Rh5AG076000

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000510
Physical Location & Seq
Forward (+)
6460702 .. 6462617
1916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG076000.1

Sequence Viewer

Length: 1347 bp
ATGAGTGACCAAACCTTGCATATTGCTATGTATCCATGGTTTGCTATGGGTCATCTGACTCCATTCCTCCACATCTCCAACAAACTCGCAGAAAGAGGCCACAAGATCTCTTTGTTTTTACCTCTCAAAACTCAATCAAAGTTGCAGCACTATAATCTCCACCCTCATCTCATTACCTTCATTCCTATCAATGTCCCTCATGTCGATGGCCTTCCTCCGGGGACTGAAACGACAGCCGACATTCCTCTCTCTTTGGGCTCTCTTCTTGCCACCGCCATGGACCTCACTCAACCCCAAATCGAACAATCTCTCCTCAAACTCAAGCCTGATTATGTGTTCTTCGATTTTAGTTATTGGTTGCCTGCATTGTTGCATCGATCAGGCAGTAATATTAAGTCAATATATTATTGCGTAATCAATCCAGCAACTATGTGGTACGGCGTGCAAAGTCTAGGCCTGCCTAGAAAAAATCAATCGGATGAAGCTGATCGTTCATTCTCATTACGAACTCACGAAGCTCGAGCTTTTGAAGCCATGATGAACATGGAATATGGCAGGGAGGTAACATTCAGCAAACGCCTATTGACCACTTTAAGCGATTGTGATGCAATTTGTTTCCAAAGTTGCAGAGAATTCGCAGGGCCATTTTGTAACTATATTGAACTCCAAATGAACAAGCCAGTAATTCTTGCAGGGCCAGTGATGCCAGATCCCCCGAGTTCACTGTTGGAAGAGAAATGGGCAACATGGCTTGGAGGGTTCAAACCCAGAACCGTAATATTCTGTGCTCTTGGAACTGAATATATTCTCACAAAGCAACAACTGCAACAACTATTATTGGGTTTTGAGCTTACTGGTTTGCCATTCTTCGCTGCCCTGAAACCGCCAACCGGAGTTGAATCAATTGAATCGGCAGTGCCAGAAGGCTTTGAAGAGCGTGTTAAAGAAAAAGGGGTTGTTTATGGGGGTTGGGTTCAGCAGCCTTTAATACTGAAGCACCCATCTATAGGTTGCTTTGTGACTCACTGCGGTCCAGGGTCTTTAAACGAGGCGTTGCTGAATGAGTGCCAATTGGTGTTTTTGCCCAATTTTATTGATCAGGTAATCAACGCGAGAATGATGAGCGATGATTTGAAAGTTGGAGTTGAAGTTGAGAAAGGGGATGAAGATGGATTGTTCAACAAGGAAGGTGTCTGCAAAGCTGTGAGAGCTGTGATGGATGAGGACAGTCAGGTTGGAAAGGAGGTGAGCACCAACCATGCCAAGTGGAGAGAGTTTATCTCCAGTAAAGGGCTTGAGAGCTCATATATTGATGGTTTTGTGCAGAAGTTGCATGACCTCCTATGA

Protein Analysis

448

Amino Acids

50.24

Weight (kDa)

