 648
BmuI ACTGGG 1 cut(s) 373
BplI GAGNNNNNCTC 2 cut(s) 1220, 1252
BpuEI CTTGAG 2 cut(s) 260, 1271
BpuMI CCSGG 1 cut(s) 174
BsaJI CCNNGG 4 cut(s) 173, 231, 989, 1137
BsaWI WCCGGW 2 cut(s) 845, 1238
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 4 cut(s) 172, 845, 962, 1245
Bse1I ACTGG 5 cut(s) 314, 368, 635, 653, 814
BseBI CCWGG 1 cut(s) 990
BseDI CCNNGG 4 cut(s) 173, 231, 989, 1137
BseGI GGATG 3 cut(s) 439, 1123, 1180
BseLI CCNNNNNNNGG 4 cut(s) 172, 845, 962, 1245
BseNI ACTGG 5 cut(s) 314, 368, 635, 653, 814
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 4 cut(s) 112, 392, 814, 946
BseYI CCCAGC 1 cut(s) 647
BsgI GTGCAG 1 cut(s) 1298
Bsh1236I CGCG 1 cut(s) 1067
BshFI GGCC 5 cut(s) 54, 165, 411, 598, 652
BsiHKAI GWGCWC 3 cut(s) 745, 1208, 1259
BsiHKCI CYCGRG 2 cut(s) 474, 670
BsiSI CCGG 3 cut(s) 173, 846, 1239
BslFI GGGAC 2 cut(s) 134, 190
BslI CCNNNNNNNGG 4 cut(s) 172, 845, 962, 1245
BsmFI GGGAC 2 cut(s) 134, 190
BsnI GGCC 5 cut(s) 54, 165, 411, 598, 652
BsoBI CYCGRG 2 cut(s) 474, 670
Bsp1286I GDGCHC 4 cut(s) 215, 745, 1208, 1259
Bsp143I GATC 4 cut(s) 60, 442, 664, 1051
Bsp19I CCATGG 1 cut(s) 231
BspACI CCGC 4 cut(s) 228, 839, 984, 1080
BspANI GGCC 5 cut(s) 54, 165, 411, 598, 652
BspFNI CGCG 1 cut(s) 1067
BspMAI CTGCAG 1 cut(s) 382
BspPI GGATC 1 cut(s) 659
BspQI GCTCTTC 1 cut(s) 882
BsrBI CCGCTC 1 cut(s) 1080
BsrI ACTGG 5 cut(s) 314, 368, 635, 653, 814
BssECI CCNNGG 4 cut(s) 173, 231, 989, 1137
BssMI GATC 4 cut(s) 60, 442, 664, 1051
BssT1I CCWWGG 2 cut(s) 231, 1137
Bst2UI CCWGG 1 cut(s) 990
Bst4CI ACNGT 3 cut(s) 681, 730, 1184
Bst6I CTCTTC 3 cut(s) 222, 681, 882
BstAPI GCANNNNNTGC 2 cut(s) 778, 1285
BstC8I GCNNGC 3 cut(s) 318, 398, 413
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 3 cut(s) 439, 1123, 1180
BstFNI CGCG 1 cut(s) 1067
BstHHI GCGC 1 cut(s) 698
BstKTI GATC 4 cut(s) 63, 445, 667, 1054
BstMBI GATC 4 cut(s) 60, 442, 664, 1051
BstMWI GCNNNNNNNGC 5 cut(s) 485, 658, 778, 1163, 1285
BstNI CCWGG 1 cut(s) 990
BstSCI CCNGG 2 cut(s) 172, 988
BstSFI CTRYAG 2 cut(s) 378, 960
BstUI CGCG 1 cut(s) 1067
BstV1I GCAGC 4 cut(s) 112, 392, 814, 946
BstX2I RGATCY 2 cut(s) 60, 664
BstYI RGATCY 2 cut(s) 60, 664
BsuRI GGCC 5 cut(s) 54, 165, 411, 598, 652
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 3 cut(s) 439, 1123, 1180
BtsI GCAGTG 2 cut(s) 876, 979
BtsIMutI CAGTG 3 cut(s) 660, 876, 979
Cac8I GCNNGC 3 cut(s) 318, 398, 413
CfoI GCGC 1 cut(s) 698
Cfr13I GGNCC 4 cut(s) 235, 596, 650, 986
Csp6I GTAC 1 cut(s) 391
CviAII CATG 7 cut(s) 155, 232, 490, 499, 702, 1214, 1289
CviQI GTAC 1 cut(s) 391
