Rmu_sc0025487.1_g000001

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025487.1
Physical Location & Seq
Reverse (-)
6742 .. 7959
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025487.1_g000001.1.cds

Sequence Viewer

Length: 1218 bp
atgacatcaacaaccttcattcccctcaatgtccctcacgtcgatggcctccctccggggactgaaacgacagctgacattcctctctctttgggctctcttcttgcaaccgccatggacctcactcgaccccaaatcgaacaatctctcctcaaactcaagcctgattttgtgttcttcgattttagttactggttgcctgcattgttgcgtcaactaggcaataacattaagtcagtaggttactgggtaattaatcctgcaagtgtgtggtacctgctaagcctaggcctgccgagaaagataccattggatgatgctgatgctgtaccgcctttgctgtgtttcagtagttcattctcaatcaagttacgaactcatgaagctcgagcttatgatgccatggcaaacaaggaatttggcagcggattgagatttggcaaacgcatattgacctctttcagcgattgtgatgcaatttgtttcaaaacttgcagggaattcgcagggccattttgtaactattttgaaatccaaatgaacaagccggtcattcttgcaggcccagtggtgccagatcccccaagttcacagttggaagagaaatgggcaaaatggcttggagggttcgaaccaagaaccgtgattttctgtgctcttggatctgaatacattctcacaaagcagcaactgcaacaactattattgggttttgagcttactggtttgccattcttcgctgcccttaaaccgccaaccggagttgaatcaattgaatcggcactgccagaaggctttgaaatgcgtctaaaaggaaaaggggtggttcatgggggttgggttcagcagcctttgatactgaagcacccatctgtgggttgctttgtgactcactgcggttcggggtctttaaatgaggcgttagtgaatgagtgccaattggtgcttctcccgcatgtgggagatcatgttatcaacgcgagaatcttgagtggggatttgaaggcgggagttgaagttgaaaaaggagatgaagatggattgttcaccaaggaaggtgtttgcaaagctgtgaaagcagtgatggatggagacagtgaggtgggaaaggagatgaggaccaaccatgctaagtggagggagttcttctccaataaagggcttgagagctcatacattgatggttttgtgcagaagctgcatgaactgcaacgatga

Protein Analysis

405

Amino Acids

44.66

Weight (kDa)

