Rh5CG083800

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000510
Physical Location & Seq
Forward (+)
6485912 .. 6487750
1839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG083800.1

Sequence Viewer

Length: 1380 bp
ATGAGTGACCAAACTTTGCATATTGCTATGTATCCCTGGTTTGCTATGGGACATTTGACCTCTTTTCTCCACATCTCCAACAAACTTGCAGAGAGAGGCCACAAAATCTCCTTCTTTATTCCCATCAAAACACAACCCAAGATGGTGCAATTCAATCTCCATCCAGATCTCATTTCGTTCATCCCCATCAATGTTCCTCATGTTGATGGACTCCCTCCCGGCACCGAAACCACAACCGATATTACTTTCCATTTGCACCCCCATCTTGTCACCGCCATGGACCTAACTCGACCCCAAATTGAACAATCCCTTTGCGAACTCAACCCTAACTTCGTGTTCTTCGATTTCAGTTACTGGTTGCCTGAATTCCTGCGTCAACTAGGTAAGAACATTAAGTCTGTGCATTACTGCACAATTAGTCCTGCAACTGTGGGATACCTGATAAGCCCTGAGAGAAAATTGACGGAGAAAATGCTAACCGAATTTGAATACAGGGAGGCTCCAACTTCATTTCCTTCGTCTTCGATTAAGCTACGAGCCCACGAAGCTCGAGGACTAGTATATGGTGCAAACCAGGAATATGGCCGTGGGATTACATTTCTCAAACGCCAACAGATCAATTTTGGTGATTGTGATGCCATTGCATTTAAAACTTGTAGAGAATTGGAGGGTCCATTTTGTAATTATCTTGAAACCCAATTGAGGAAGCCGGTGATTCTTGCTGGTCCAGTGGTGCCAGAGCCTCCAAGTTCGCAGTTGGAAGAGAAATGGGCAAAATGGCTTGGAGGGTTCGAACCAAGAGCCCTGATTTTCTGTGCTTTTGGAAGTGAATGCATTTTGAAAAAAGAACAATTGCAAGAACTGTTGTTGGGTTTTGAGCTTACTGGTTTGCCTTTCTTCGCTGCACTGAAGCCACCAACCGGAGTTGAATCAATTGAATCAGCATTGCCACAAGGGTTTTTGGAGCGGGTTAAAGGAAAAGGGGTTGTTTATGGGGGTTGGGTTCAGCAGCCTTTGATACTTAAACACCCATCTGTGGGTTGCTTTGTGACTCATTGTGGCTCGGGGTCTTTATCCGAGGCGCTAGTGAATGAGTGTCAATTGGTCCTTCTGCCAAATGTGGGAGATCAGTTCATCAATGCGAGAATGATGAGTGGCGATCTGAAAGTGGGAGTTGAGGTTGAGAAAGGGGATGAAGATGGCTTGTTTAGCAAGGCCGGGGTTTGCAAAGCTGTGAAAGCTGTGATTGATGAGGACAGTGAGATTGGGAAGGAGGTGAGGGCCAACCATGCTAAGTGGAGGGAGTTCTTCTCCAGCAAAGGGCTTGAGAACTCATACATTGATGATTTTGTACACAGGCTCCATAAACTGCTAGGATGA

Protein Analysis

459

Amino Acids

51.45

Weight (kDa)