DpnI GATC 4 cut(s) 62, 444, 666, 1053
DpnII GATC 4 cut(s) 60, 442, 664, 1051
DraI TTTAAA 1 cut(s) 999
Eam1104I CTCTTC 3 cut(s) 222, 681, 882
EarI CTCTTC 3 cut(s) 222, 681, 882
Ecl136II GAGCTC 1 cut(s) 1257
Eco130I CCWWGG 2 cut(s) 231, 1137
Eco147I AGGCCT 1 cut(s) 411
Eco24I GRGCYC 2 cut(s) 215, 1259
Eco47I GGWCC 2 cut(s) 235, 986
Eco53kI GAGCTC 1 cut(s) 1257
Eco57I CTGAAG 1 cut(s) 968
Eco88I CYCGRG 2 cut(s) 474, 670
EcoICRI GAGCTC 1 cut(s) 1257
EcoRI GAATTC 1 cut(s) 587
EcoRII CCWGG 1 cut(s) 988
EcoT14I CCWWGG 2 cut(s) 231, 1137
EcoT38I GRGCYC 2 cut(s) 215, 1259
ErhI CCWWGG 2 cut(s) 231, 1137
FaeI CATG 7 cut(s) 158, 235, 493, 502, 705, 1217, 1292
FaqI GGGAC 2 cut(s) 134, 190
FatI CATG 7 cut(s) 154, 231, 489, 498, 701, 1213, 1288
FbaI TGATCA 1 cut(s) 1051
Fnu4HI GCNGC 4 cut(s) 101, 381, 828, 935
FokI GGATG 3 cut(s) 446, 1130, 1187
FriOI GRGCYC 2 cut(s) 215, 1259
Fsp4HI GCNGC 4 cut(s) 101, 381, 828, 935
FspBI CTAG 3 cut(s) 335, 407, 417
FspI TGCGCA 1 cut(s) 697
GlaI GCGC 1 cut(s) 697
GluI GCNGC 4 cut(s) 101, 381, 828, 935
GsaI CCCAGC 1 cut(s) 651
HaeIII GGCC 5 cut(s) 54, 165, 411, 598, 652
HapII CCGG 3 cut(s) 173, 846, 1239
HhaI GCGC 1 cut(s) 698
Hin1II CATG 7 cut(s) 158, 235, 493, 502, 705, 1217, 1292
Hin6I GCGC 1 cut(s) 696
HinP1I GCGC 1 cut(s) 696
HinfI GANTC 4 cut(s) 13, 854, 863, 976
HpaII CCGG 3 cut(s) 173, 846, 1239
HphI GGTGA 4 cut(s) 121, 1094, 1126, 1213
Hpy166II GTNNAC 3 cut(s) 332, 677, 1134
Hpy188I TCNGA 2 cut(s) 12, 433
Hpy188III TCNNGA 1 cut(s) 467
Hpy8I GTNNAC 3 cut(s) 332, 677, 1134
HpyAV CCTTC 4 cut(s) 142, 176, 872, 1136
HpyCH4III ACNGT 3 cut(s) 681, 730, 1184
HpyCH4V TGCA 9 cut(s) 100, 320, 380, 563, 582, 781, 1152, 1279, 1288
HpyF10VI GCNNNNNNNGC 5 cut(s) 485, 658, 778, 1163, 1285
Hsp92II CATG 7 cut(s) 158, 235, 493, 502, 705, 1217, 1292
HspAI GCGC 1 cut(s) 696
Ksp22I TGATCA 1 cut(s) 1051
Kzo9I GATC 4 cut(s) 60, 442, 664, 1051
LguI GCTCTTC 1 cut(s) 882
Lsp1109I GCAGC 4 cut(s) 112, 392, 814, 946
LweI GCATC 2 cut(s) 550, 648
MaeI CTAG 3 cut(s) 335, 407, 417
MaeIII GTNAC 5 cut(s) 305, 359, 517, 605, 973
MalI GATC 4 cut(s) 62, 444, 666, 1053
MbiI CCGCTC 1 cut(s) 1080
MboI GATC 4 cut(s) 60, 442, 664, 1051
MboII GAAGA 6 cut(s) 209, 286, 698, 814, 899, 1133
MfeI CAATTG 2 cut(s) 858, 1025
MflI RGATCY 2 cut(s) 60, 664
MhlI GDGCHC 4 cut(s) 215, 745, 1208, 1259
MluCI AATT 7 cut(s) 369, 564, 587, 639, 858, 1025, 1104
MlyI GAGTC 2 cut(s) 7, 970
MmeI TCCRAC 4 cut(s) 57, 663, 1075, 1171
MroXI GAANNNNTTC 1 cut(s) 759
MseI TTAA 6 cut(s) 348, 372, 548, 897, 941, 998
MslI CAYNNNNRTG 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 3 cut(s) 173, 846, 1239
