pycom05g28450

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000510
Physical Location & Seq
Forward (+)
29171953 .. 29172948
996 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g28450.1

Sequence Viewer

Length: 996 bp
ATGGGCATTAAGTCCATACATTACTGCACAATTAGTCCTGCAACTATCGGGTACCTGTCAATTCCCGAAAGGAATCCGATGGAGAAACAGCTAACAGCGGCTGACCTTATCCTGCCTCCGCCATCCTTCCCTGCATCATCGATTACCCTACGAACGTATGAAGCTCGTGGGCTTGTAGCGGTCATGTCGACAGAATTCGGCAGTGGGGTGACATTCACGCAACGCCAATTTCTTAGTTTTAGTGGATGTGATGCTATTGCTTTCAAAACTTGTAGAGAGATGGAAGGGCCTTATTGCGATTATATCGAAACCCAATATAAGAAGCCGGTGATTCTGGCAGGGCCGGTGGTGCCAGAGATCCCAACTACAAAGTTGGACGAGAAATGGGCAAAATGGCTTGAAGGGTTCGAGGCCAAAAGCATGATTTACTGCGCATTTGGAAGCGAATGCATTCTGAAAATTGATCAGTTTCAAGAATTGTTGTTGGGTTTTGAGCTCACAGGTTTGCCCTTCTTCGCGGCGCTGAAGCCGCCTATGGGAGCTGAATCGATCGAGTCAGCATTGCTGGAAGGGTTTGAGGAGAGGACACGTGGAAGAGGGGTTGTTTACGGGGGTTGGGTTCAGCAGCCATTGTTCTTGAGGCACCCTTTTGTGGGGTGCTTTGTGACTCATTGCGGCTCAGGGTCTTTGTCCGAGGCGCTAGTGAATGAGTGCCAATTGGTGCTGCTGCCGAATGTGGGTGATCAGATCATCAATGCCCGAATGATGGGTCGCGATCTGAAGGTGGGAGTCGAAGTGGAGAAGGGAGACTTAGACGGGCTGTTCACGAAGGAGGGTGTTGCCAAGGCAGTGGAAGCTGTGATGGAGGATGGCGGTGAAGTAGCTGAGGAGGTGAGGAGCAACCATGCAAAATGGAGGGAATTTCTCTCCGGCAAAGGGCTTGGTAGCTCTTATTTGGATAGTTTTGAACAAAAGCTGCATCAACTGCTTGAATGA

Protein Analysis

332

Amino Acids

36.47

Weight (kDa)