6.26

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 333 - 420 1.6e-11 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 221, 733
AccBSI CCGCTC 1 cut(s) 967
AciI CCGC 2 cut(s) 273, 967
AcoI YGGCCR 1 cut(s) 583
AcsI RAATTY 2 cut(s) 365, 482
AcuI CTGAAG 1 cut(s) 929
AfaI GTAC 1 cut(s) 1353
AfiI CCNNNNNNNGG 6 cut(s) 702, 920, 1036, 1037, 1121, 1320
AgsI TTSAA 7 cut(s) 154, 302, 488, 692, 841, 929, 938
AhlI ACTAGT 1 cut(s) 556
AjnI CCWGG 2 cut(s) 35, 573
AluBI AGCT 5 cut(s) 532, 548, 880, 1232, 1241
AluI AGCT 5 cut(s) 532, 548, 880, 1232, 1241
AlwNI CAGNNNCTG 1 cut(s) 354
Ama87I CYCGRG 2 cut(s) 549, 1063
AoxI GGCC 4 cut(s) 97, 583, 1215, 1281
ApeKI GCWGC 2 cut(s) 902, 1009
ApoI RAATTY 2 cut(s) 365, 482
AspLEI GCGC 1 cut(s) 1084
AspS9I GGNCC 5 cut(s) 280, 671, 725, 1105, 1281
AsuC2I CCSGG 2 cut(s) 219, 1219
AsuHPI GGTGA 4 cut(s) 262, 638, 724, 1288
AsuII TTCGAA 1 cut(s) 792
AvaI CYCGRG 2 cut(s) 549, 1063
AvaII GGWCC 4 cut(s) 280, 671, 725, 1105
BanI GGYRCC 2 cut(s) 221, 733
BanII GRGCYC 2 cut(s) 541, 805
BbsI GAAGAC 1 cut(s) 513
BbvI GCAGC 2 cut(s) 889, 1021
BccI CCATC 8 cut(s) 131, 136, 168, 194, 200, 270, 1039, 1193
BceAI ACGGC 1 cut(s) 570
BciT130I CCWGG 2 cut(s) 37, 575
BciVI GTATCC 2 cut(s) 42, 428
BcnI CCSGG 2 cut(s) 219, 1219
BcuI ACTAGT 1 cut(s) 556
BfaI CTAG 4 cut(s) 380, 557, 1085, 1373
BfoI RGCGCY 1 cut(s) 1085
BfuI GTATCC 2 cut(s) 42, 428
BglII AGATCT 1 cut(s) 166
BisI GCNGC 2 cut(s) 903, 1010
BlsI GCNGC 2 cut(s) 904, 1011
Bme1390I CCNGG 4 cut(s) 37, 219, 575, 1219
Bme18I GGWCC 4 cut(s) 280, 671, 725, 1105
BmeT110I CYCGRG 2 cut(s) 549, 1063
BmgT120I GGNCC 5 cut(s) 280, 671, 725, 1105, 1281
BmiI GGNNCC 5 cut(s) 223, 501, 672, 735, 1361
BmrFI CCNGG 4 cut(s) 37, 219, 575, 1219
BmsI GCATC 1 cut(s) 625
BpiI GAAGAC 1 cut(s) 513
BplI GAGNNNNNCTC 2 cut(s) 1295, 1327
BpmI CTGGAG 1 cut(s) 1297
Bpu14I TTCGAA 1 cut(s) 792
BpuEI CTTGAG 1 cut(s) 1346
BpuMI CCSGG 2 cut(s) 219, 1219
BsaJI CCNNGG 5 cut(s) 35, 276, 586, 1077, 1218
BsaWI WCCGGW 1 cut(s) 920
BsaXI ACNNNNNCTCC 6 cut(s) 92, 122, 1164, 1194, 1344, 1374
Bsc4I CCNNNNNNNGG 6 cut(s) 702, 920, 1036, 1037, 1121, 1320
Bse118I RCCGGY 1 cut(s) 709
Bse1I ACTGG 3 cut(s) 359, 728, 889
Bse3DI GCAATG 2 cut(s) 639, 944
BseBI CCWGG 2 cut(s) 37, 575
BseDI CCNNGG 5 cut(s) 35, 276, 586, 1077, 1218
BseGI GGATG 3 cut(s) 160, 180, 1198
BseLI CCNNNNNNNGG 6 cut(s) 702, 920, 1036, 1037, 1121, 1320