5.9

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 285
Acc65I GGTACC 1 cut(s) 273
AccB1I GGYRCC 2 cut(s) 273, 571
AccII CGCG 1 cut(s) 980
AciI CCGC 7 cut(s) 111, 332, 426, 752, 897, 953, 1007
AclWI GGATC 2 cut(s) 572, 670
AcsI RAATTY 2 cut(s) 416, 500
AcuI CTGAAG 1 cut(s) 881
AfaI GTAC 2 cut(s) 275, 330
AfiI CCNNNNNNNGG 7 cut(s) 55, 758, 874, 875, 958, 959, 1158
AgsI TTSAA 8 cut(s) 487, 530, 767, 776, 800, 1003, 1016, 1022
AjiI CACGTC 1 cut(s) 40
AjuI GAANNNNNNNTTGG 2 cut(s) 930, 962
AloI GAACNNNNNNTCC 2 cut(s) 132, 164
AluBI AGCT 7 cut(s) 74, 386, 392, 718, 1070, 1170, 1198
AluI AGCT 7 cut(s) 74, 386, 392, 718, 1070, 1170, 1198
Alw21I GWGCWC 2 cut(s) 658, 1172
Alw26I GTCTC 1 cut(s) 1086
AlwI GGATC 2 cut(s) 572, 670
AlwNI CAGNNNCTG 2 cut(s) 691, 1198
Ama87I CYCGRG 1 cut(s) 387
AoxI GGCC 4 cut(s) 46, 289, 509, 562
ApeKI GCWGC 5 cut(s) 423, 685, 740, 847, 1198
ApoI RAATTY 2 cut(s) 416, 500
AseI ATTAAT 1 cut(s) 255
Asp700I GAANNNNTTC 1 cut(s) 672
Asp718I GGTACC 1 cut(s) 273
AspA2I CCTAGG 1 cut(s) 286
AspS9I GGNCC 4 cut(s) 118, 509, 563, 1119
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 1039
AsuII TTCGAA 1 cut(s) 630
AvaI CYCGRG 1 cut(s) 387
AvaII GGWCC 2 cut(s) 118, 1119
AvrII CCTAGG 1 cut(s) 286
BanI GGYRCC 2 cut(s) 273, 571
BanII GRGCYC 2 cut(s) 98, 1172
Bbv12I GWGCWC 2 cut(s) 658, 1172
BbvI GCAGC 5 cut(s) 435, 697, 727, 859, 1185
BccI CCATC 6 cut(s) 38, 877, 1031, 1078, 1082, 1175
BcgI CGANNNNNNTGC 4 cut(s) 455, 484, 489, 518
BcnI CCSGG 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 1086
BfaI CTAG 2 cut(s) 218, 287
BfuAI ACCTGC 1 cut(s) 285
BisI GCNGC 5 cut(s) 424, 686, 741, 848, 1199
BlnI CCTAGG 1 cut(s) 286
BlpI GCTNAGC 1 cut(s) 281
BlsI GCNGC 5 cut(s) 425, 687, 742, 849, 1200
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 2 cut(s) 118, 1119
BmeT110I CYCGRG 1 cut(s) 387
BmgBI CACGTC 1 cut(s) 40
BmgT120I GGNCC 4 cut(s) 118, 509, 563, 1119
BmiI GGNNCC 2 cut(s) 275, 573
BmrFI CCNGG 1 cut(s) 57
BmrI ACTGGG 2 cut(s) 256, 560
BmsI GCATC 4 cut(s) 307, 313, 388, 463
BmuI ACTGGG 2 cut(s) 256, 560
BplI GAGNNNNNCTC 2 cut(s) 1133, 1165
Bpu1102I GCTNAGC 1 cut(s) 281
Bpu14I TTCGAA 1 cut(s) 630
BpuEI CTTGAG 3 cut(s) 143, 1009, 1184
BpuMI CCSGG 1 cut(s) 57
BsaJI CCNNGG 5 cut(s) 56, 114, 286, 402, 1050
BsaWI WCCGGW 1 cut(s) 758
BsaXI ACNNNNNCTCC 6 cut(s) 132, 162, 954, 984, 1002, 1032
Bsc4I CCNNNNNNNGG 7 cut(s) 55, 758, 874, 875, 958, 959, 1158
Bse118I RCCGGY 1 cut(s) 547
Bse1I ACTGG 4 cut(s) 197, 251, 566, 727
BseDI CCNNGG 5 cut(s) 56, 114, 286, 402, 1050
BseGI GGATG 2 cut(s) 319, 1093