5.06

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 205 - 290 2.8e-11 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 433
Acc65I GGTACC 1 cut(s) 51
AccB1I GGYRCC 3 cut(s) 51, 349, 642
AccI GTMKAC 1 cut(s) 188
AccII CGCG 2 cut(s) 518, 774
AciI CCGC 7 cut(s) 98, 119, 179, 518, 530, 675, 873
AclWI GGATC 1 cut(s) 352
AcsI RAATTY 2 cut(s) 194, 920
AcuI CTGAAG 2 cut(s) 545, 800
AcvI CACGTG 1 cut(s) 590
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 6 cut(s) 536, 652, 653, 737, 766, 936
AflIII ACRYGT 1 cut(s) 587
AgsI TTSAA 5 cut(s) 265, 401, 473, 968, 992
AluBI AGCT 8 cut(s) 91, 164, 496, 542, 857, 884, 948, 976
AluI AGCT 8 cut(s) 91, 164, 496, 542, 857, 884, 948, 976
Alw21I GWGCWC 1 cut(s) 498
Alw26I GTCTC 1 cut(s) 801
AlwI GGATC 1 cut(s) 352
AlwNI CAGNNNCTG 1 cut(s) 101
AoxI GGCC 3 cut(s) 287, 341, 411
ApeKI GCWGC 4 cut(s) 625, 724, 727, 976
ApoI RAATTY 2 cut(s) 194, 920
ArsI GACNNNNNNTTYG 2 cut(s) 754, 786
Asp700I GAANNNNTTC 1 cut(s) 450
Asp718I GGTACC 1 cut(s) 51
AspLEI GCGC 3 cut(s) 434, 523, 700
AspS9I GGNCC 2 cut(s) 287, 341
AsuHPI GGTGA 5 cut(s) 220, 340, 752, 887, 904
BanI GGYRCC 3 cut(s) 51, 349, 642
BanII GRGCYC 1 cut(s) 498
BauI CACGAG 1 cut(s) 165
BbrPI CACGTG 1 cut(s) 590
Bbv12I GWGCWC 1 cut(s) 498
BbvCI CCTCAGC 1 cut(s) 885
BbvI GCAGC 4 cut(s) 637, 711, 714, 963
BccI CCATC 6 cut(s) 73, 130, 274, 760, 856, 863
BclI TGATCA 2 cut(s) 463, 742
BcoDI GTCTC 1 cut(s) 801
BfaI CTAG 1 cut(s) 701
BfoI RGCGCY 2 cut(s) 524, 701
BisI GCNGC 8 cut(s) 99, 519, 530, 626, 676, 725, 728, 977
BlsI GCNGC 8 cut(s) 100, 520, 531, 627, 677, 726, 729, 978
BmgT120I GGNCC 2 cut(s) 287, 341
BmiI GGNNCC 3 cut(s) 53, 351, 644
BmsI GCATC 3 cut(s) 143, 241, 988
Bpu10I CCTNAGC 2 cut(s) 679, 885
BpuEI CTTGAG 1 cut(s) 658
Bsa29I ATCGAT 2 cut(s) 140, 548
BsaAI YACGTR 1 cut(s) 590
BsaJI CCNNGG 2 cut(s) 693, 843
BsaXI ACNNNNNCTCC 2 cut(s) 780, 810
Bsc4I CCNNNNNNNGG 6 cut(s) 536, 652, 653, 737, 766, 936
Bse118I RCCGGY 2 cut(s) 325, 343
Bse3DI GCAATG 2 cut(s) 560, 670
BseCI ATCGAT 2 cut(s) 140, 548
BseDI CCNNGG 2 cut(s) 693, 843
BseGI GGATG 3 cut(s) 122, 251, 874
BseLI CCNNNNNNNGG 6 cut(s) 536, 652, 653, 737, 766, 936
BseMI GCAATG 2 cut(s) 560, 670
BseMII CTCAG 2 cut(s) 693, 876
BseRI GAGGAG 3 cut(s) 593, 902, 910
BseXI GCAGC 4 cut(s) 637, 711, 714, 963
BsgI GTGCAG 1 cut(s) 10
Bsh1236I CGCG 2 cut(s) 518, 774
Bsh1285I CGRYCG 1 cut(s) 552
BshFI GGCC 3 cut(s) 289, 343, 413
BshNI GGYRCC 3 cut(s) 51, 349, 642
BshVI ATCGAT 2 cut(s) 140, 548
BsiEI CGRYCG 1 cut(s) 552
BsiHKAI GWGCWC 1 cut(s) 498
BsiSI CCGG 3 cut(s) 326, 344, 930
BslI CCNNNNNNNGG 6 cut(s) 536, 652, 653, 737, 766, 936
BsmAI GTCTC 1 cut(s) 801
BsmI GAATGC 2 cut(s) 450, 452
BsnI GGCC 3 cut(s) 289, 343, 413
Bsp1286I GDGCHC 1 cut(s) 498
Bsp143I GATC 6 cut(s) 357, 463, 549, 742, 747, 775
Bsp68I TCGCGA 1 cut(s) 774