5.71

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 323 - 410 8.2e-10 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1112
AciI CCGC 3 cut(s) 273, 884, 1029
AclWI GGATC 1 cut(s) 704
AcsI RAATTY 1 cut(s) 632
AcuI CTGAAG 1 cut(s) 1013
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 4 cut(s) 217, 890, 1007, 1290
AgsI TTSAA 9 cut(s) 530, 662, 763, 899, 908, 932, 1135, 1148, 1180
AjnI CCWGG 1 cut(s) 1033
AloI GAACNNNNNNTCC 2 cut(s) 294, 326
AluBI AGCT 7 cut(s) 485, 518, 524, 850, 1202, 1211, 1302
AluI AGCT 7 cut(s) 485, 518, 524, 850, 1202, 1211, 1302
Alw21I GWGCWC 3 cut(s) 790, 1253, 1304
AlwI GGATC 1 cut(s) 704
Ama87I CYCGRG 2 cut(s) 519, 715
AoxI GGCC 5 cut(s) 97, 208, 454, 641, 695
ApeKI GCWGC 3 cut(s) 145, 872, 979
ApoI RAATTY 1 cut(s) 632
Asp700I GAANNNNTTC 1 cut(s) 804
AspS9I GGNCC 4 cut(s) 280, 641, 695, 1031
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 1258
AvaI CYCGRG 2 cut(s) 519, 715
AvaII GGWCC 2 cut(s) 280, 1031
BanII GRGCYC 2 cut(s) 260, 1304
Bbv12I GWGCWC 3 cut(s) 790, 1253, 1304
BbvI GCAGC 3 cut(s) 157, 859, 991
BccI CCATC 5 cut(s) 200, 1009, 1163, 1210, 1307
BceAI ACGGC 1 cut(s) 454
BcgI CGANNNNNNTGC 4 cut(s) 587, 616, 621, 650
BciT130I CCWGG 1 cut(s) 1035
BciVI GTATCC 1 cut(s) 42
BclI TGATCA 1 cut(s) 1096
BcnI CCSGG 1 cut(s) 219
BfaI CTAG 2 cut(s) 452, 462
BfmI CTRYAG 1 cut(s) 1005
BfuI GTATCC 1 cut(s) 42
BglII AGATCT 1 cut(s) 105
BisI GCNGC 3 cut(s) 146, 873, 980
BlsI GCNGC 3 cut(s) 147, 874, 981
Bme1390I CCNGG 2 cut(s) 219, 1035
Bme18I GGWCC 2 cut(s) 280, 1031
BmeT110I CYCGRG 2 cut(s) 519, 715
BmgT120I GGNCC 4 cut(s) 280, 641, 695, 1031
BmrFI CCNGG 2 cut(s) 219, 1035
BmsI GCATC 3 cut(s) 382, 595, 693
BplI GAGNNNNNCTC 2 cut(s) 1265, 1297
BpmI CTGGAG 1 cut(s) 1267
BpuEI CTTGAG 2 cut(s) 305, 1316
BpuMI CCSGG 1 cut(s) 219
Bsa29I ATCGAT 1 cut(s) 376
BsaJI CCNNGG 4 cut(s) 35, 218, 276, 1034
BsaWI WCCGGW 1 cut(s) 890
BsaXI ACNNNNNCTCC 4 cut(s) 294, 324, 1134, 1164
Bsc4I CCNNNNNNNGG 4 cut(s) 217, 890, 1007, 1290
Bse1I ACTGG 4 cut(s) 680, 698, 859, 1284
BseBI CCWGG 1 cut(s) 1035
BseCI ATCGAT 1 cut(s) 376
BseDI CCNNGG 4 cut(s) 35, 218, 276, 1034
BseGI GGATG 3 cut(s) 484, 1168, 1225
BseLI CCNNNNNNNGG 4 cut(s) 217, 890, 1007, 1290
BseNI ACTGG 4 cut(s) 680, 698, 859, 1284