BseMI GCAATG 2 cut(s) 639, 944
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 3 cut(s) 359, 728, 889
BseXI GCAGC 2 cut(s) 889, 1021
BsgI GTGCAG 2 cut(s) 394, 888
BshFI GGCC 4 cut(s) 99, 585, 1217, 1283
BshNI GGYRCC 2 cut(s) 221, 733
BsiHKCI CYCGRG 2 cut(s) 549, 1063
BsiSI CCGG 4 cut(s) 219, 710, 921, 1218
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 6 cut(s) 702, 920, 1036, 1037, 1121, 1320
BsmFI GGGAC 1 cut(s) 63
BsmI GAATGC 1 cut(s) 836
BsnI GGCC 4 cut(s) 99, 585, 1217, 1283
BsoBI CYCGRG 2 cut(s) 549, 1063
Bsp119I TTCGAA 1 cut(s) 792
Bsp1286I GDGCHC 2 cut(s) 541, 805
Bsp1407I TGTACA 1 cut(s) 1351
Bsp143I GATC 4 cut(s) 166, 615, 1126, 1159
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 2 cut(s) 273, 967
BspANI GGCC 4 cut(s) 99, 585, 1217, 1283
BspCNI CTCAG 1 cut(s) 442
BspLI GGNNCC 5 cut(s) 223, 501, 672, 735, 1361
BspT104I TTCGAA 1 cut(s) 792
BspT107I GGYRCC 2 cut(s) 221, 733
BsrBI CCGCTC 1 cut(s) 967
BsrDI GCAATG 2 cut(s) 639, 944
BsrFI RCCGGY 1 cut(s) 709
BsrGI TGTACA 1 cut(s) 1351
BsrI ACTGG 3 cut(s) 359, 728, 889
BssAI RCCGGY 1 cut(s) 709
BssECI CCNNGG 5 cut(s) 35, 276, 586, 1077, 1218
BssMI GATC 4 cut(s) 166, 615, 1126, 1159
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 37, 575
Bst4CI ACNGT 3 cut(s) 430, 864, 1259
Bst6I CTCTTC 1 cut(s) 756
BstAUI TGTACA 1 cut(s) 1351
BstBI TTCGAA 1 cut(s) 792
BstDEI CTNAG 2 cut(s) 450, 1293
BstDSI CCRYGG 2 cut(s) 276, 586
BstF5I GGATG 3 cut(s) 160, 180, 1198
BstH2I RGCGCY 1 cut(s) 1085
BstHHI GCGC 1 cut(s) 1084
BstKTI GATC 4 cut(s) 169, 618, 1129, 1162
BstMBI GATC 4 cut(s) 166, 615, 1126, 1159
BstMWI GCNNNNNNNGC 4 cut(s) 545, 1209, 1238, 1289
BstNI CCWGG 2 cut(s) 37, 575
BstSCI CCNGG 4 cut(s) 35, 217, 573, 1217
BstV1I GCAGC 2 cut(s) 889, 1021
BstV2I GAAGAC 1 cut(s) 513
BstX2I RGATCY 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 581
BstYI RGATCY 1 cut(s) 166
BsuI GTATCC 2 cut(s) 42, 428
BsuRI GGCC 4 cut(s) 99, 585, 1217, 1283
BtgI CCRYGG 2 cut(s) 276, 586
BtsCI GGATG 3 cut(s) 160, 180, 1198
BtsIMutI CAGTG 3 cut(s) 735, 905, 1264
CaiI CAGNNNCTG 1 cut(s) 354
CfoI GCGC 1 cut(s) 1084
Cfr10I RCCGGY 1 cut(s) 709
Cfr13I GGNCC 5 cut(s) 280, 671, 725, 1105, 1281
CseI GACGC 1 cut(s) 362
Csp6I GTAC 1 cut(s) 1352
CviAII CATG 3 cut(s) 200, 277, 1289
CviQI GTAC 1 cut(s) 1352
DdeI CTNAG 2 cut(s) 450, 1293
DpnI GATC 4 cut(s) 168, 617, 1128, 1161