BseLI CCNNNNNNNGG 7 cut(s) 55, 758, 874, 875, 958, 959, 1158
BseNI ACTGG 4 cut(s) 197, 251, 566, 727
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 5 cut(s) 435, 697, 727, 859, 1185
BsgI GTGCAG 1 cut(s) 1211
Bsh1236I CGCG 1 cut(s) 980
BshFI GGCC 4 cut(s) 48, 291, 511, 564
BshNI GGYRCC 2 cut(s) 273, 571
BsiHKAI GWGCWC 2 cut(s) 658, 1172
BsiHKCI CYCGRG 1 cut(s) 387
BsiSI CCGG 3 cut(s) 56, 548, 759
BslFI GGGAC 2 cut(s) 17, 73
BslI CCNNNNNNNGG 7 cut(s) 55, 758, 874, 875, 958, 959, 1158
BsmAI GTCTC 1 cut(s) 1086
BsmFI GGGAC 2 cut(s) 17, 73
BsnI GGCC 4 cut(s) 48, 291, 511, 564
BsoBI CYCGRG 1 cut(s) 387
Bsp119I TTCGAA 1 cut(s) 630
Bsp1286I GDGCHC 3 cut(s) 98, 658, 1172
Bsp143I GATC 3 cut(s) 577, 662, 964
Bsp1720I GCTNAGC 1 cut(s) 281
Bsp19I CCATGG 2 cut(s) 114, 402
BspACI CCGC 7 cut(s) 111, 332, 426, 752, 897, 953, 1007
BspANI GGCC 4 cut(s) 48, 291, 511, 564
BspFNI CGCG 1 cut(s) 980
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 2 cut(s) 275, 573
BspMI ACCTGC 1 cut(s) 285
BspPI GGATC 2 cut(s) 572, 670
BspT104I TTCGAA 1 cut(s) 630
BspT107I GGYRCC 2 cut(s) 273, 571
BsrFI RCCGGY 1 cut(s) 547
BsrI ACTGG 4 cut(s) 197, 251, 566, 727
BssAI RCCGGY 1 cut(s) 547
BssECI CCNNGG 5 cut(s) 56, 114, 286, 402, 1050
BssMI GATC 3 cut(s) 577, 662, 964
BssT1I CCWWGG 4 cut(s) 114, 286, 402, 1050
Bst4CI ACNGT 3 cut(s) 594, 643, 1097
Bst6I CTCTTC 2 cut(s) 105, 594
BstAPI GCANNNNNTGC 3 cut(s) 691, 1198, 1207
BstBI TTCGAA 1 cut(s) 630
BstC8I GCNNGC 3 cut(s) 201, 293, 562
BstDEI CTNAG 2 cut(s) 281, 1131
BstDSI CCRYGG 2 cut(s) 114, 402
BstF5I GGATG 2 cut(s) 319, 1093
BstFNI CGCG 1 cut(s) 980
BstKTI GATC 3 cut(s) 580, 665, 967
BstMAI GTCTC 1 cut(s) 1086
BstMBI GATC 3 cut(s) 577, 662, 964
BstMWI GCNNNNNNNGC 6 cut(s) 398, 691, 952, 1076, 1198, 1207
BstNSI RCATGY 1 cut(s) 959
BstSCI CCNGG 1 cut(s) 55
BstUI CGCG 1 cut(s) 980
BstV1I GCAGC 5 cut(s) 435, 697, 727, 859, 1185
BstX2I RGATCY 2 cut(s) 577, 662
BstYI RGATCY 2 cut(s) 577, 662
BsuRI GGCC 4 cut(s) 48, 291, 511, 564
BtgI CCRYGG 2 cut(s) 114, 402
BtrI CACGTC 1 cut(s) 40
BtsCI GGATG 2 cut(s) 319, 1093
BtsI GCAGTG 3 cut(s) 782, 892, 1086
BtsIMutI CAGTG 5 cut(s) 573, 782, 892, 1086, 1102
BveI ACCTGC 1 cut(s) 285
Cac8I GCNNGC 3 cut(s) 201, 293, 562
CaiI CAGNNNCTG 2 cut(s) 691, 1198
CciI TCATGA 1 cut(s) 379
Cfr10I RCCGGY 1 cut(s) 547
Cfr13I GGNCC 4 cut(s) 118, 509, 563, 1119
CseI GACGC 2 cut(s) 200, 794
Csp6I GTAC 2 cut(s) 274, 329
CviAII CATG 8 cut(s) 115, 380, 403, 830, 956, 968, 1127, 1202
CviQI GTAC 2 cut(s) 274, 329
DdeI CTNAG 2 cut(s) 281, 1131
DpnI GATC 3 cut(s) 579, 664, 966