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 3 cut(s) 157, 859, 991
BsgI GTGCAG 1 cut(s) 1343
Bsh1236I CGCG 1 cut(s) 1112
BshFI GGCC 5 cut(s) 99, 210, 456, 643, 697
BshVI ATCGAT 1 cut(s) 376
BsiHKAI GWGCWC 3 cut(s) 790, 1253, 1304
BsiHKCI CYCGRG 2 cut(s) 519, 715
BsiSI CCGG 2 cut(s) 218, 891
BslFI GGGAC 2 cut(s) 179, 235
BslI CCNNNNNNNGG 4 cut(s) 217, 890, 1007, 1290
BsmFI GGGAC 2 cut(s) 179, 235
BsnI GGCC 5 cut(s) 99, 210, 456, 643, 697
BsoBI CYCGRG 2 cut(s) 519, 715
Bsp1286I GDGCHC 4 cut(s) 260, 790, 1253, 1304
Bsp143I GATC 5 cut(s) 105, 377, 487, 709, 1096
Bsp19I CCATGG 2 cut(s) 35, 276
BspACI CCGC 3 cut(s) 273, 884, 1029
BspANI GGCC 5 cut(s) 99, 210, 456, 643, 697
BspDI ATCGAT 1 cut(s) 376
BspFNI CGCG 1 cut(s) 1112
BspPI GGATC 1 cut(s) 704
BspQI GCTCTTC 1 cut(s) 927
BsrI ACTGG 4 cut(s) 680, 698, 859, 1284
BssECI CCNNGG 4 cut(s) 35, 218, 276, 1034
BssMI GATC 5 cut(s) 105, 377, 487, 709, 1096
BssT1I CCWWGG 2 cut(s) 35, 276
Bst2UI CCWGG 1 cut(s) 1035
Bst4CI ACNGT 3 cut(s) 726, 775, 1229
Bst6I CTCTTC 3 cut(s) 267, 726, 927
BstAPI GCANNNNNTGC 2 cut(s) 823, 1330
BstC8I GCNNGC 3 cut(s) 363, 443, 458
BstDSI CCRYGG 2 cut(s) 35, 276
BstF5I GGATG 3 cut(s) 484, 1168, 1225
BstFNI CGCG 1 cut(s) 1112
BstKTI GATC 5 cut(s) 108, 380, 490, 712, 1099
BstMBI GATC 5 cut(s) 105, 377, 487, 709, 1096
BstMWI GCNNNNNNNGC 5 cut(s) 530, 703, 823, 1208, 1330
BstNI CCWGG 1 cut(s) 1035
BstSCI CCNGG 2 cut(s) 217, 1033
BstSFI CTRYAG 1 cut(s) 1005
BstUI CGCG 1 cut(s) 1112
BstV1I GCAGC 3 cut(s) 157, 859, 991
BstX2I RGATCY 2 cut(s) 105, 709
BstXI CCANNNNNNTGG 1 cut(s) 277
BstYI RGATCY 2 cut(s) 105, 709
Bsu15I ATCGAT 1 cut(s) 376
BsuI GTATCC 1 cut(s) 42
BsuRI GGCC 5 cut(s) 99, 210, 456, 643, 697
BsuTUI ATCGAT 1 cut(s) 376
BtgI CCRYGG 2 cut(s) 35, 276
BtgZI GCGATG 1 cut(s) 1140
BtsCI GGATG 3 cut(s) 484, 1168, 1225
BtsI GCAGTG 2 cut(s) 921, 1024
BtsIMutI CAGTG 4 cut(s) 705, 722, 921, 1024
Cac8I GCNNGC 3 cut(s) 363, 443, 458
Cfr13I GGNCC 4 cut(s) 280, 641, 695, 1031
ClaI ATCGAT 1 cut(s) 376
Csp6I GTAC 1 cut(s) 436
CviAII CATG 8 cut(s) 36, 200, 277, 535, 544, 747, 1259, 1334
CviQI GTAC 1 cut(s) 436
DpnI GATC 5 cut(s) 107, 379, 489, 711, 1098
DpnII GATC 5 cut(s) 105, 377, 487, 709, 1096
DraI TTTAAA 1 cut(s) 1044
Eam1104I CTCTTC 3 cut(s) 267, 726, 927