BspACI CCGC 7 cut(s) 98, 119, 179, 518, 530, 675, 873
BspANI GGCC 3 cut(s) 289, 343, 413
BspCNI CTCAG 2 cut(s) 692, 877
BspDI ATCGAT 2 cut(s) 140, 548
BspFNI CGCG 2 cut(s) 518, 774
BspLI GGNNCC 3 cut(s) 53, 351, 644
BspPI GGATC 1 cut(s) 352
BspT107I GGYRCC 3 cut(s) 51, 349, 642
BsrDI GCAATG 2 cut(s) 560, 670
BsrFI RCCGGY 2 cut(s) 325, 343
BssAI RCCGGY 2 cut(s) 325, 343
BssECI CCNNGG 2 cut(s) 693, 843
BssMI GATC 6 cut(s) 357, 463, 549, 742, 747, 775
BssSI CACGAG 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 843
Bst2BI CACGAG 1 cut(s) 165
Bst6I CTCTTC 1 cut(s) 589
BstAPI GCANNNNNTGC 1 cut(s) 985
BstBAI YACGTR 1 cut(s) 590
BstDEI CTNAG 4 cut(s) 233, 679, 811, 885
BstF5I GGATG 3 cut(s) 122, 251, 874
BstFNI CGCG 2 cut(s) 518, 774
BstH2I RGCGCY 2 cut(s) 524, 701
BstHHI GCGC 3 cut(s) 434, 523, 700
BstKTI GATC 6 cut(s) 360, 466, 552, 745, 750, 778
BstMAI GTCTC 1 cut(s) 801
BstMBI GATC 6 cut(s) 357, 463, 549, 742, 747, 775
BstMCI CGRYCG 1 cut(s) 552
BstMWI GCNNNNNNNGC 4 cut(s) 349, 529, 854, 985
BstUI CGCG 2 cut(s) 518, 774
BstV1I GCAGC 4 cut(s) 637, 711, 714, 963
BstX2I RGATCY 1 cut(s) 357
BstXI CCANNNNNNTGG 1 cut(s) 850
BstYI RGATCY 1 cut(s) 357
Bsu15I ATCGAT 2 cut(s) 140, 548
BsuRI GGCC 3 cut(s) 289, 343, 413
BsuTUI ATCGAT 2 cut(s) 140, 548
BtsCI GGATG 3 cut(s) 122, 251, 874
BtsI GCAGTG 2 cut(s) 208, 855
BtsIMutI CAGTG 2 cut(s) 208, 855
BtuMI TCGCGA 1 cut(s) 774
CaiI CAGNNNCTG 1 cut(s) 101
CfoI GCGC 3 cut(s) 434, 523, 700
Cfr10I RCCGGY 2 cut(s) 325, 343
Cfr13I GGNCC 2 cut(s) 287, 341
ClaI ATCGAT 2 cut(s) 140, 548
Csp6I GTAC 1 cut(s) 52
CviAII CATG 3 cut(s) 184, 421, 905
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 4 cut(s) 233, 679, 811, 885
DpnI GATC 6 cut(s) 359, 465, 551, 744, 749, 777
DpnII GATC 6 cut(s) 357, 463, 549, 742, 747, 775
Eam1104I CTCTTC 1 cut(s) 589
EarI CTCTTC 1 cut(s) 589
EciI GGCGGA 1 cut(s) 108
Ecl136II GAGCTC 1 cut(s) 496
Eco130I CCWWGG 1 cut(s) 843
Eco24I GRGCYC 1 cut(s) 498
Eco53kI GAGCTC 1 cut(s) 496
Eco57I CTGAAG 2 cut(s) 545, 800
Eco72I CACGTG 1 cut(s) 590
EcoICRI GAGCTC 1 cut(s) 496
EcoO109I RGGNCCY 1 cut(s) 287
EcoRI GAATTC 1 cut(s) 194
EcoT14I CCWWGG 1 cut(s) 843
EcoT22I ATGCAT 1 cut(s) 452
EcoT38I GRGCYC 1 cut(s) 498
ErhI CCWWGG 1 cut(s) 843
FaeI CATG 3 cut(s) 187, 424, 908
FaiI YATR 8 cut(s) 17, 159, 185, 303, 318, 422, 536, 906
FalI AAGNNNNNCTT 2 cut(s) 794, 826
FatI CATG 3 cut(s) 183, 420, 904
FbaI TGATCA 2 cut(s) 463, 742
FblI GTMKAC 1 cut(s) 188
Fnu4HI GCNGC 8 cut(s) 99, 519, 530, 626, 676, 725, 728, 977
FokI GGATG 3 cut(s) 109, 258, 881
FriOI GRGCYC 1 cut(s) 498
Fsp4HI GCNGC 8 cut(s) 99, 519, 530, 626, 676, 725, 728, 977
FspBI CTAG 1 cut(s) 701
FspI TGCGCA 1 cut(s) 433
GlaI GCGC 3 cut(s) 433, 522, 699
GluI GCNGC 8 cut(s) 99, 519, 530, 626, 676, 725, 728, 977
HaeII RGCGCY 2 cut(s) 524, 701
HaeIII GGCC 3 cut(s) 289, 343, 413