DpnII GATC 3 cut(s) 577, 662, 964
DraI TTTAAA 1 cut(s) 912
Eam1104I CTCTTC 2 cut(s) 105, 594
EarI CTCTTC 2 cut(s) 105, 594
Ecl136II GAGCTC 1 cut(s) 1170
Eco130I CCWWGG 4 cut(s) 114, 286, 402, 1050
Eco147I AGGCCT 1 cut(s) 291
Eco24I GRGCYC 2 cut(s) 98, 1172
Eco47I GGWCC 2 cut(s) 118, 1119
Eco53kI GAGCTC 1 cut(s) 1170
Eco57I CTGAAG 1 cut(s) 881
Eco88I CYCGRG 1 cut(s) 387
EcoICRI GAGCTC 1 cut(s) 1170
EcoRI GAATTC 1 cut(s) 500
EcoT14I CCWWGG 4 cut(s) 114, 286, 402, 1050
EcoT38I GRGCYC 2 cut(s) 98, 1172
ErhI CCWWGG 4 cut(s) 114, 286, 402, 1050
FaeI CATG 8 cut(s) 118, 383, 406, 833, 959, 971, 1130, 1205
FaqI GGGAC 2 cut(s) 17, 73
FatI CATG 8 cut(s) 114, 379, 402, 829, 955, 967, 1126, 1201
FauI CCCGC 2 cut(s) 960, 1000
Fnu4HI GCNGC 5 cut(s) 424, 686, 741, 848, 1199
FokI GGATG 2 cut(s) 326, 1100
FriOI GRGCYC 2 cut(s) 98, 1172
Fsp4HI GCNGC 5 cut(s) 424, 686, 741, 848, 1199
FspBI CTAG 2 cut(s) 218, 287
GluI GCNGC 5 cut(s) 424, 686, 741, 848, 1199
HaeIII GGCC 4 cut(s) 48, 291, 511, 564
HapII CCGG 3 cut(s) 56, 548, 759
HgaI GACGC 2 cut(s) 200, 794
Hin1II CATG 8 cut(s) 118, 383, 406, 833, 959, 971, 1130, 1205
HincII GTYRAC 1 cut(s) 215
HindII GTYRAC 1 cut(s) 215
HinfI GANTC 4 cut(s) 767, 776, 889, 984
HpaII CCGG 3 cut(s) 56, 548, 759
HphI GGTGA 1 cut(s) 1039
Hpy166II GTNNAC 3 cut(s) 215, 590, 1047
Hpy188I TCNGA 1 cut(s) 667
Hpy188III TCNNGA 2 cut(s) 380, 988
Hpy8I GTNNAC 3 cut(s) 215, 590, 1047
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 4 cut(s) 25, 785, 997, 1049
HpyCH4III ACNGT 3 cut(s) 594, 643, 1097
HpyCH4IV ACGT 1 cut(s) 39
HpyF10VI GCNNNNNNNGC 6 cut(s) 398, 691, 952, 1076, 1198, 1207
HpyF3I CTNAG 2 cut(s) 281, 1131
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 8 cut(s) 118, 383, 406, 833, 959, 971, 1130, 1205
KpnI GGTACC 1 cut(s) 277
Kzo9I GATC 3 cut(s) 577, 662, 964
Lsp1109I GCAGC 5 cut(s) 435, 697, 727, 859, 1185
LweI GCATC 4 cut(s) 307, 313, 388, 463
MaeI CTAG 2 cut(s) 218, 287
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 5 cut(s) 188, 242, 369, 518, 886
MalI GATC 3 cut(s) 579, 664, 966
MboI GATC 3 cut(s) 577, 662, 964
MboII GAAGA 6 cut(s) 92, 169, 611, 727, 1046, 1138
MfeI CAATTG 2 cut(s) 771, 938
MflI RGATCY 2 cut(s) 577, 662
MhlI GDGCHC 3 cut(s) 98, 658, 1172
MluCI AATT 6 cut(s) 252, 416, 477, 500, 771, 938
MlyI GAGTC 1 cut(s) 883
MmeI TCCRAC 1 cut(s) 576
MroXI GAANNNNTTC 1 cut(s) 672
MseI TTAA 4 cut(s) 231, 255, 747, 911
MslI CAYNNNNRTG 1 cut(s) 42
MspA1I CMGCKG 2 cut(s) 74, 426
MspI CCGG 3 cut(s) 56, 548, 759
MspR9I CCNGG 1 cut(s) 57
MunI CAATTG 2 cut(s) 771, 938