EarI CTCTTC 3 cut(s) 267, 726, 927
Ecl136II GAGCTC 1 cut(s) 1302
Eco130I CCWWGG 2 cut(s) 35, 276
Eco147I AGGCCT 1 cut(s) 456
Eco24I GRGCYC 2 cut(s) 260, 1304
Eco47I GGWCC 2 cut(s) 280, 1031
Eco53kI GAGCTC 1 cut(s) 1302
Eco57I CTGAAG 1 cut(s) 1013
Eco88I CYCGRG 2 cut(s) 519, 715
EcoICRI GAGCTC 1 cut(s) 1302
EcoRI GAATTC 1 cut(s) 632
EcoRII CCWGG 1 cut(s) 1033
EcoT14I CCWWGG 2 cut(s) 35, 276
EcoT38I GRGCYC 2 cut(s) 260, 1304
ErhI CCWWGG 2 cut(s) 35, 276
FaeI CATG 8 cut(s) 39, 203, 280, 538, 547, 750, 1262, 1337
FaqI GGGAC 2 cut(s) 179, 235
FatI CATG 8 cut(s) 35, 199, 276, 534, 543, 746, 1258, 1333
FbaI TGATCA 1 cut(s) 1096
Fnu4HI GCNGC 3 cut(s) 146, 873, 980
FokI GGATG 3 cut(s) 491, 1175, 1232
FriOI GRGCYC 2 cut(s) 260, 1304
Fsp4HI GCNGC 3 cut(s) 146, 873, 980
FspBI CTAG 2 cut(s) 452, 462
GluI GCNGC 3 cut(s) 146, 873, 980
GsuI CTGGAG 1 cut(s) 1267
HaeIII GGCC 5 cut(s) 99, 210, 456, 643, 697
HapII CCGG 2 cut(s) 218, 891
Hin1II CATG 8 cut(s) 39, 203, 280, 538, 547, 750, 1262, 1337
HinfI GANTC 4 cut(s) 58, 899, 908, 1021
HpaII CCGG 2 cut(s) 218, 891
HphI GGTGA 1 cut(s) 1258
Hpy166II GTNNAC 1 cut(s) 722
Hpy188I TCNGA 2 cut(s) 57, 478
Hpy188III TCNNGA 1 cut(s) 512
Hpy8I GTNNAC 1 cut(s) 722
HpyAV CCTTC 4 cut(s) 187, 221, 917, 1181
HpyCH4III ACNGT 3 cut(s) 726, 775, 1229
HpyF10VI GCNNNNNNNGC 5 cut(s) 530, 703, 823, 1208, 1330
Hsp92II CATG 8 cut(s) 39, 203, 280, 538, 547, 750, 1262, 1337
Ksp22I TGATCA 1 cut(s) 1096
Kzo9I GATC 5 cut(s) 105, 377, 487, 709, 1096
LguI GCTCTTC 1 cut(s) 927
Lsp1109I GCAGC 3 cut(s) 157, 859, 991
LweI GCATC 3 cut(s) 382, 595, 693
MaeI CTAG 2 cut(s) 452, 462
MaeIII GTNAC 4 cut(s) 5, 562, 650, 1018
MalI GATC 5 cut(s) 107, 379, 489, 711, 1098
MboI GATC 5 cut(s) 105, 377, 487, 709, 1096
MboII GAAGA 6 cut(s) 254, 331, 743, 859, 944, 1178
MfeI CAATTG 2 cut(s) 903, 1070
MflI RGATCY 2 cut(s) 105, 709
MhlI GDGCHC 4 cut(s) 260, 790, 1253, 1304
MluCI AATT 6 cut(s) 609, 632, 684, 903, 1070, 1087
MlyI GAGTC 2 cut(s) 52, 1015
MmeI TCCRAC 4 cut(s) 102, 708, 1120, 1216
MroXI GAANNNNTTC 1 cut(s) 804
MseI TTAA 5 cut(s) 393, 593, 942, 986, 1043
MslI CAYNNNNRTG 2 cut(s) 204, 275
MspI CCGG 2 cut(s) 218, 891
MspR9I CCNGG 2 cut(s) 219, 1035
MunI CAATTG 2 cut(s) 903, 1070
MvaI CCWGG 1 cut(s) 1035
MvnI CGCG 1 cut(s) 1112