MspR9I CCNGG 2 cut(s) 174, 990
MunI CAATTG 2 cut(s) 858, 1025
MvaI CCWGG 1 cut(s) 990
MvnI CGCG 1 cut(s) 1067
MwoI GCNNNNNNNGC 5 cut(s) 485, 658, 778, 1163, 1285
NciI CCSGG 1 cut(s) 174
NcoI CCATGG 1 cut(s) 231
NdeII GATC 4 cut(s) 60, 442, 664, 1051
NlaIII CATG 7 cut(s) 158, 235, 493, 502, 705, 1217, 1292
NmuCI GTSAC 1 cut(s) 973
NsbI TGCGCA 1 cut(s) 697
PaeR7I CTCGAG 1 cut(s) 474
PceI AGGCCT 1 cut(s) 411
PciSI GCTCTTC 1 cut(s) 882
PdmI GAANNNNTTC 1 cut(s) 759
PfeI GAWTC 2 cut(s) 854, 863
PkrI GCNGC 4 cut(s) 102, 382, 829, 936
PleI GAGTC 2 cut(s) 7, 970
PpsI GAGTC 2 cut(s) 7, 970
PshBI ATTAAT 1 cut(s) 372
Psp124BI GAGCTC 1 cut(s) 1259
Psp6I CCWGG 1 cut(s) 988
PspFI CCCAGC 1 cut(s) 647
PspGI CCWGG 1 cut(s) 988
PspPI GGNCC 4 cut(s) 235, 596, 650, 986
PspXI VCTCGAGB 1 cut(s) 474
PstI CTGCAG 1 cut(s) 382
PsuI RGATCY 2 cut(s) 60, 664
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
RseI CAYNNNNRTG 1 cut(s) 159
SacI GAGCTC 1 cut(s) 1259
SapI GCTCTTC 1 cut(s) 882
SaqAI TTAA 6 cut(s) 348, 372, 548, 897, 941, 998
SatI GCNGC 4 cut(s) 101, 381, 828, 935
Sau3AI GATC 4 cut(s) 60, 442, 664, 1051
Sau96I GGNCC 4 cut(s) 235, 596, 650, 986
SchI GAGTC 2 cut(s) 7, 970
ScrFI CCNGG 2 cut(s) 174, 990
SduI GDGCHC 4 cut(s) 215, 745, 1208, 1259
SfaNI GCATC 2 cut(s) 550, 648
SfcI CTRYAG 2 cut(s) 378, 960
Sfr274I CTCGAG 1 cut(s) 474
SinI GGWCC 2 cut(s) 235, 986
SlaI CTCGAG 1 cut(s) 474
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 3 cut(s) 275, 474, 1250
SmoI CTYRAG 3 cut(s) 275, 474, 1250
Sse9I AATT 7 cut(s) 369, 564, 587, 639, 858, 1025, 1104
SseBI AGGCCT 1 cut(s) 411
SsiI CCGC 4 cut(s) 228, 839, 984, 1080
SspI AATATT 1 cut(s) 1045
SspMI CTAG 3 cut(s) 335, 407, 417
SstI GAGCTC 1 cut(s) 1259
StuI AGGCCT 1 cut(s) 411
StyD4I CCNGG 2 cut(s) 172, 988
StyI CCWWGG 2 cut(s) 231, 1137
TaaI ACNGT 3 cut(s) 681, 730, 1184
TaqI TCGA 5 cut(s) 159, 244, 255, 297, 475
TasI AATT 7 cut(s) 369, 564, 587, 639, 858, 1025, 1104
TfiI GAWTC 2 cut(s) 854, 863
Tru1I TTAA 6 cut(s) 348, 372, 548, 897, 941, 998
Tru9I TTAA 6 cut(s) 348, 372, 548, 897, 941, 998
TscAI CASTG 3 cut(s) 660, 876, 986
TseFI GTSAC 1 cut(s) 973
TseI GCWGC 4 cut(s) 100, 380, 827, 934
Tsp45I GTSAC 1 cut(s) 973
TspDTI ATGAA 7 cut(s) 124, 438, 450, 509, 641, 1134, 1222
TspRI CASTG 3 cut(s) 660, 876, 986
VpaK11BI GGWCC 2 cut(s) 235, 986
VspI ATTAAT 1 cut(s) 372
XapI RAATTY 1 cut(s) 587
XcmI CCANNNNNNNNNTGG 1 cut(s) 496
XhoI CTCGAG 1 cut(s) 474
XmnI GAANNNNTTC 1 cut(s) 759
XspI CTAG 3 cut(s) 335, 407, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.