MvnI CGCG 1 cut(s) 980
MwoI GCNNNNNNNGC 6 cut(s) 398, 691, 952, 1076, 1198, 1207
NciI CCSGG 1 cut(s) 57
NcoI CCATGG 2 cut(s) 114, 402
NdeII GATC 3 cut(s) 577, 662, 964
NlaIII CATG 8 cut(s) 118, 383, 406, 833, 959, 971, 1130, 1205
NlaIV GGNNCC 2 cut(s) 275, 573
NmeAIII GCCGAG 1 cut(s) 321
NmuCI GTSAC 1 cut(s) 886
NspI RCATGY 1 cut(s) 959
NspV TTCGAA 1 cut(s) 630
PaeR7I CTCGAG 1 cut(s) 387
PagI TCATGA 1 cut(s) 379
PceI AGGCCT 1 cut(s) 291
PdmI GAANNNNTTC 1 cut(s) 672
PfeI GAWTC 3 cut(s) 767, 776, 984
PkrI GCNGC 5 cut(s) 425, 687, 742, 849, 1200
PleI GAGTC 1 cut(s) 883
PpsI GAGTC 1 cut(s) 883
PshBI ATTAAT 1 cut(s) 255
Psp124BI GAGCTC 1 cut(s) 1172
PspN4I GGNNCC 2 cut(s) 275, 573
PspPI GGNCC 4 cut(s) 118, 509, 563, 1119
PspXI VCTCGAGB 1 cut(s) 387
PstNI CAGNNNCTG 2 cut(s) 691, 1198
PsuI RGATCY 2 cut(s) 577, 662
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 2 cut(s) 275, 330
RsaNI GTAC 2 cut(s) 274, 329
RseI CAYNNNNRTG 1 cut(s) 42
SacI GAGCTC 1 cut(s) 1172
SaqAI TTAA 4 cut(s) 231, 255, 747, 911
SatI GCNGC 5 cut(s) 424, 686, 741, 848, 1199
Sau3AI GATC 3 cut(s) 577, 662, 964
Sau96I GGNCC 4 cut(s) 118, 509, 563, 1119
SchI GAGTC 1 cut(s) 883
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 3 cut(s) 98, 658, 1172
SfaNI GCATC 4 cut(s) 307, 313, 388, 463
Sfr274I CTCGAG 1 cut(s) 387
SfuI TTCGAA 1 cut(s) 630
SinI GGWCC 2 cut(s) 118, 1119
SlaI CTCGAG 1 cut(s) 387
SmiMI CAYNNNNRTG 1 cut(s) 42
SmlI CTYRAG 4 cut(s) 158, 387, 988, 1163
SmoI CTYRAG 4 cut(s) 158, 387, 988, 1163
Sse9I AATT 6 cut(s) 252, 416, 477, 500, 771, 938
SseBI AGGCCT 1 cut(s) 291
SsiI CCGC 7 cut(s) 111, 332, 426, 752, 897, 953, 1007
SspMI CTAG 2 cut(s) 218, 287
SstI GAGCTC 1 cut(s) 1172
StuI AGGCCT 1 cut(s) 291
StyD4I CCNGG 1 cut(s) 55
StyI CCWWGG 4 cut(s) 114, 286, 402, 1050
TaaI ACNGT 3 cut(s) 594, 643, 1097
TaiI ACGT 1 cut(s) 42
TaqI TCGA 6 cut(s) 42, 127, 138, 180, 388, 630
TasI AATT 6 cut(s) 252, 416, 477, 500, 771, 938
TfiI GAWTC 3 cut(s) 767, 776, 984
Tru1I TTAA 4 cut(s) 231, 255, 747, 911
Tru9I TTAA 4 cut(s) 231, 255, 747, 911
TscAI CASTG 5 cut(s) 573, 789, 899, 1086, 1102
TseFI GTSAC 1 cut(s) 886
TseI GCWGC 5 cut(s) 423, 685, 740, 847, 1198
Tsp45I GTSAC 1 cut(s) 886
TspDTI ATGAA 7 cut(s) 7, 345, 396, 554, 818, 1047, 1218
TspRI CASTG 5 cut(s) 573, 789, 899, 1086, 1102
VpaK11BI GGWCC 2 cut(s) 118, 1119
VspI ATTAAT 1 cut(s) 255
XapI RAATTY 2 cut(s) 416, 500
XceI RCATGY 1 cut(s) 959
XhoI CTCGAG 1 cut(s) 387
XmaJI CCTAGG 1 cut(s) 286
XmnI GAANNNNTTC 1 cut(s) 672
XspI CTAG 2 cut(s) 218, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.