MwoI GCNNNNNNNGC 5 cut(s) 530, 703, 823, 1208, 1330
NciI CCSGG 1 cut(s) 219
NcoI CCATGG 2 cut(s) 35, 276
NdeII GATC 5 cut(s) 105, 377, 487, 709, 1096
NlaIII CATG 8 cut(s) 39, 203, 280, 538, 547, 750, 1262, 1337
NmuCI GTSAC 2 cut(s) 5, 1018
PaeR7I CTCGAG 1 cut(s) 519
PceI AGGCCT 1 cut(s) 456
PciSI GCTCTTC 1 cut(s) 927
PdmI GAANNNNTTC 1 cut(s) 804
PfeI GAWTC 2 cut(s) 899, 908
PkrI GCNGC 3 cut(s) 147, 874, 981
PleI GAGTC 2 cut(s) 52, 1015
PpsI GAGTC 2 cut(s) 52, 1015
Psp124BI GAGCTC 1 cut(s) 1304
Psp6I CCWGG 1 cut(s) 1033
PspGI CCWGG 1 cut(s) 1033
PspPI GGNCC 4 cut(s) 280, 641, 695, 1031
PspXI VCTCGAGB 1 cut(s) 519
PsuI RGATCY 2 cut(s) 105, 709
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 2 cut(s) 204, 275
SacI GAGCTC 1 cut(s) 1304
SapI GCTCTTC 1 cut(s) 927
SaqAI TTAA 5 cut(s) 393, 593, 942, 986, 1043
SatI GCNGC 3 cut(s) 146, 873, 980
Sau3AI GATC 5 cut(s) 105, 377, 487, 709, 1096
Sau96I GGNCC 4 cut(s) 280, 641, 695, 1031
SchI GAGTC 2 cut(s) 52, 1015
ScrFI CCNGG 2 cut(s) 219, 1035
SduI GDGCHC 4 cut(s) 260, 790, 1253, 1304
SfaNI GCATC 3 cut(s) 382, 595, 693
SfcI CTRYAG 1 cut(s) 1005
Sfr274I CTCGAG 1 cut(s) 519
SinI GGWCC 2 cut(s) 280, 1031
SlaI CTCGAG 1 cut(s) 519
SmiMI CAYNNNNRTG 2 cut(s) 204, 275
SmlI CTYRAG 3 cut(s) 320, 519, 1295
SmoI CTYRAG 3 cut(s) 320, 519, 1295
Sse9I AATT 6 cut(s) 609, 632, 684, 903, 1070, 1087
SseBI AGGCCT 1 cut(s) 456
SsiI CCGC 3 cut(s) 273, 884, 1029
SspI AATATT 2 cut(s) 391, 780
SspMI CTAG 2 cut(s) 452, 462
SstI GAGCTC 1 cut(s) 1304
StuI AGGCCT 1 cut(s) 456
StyD4I CCNGG 2 cut(s) 217, 1033
StyI CCWWGG 2 cut(s) 35, 276
TaaI ACNGT 3 cut(s) 726, 775, 1229
TaqI TCGA 5 cut(s) 204, 300, 342, 376, 520
TasI AATT 6 cut(s) 609, 632, 684, 903, 1070, 1087
TfiI GAWTC 2 cut(s) 899, 908
Tru1I TTAA 5 cut(s) 393, 593, 942, 986, 1043
Tru9I TTAA 5 cut(s) 393, 593, 942, 986, 1043
TscAI CASTG 4 cut(s) 705, 729, 921, 1031
TseFI GTSAC 2 cut(s) 5, 1018
TseI GCWGC 3 cut(s) 145, 872, 979
Tsp45I GTSAC 2 cut(s) 5, 1018
TspDTI ATGAA 6 cut(s) 169, 483, 495, 554, 686, 1179
TspRI CASTG 4 cut(s) 705, 729, 921, 1031
VpaK11BI GGWCC 2 cut(s) 280, 1031
XapI RAATTY 1 cut(s) 632
XcmI CCANNNNNNNNNTGG 2 cut(s) 429, 541
XhoI CTCGAG 1 cut(s) 519
XmnI GAANNNNTTC 1 cut(s) 804
XspI CTAG 2 cut(s) 452, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.