DpnII GATC 4 cut(s) 166, 615, 1126, 1159
DraI TTTAAA 1 cut(s) 649
EaeI YGGCCR 1 cut(s) 583
Eam1104I CTCTTC 1 cut(s) 756
EarI CTCTTC 1 cut(s) 756
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 2 cut(s) 541, 805
Eco47I GGWCC 4 cut(s) 280, 671, 725, 1105
Eco57I CTGAAG 1 cut(s) 929
Eco88I CYCGRG 2 cut(s) 549, 1063
EcoRI GAATTC 1 cut(s) 365
EcoRII CCWGG 2 cut(s) 35, 573
EcoT14I CCWWGG 1 cut(s) 276
EcoT22I ATGCAT 1 cut(s) 836
EcoT38I GRGCYC 2 cut(s) 541, 805
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 3 cut(s) 203, 280, 1292
FaqI GGGAC 1 cut(s) 63
FatI CATG 3 cut(s) 199, 276, 1288
FauI CCCGC 1 cut(s) 960
Fnu4HI GCNGC 2 cut(s) 903, 1010
FokI GGATG 3 cut(s) 147, 167, 1205
FriOI GRGCYC 2 cut(s) 541, 805
Fsp4HI GCNGC 2 cut(s) 903, 1010
FspBI CTAG 4 cut(s) 380, 557, 1085, 1373
GlaI GCGC 1 cut(s) 1083
GluI GCNGC 2 cut(s) 903, 1010
GsuI CTGGAG 1 cut(s) 1297
HaeII RGCGCY 1 cut(s) 1085
HaeIII GGCC 4 cut(s) 99, 585, 1217, 1283
HapII CCGG 4 cut(s) 219, 710, 921, 1218
HgaI GACGC 1 cut(s) 362
HhaI GCGC 1 cut(s) 1084
Hin1II CATG 3 cut(s) 203, 280, 1292
Hin6I GCGC 1 cut(s) 1082
HinP1I GCGC 1 cut(s) 1082
HincII GTYRAC 1 cut(s) 377
HindII GTYRAC 1 cut(s) 377
HinfI GANTC 5 cut(s) 210, 715, 929, 938, 1051
HpaII CCGG 4 cut(s) 219, 710, 921, 1218
HphI GGTGA 4 cut(s) 262, 638, 724, 1288
Hpy166II GTNNAC 2 cut(s) 377, 1354
Hpy188I TCNGA 2 cut(s) 1078, 1164
Hpy188III TCNNGA 2 cut(s) 164, 689
Hpy8I GTNNAC 2 cut(s) 377, 1354
HpyAV CCTTC 4 cut(s) 121, 525, 1118, 1264
HpyCH4III ACNGT 3 cut(s) 430, 864, 1259
HpyF10VI GCNNNNNNNGC 4 cut(s) 545, 1209, 1238, 1289
HpyF3I CTNAG 2 cut(s) 450, 1293
Hsp92II CATG 3 cut(s) 203, 280, 1292
HspAI GCGC 1 cut(s) 1082
Kzo9I GATC 4 cut(s) 166, 615, 1126, 1159
LmnI GCTCC 3 cut(s) 505, 964, 1365
Lsp1109I GCAGC 2 cut(s) 889, 1021
LweI GCATC 1 cut(s) 625
MaeI CTAG 4 cut(s) 380, 557, 1085, 1373
MaeIII GTNAC 4 cut(s) 5, 268, 350, 1048
MalI GATC 4 cut(s) 168, 617, 1128, 1161
MbiI CCGCTC 1 cut(s) 967
MboI GATC 4 cut(s) 166, 615, 1126, 1159
MboII GAAGA 6 cut(s) 331, 513, 773, 889, 1208, 1300
MfeI CAATTG 4 cut(s) 698, 851, 933, 1100
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 2 cut(s) 541, 805
MlyI GAGTC 2 cut(s) 204, 1045
MmeI TCCRAC 3 cut(s) 102, 527, 738
Mph1103I ATGCAT 1 cut(s) 836
MseI TTAA 5 cut(s) 393, 528, 648, 972, 1023
MslI CAYNNNNRTG 2 cut(s) 204, 275
MspI CCGG 4 cut(s) 219, 710, 921, 1218
MspR9I CCNGG 4 cut(s) 37, 219, 575, 1219
MunI CAATTG 4 cut(s) 698, 851, 933, 1100
Mva1269I GAATGC 1 cut(s) 836
MvaI CCWGG 2 cut(s) 37, 575
MwoI GCNNNNNNNGC 4 cut(s) 545, 1209, 1238, 1289
NciI CCSGG 2 cut(s) 219, 1219
NcoI CCATGG 1 cut(s) 276
NdeII GATC 4 cut(s) 166, 615, 1126, 1159
NlaIII CATG 3 cut(s) 203, 280, 1292
NlaIV GGNNCC 5 cut(s) 223, 501, 672, 735, 1361
NmuCI GTSAC 3 cut(s) 5, 268, 1048
NsiI ATGCAT 1 cut(s) 836
NspV TTCGAA 1 cut(s) 792
PaeR7I CTCGAG 1 cut(s) 549
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PctI GAATGC 1 cut(s) 836
PfeI GAWTC 3 cut(s) 715, 929, 938
PkrI GCNGC 2 cut(s) 904, 1011
PleI GAGTC 2 cut(s) 204, 1045
PpsI GAGTC 2 cut(s) 204, 1045
Psp6I CCWGG 2 cut(s) 35, 573
PspGI CCWGG 2 cut(s) 35, 573
PspN4I GGNNCC 5 cut(s) 223, 501, 672, 735, 1361
PspPI GGNCC 5 cut(s) 280, 671, 725, 1105, 1281
PspXI VCTCGAGB 1 cut(s) 549
PstNI CAGNNNCTG 1 cut(s) 354
PsuI RGATCY 1 cut(s) 166
RsaI GTAC 1 cut(s) 1353
RsaNI GTAC 1 cut(s) 1352
RseI CAYNNNNRTG 2 cut(s) 204, 275
SaqAI TTAA 5 cut(s) 393, 528, 648, 972, 1023
SatI GCNGC 2 cut(s) 903, 1010
Sau3AI GATC 4 cut(s) 166, 615, 1126, 1159
Sau96I GGNCC 5 cut(s) 280, 671, 725, 1105, 1281
SchI GAGTC 2 cut(s) 204, 1045
ScrFI CCNGG 4 cut(s) 37, 219, 575, 1219
SduI GDGCHC 2 cut(s) 541, 805
SfaNI GCATC 1 cut(s) 625
Sfr274I CTCGAG 1 cut(s) 549
SfuI TTCGAA 1 cut(s) 792
SinI GGWCC 4 cut(s) 280, 671, 725, 1105
SlaI CTCGAG 1 cut(s) 549
SmiMI CAYNNNNRTG 2 cut(s) 204, 275
SmlI CTYRAG 2 cut(s) 549, 1325
SmoI CTYRAG 2 cut(s) 549, 1325
SpeI ACTAGT 1 cut(s) 556
SsiI CCGC 2 cut(s) 273, 967
SspMI CTAG 4 cut(s) 380, 557, 1085, 1373
StyD4I CCNGG 4 cut(s) 35, 217, 573, 1217
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 3 cut(s) 430, 864, 1259
TaqI TCGA 5 cut(s) 289, 342, 524, 550, 792
TatI WGTACW 1 cut(s) 1351
TfiI GAWTC 3 cut(s) 715, 929, 938
Tru1I TTAA 5 cut(s) 393, 528, 648, 972, 1023
Tru9I TTAA 5 cut(s) 393, 528, 648, 972, 1023
TscAI CASTG 3 cut(s) 735, 912, 1264
TseFI GTSAC 3 cut(s) 5, 268, 1048
TseI GCWGC 2 cut(s) 902, 1009
Tsp45I GTSAC 3 cut(s) 5, 268, 1048
TspDTI ATGAA 4 cut(s) 169, 498, 1123, 1209
TspGWI ACGGA 1 cut(s) 479
TspRI CASTG 3 cut(s) 735, 912, 1264
VpaK11BI GGWCC 4 cut(s) 280, 671, 725, 1105
XapI RAATTY 2 cut(s) 365, 482
XhoI CTCGAG 1 cut(s) 549
XspI CTAG 4 cut(s) 380, 557, 1085, 1373
Zsp2I ATGCAT 1 cut(s) 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.