HapII CCGG 3 cut(s) 326, 344, 930
HhaI GCGC 3 cut(s) 434, 523, 700
Hin1II CATG 3 cut(s) 187, 424, 908
Hin6I GCGC 3 cut(s) 432, 521, 698
HinP1I GCGC 3 cut(s) 432, 521, 698
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HinfI GANTC 6 cut(s) 73, 331, 545, 554, 667, 789
HpaII CCGG 3 cut(s) 326, 344, 930
HphI GGTGA 5 cut(s) 220, 340, 752, 887, 904
Hpy166II GTNNAC 3 cut(s) 189, 607, 825
Hpy188I TCNGA 5 cut(s) 78, 456, 694, 747, 780
Hpy188III TCNNGA 5 cut(s) 65, 473, 637, 773, 826
Hpy8I GTNNAC 3 cut(s) 189, 607, 825
HpyAV CCTTC 8 cut(s) 136, 278, 395, 520, 563, 775, 796, 823
HpyCH4IV ACGT 2 cut(s) 155, 589
HpyCH4V TGCA 6 cut(s) 27, 41, 134, 450, 908, 979
HpyF10VI GCNNNNNNNGC 4 cut(s) 349, 529, 854, 985
HpyF3I CTNAG 4 cut(s) 233, 679, 811, 885
HpySE526I ACGT 2 cut(s) 155, 589
Hsp92II CATG 3 cut(s) 187, 424, 908
HspAI GCGC 3 cut(s) 432, 521, 698
KpnI GGTACC 1 cut(s) 55
Ksp22I TGATCA 2 cut(s) 463, 742
Kzo9I GATC 6 cut(s) 357, 463, 549, 742, 747, 775
LmnI GCTCC 2 cut(s) 539, 897
Lsp1109I GCAGC 4 cut(s) 637, 711, 714, 963
LweI GCATC 3 cut(s) 143, 241, 988
MaeI CTAG 1 cut(s) 701
MaeII ACGT 2 cut(s) 155, 589
MaeIII GTNAC 2 cut(s) 208, 664
MalI GATC 6 cut(s) 359, 465, 551, 744, 749, 777
MboI GATC 6 cut(s) 357, 463, 549, 742, 747, 775
MboII GAAGA 2 cut(s) 505, 606
MfeI CAATTG 1 cut(s) 716
MflI RGATCY 1 cut(s) 357
MhlI GDGCHC 1 cut(s) 498
MluCI AATT 8 cut(s) 30, 60, 194, 227, 459, 476, 716, 920
MlyI GAGTC 3 cut(s) 563, 661, 798
MmeI TCCRAC 1 cut(s) 354
Mph1103I ATGCAT 1 cut(s) 452
MroXI GAANNNNTTC 1 cut(s) 450
MseI TTAA 1 cut(s) 9
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 3 cut(s) 326, 344, 930
MunI CAATTG 1 cut(s) 716
Mva1269I GAATGC 2 cut(s) 450, 452
MvnI CGCG 2 cut(s) 518, 774
MwoI GCNNNNNNNGC 4 cut(s) 349, 529, 854, 985
NdeII GATC 6 cut(s) 357, 463, 549, 742, 747, 775
NlaIII CATG 3 cut(s) 187, 424, 908
NlaIV GGNNCC 3 cut(s) 53, 351, 644
NmuCI GTSAC 2 cut(s) 208, 664
NruI TCGCGA 1 cut(s) 774
NsbI TGCGCA 1 cut(s) 433
NsiI ATGCAT 1 cut(s) 452
PctI GAATGC 2 cut(s) 450, 452
PdmI GAANNNNTTC 1 cut(s) 450
PfeI GAWTC 3 cut(s) 73, 331, 545
PkrI GCNGC 8 cut(s) 100, 520, 531, 627, 677, 726, 729, 978
Ple19I CGATCG 1 cut(s) 552
PleI GAGTC 3 cut(s) 562, 661, 797
PmaCI CACGTG 1 cut(s) 590
PmlI CACGTG 1 cut(s) 590
PpsI GAGTC 3 cut(s) 562, 661, 797
Ppu21I YACGTR 1 cut(s) 590
Psp124BI GAGCTC 1 cut(s) 498
PspCI CACGTG 1 cut(s) 590
PspN4I GGNNCC 3 cut(s) 53, 351, 644
PspPI GGNCC 2 cut(s) 287, 341
PstNI CAGNNNCTG 1 cut(s) 101
PsuI RGATCY 1 cut(s) 357
PvuI CGATCG 1 cut(s) 552
RruI TCGCGA 1 cut(s) 774
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SacI GAGCTC 1 cut(s) 498
SalI GTCGAC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 8 cut(s) 99, 519, 530, 626, 676, 725, 728, 977
Sau3AI GATC 6 cut(s) 357, 463, 549, 742, 747, 775
Sau96I GGNCC 2 cut(s) 287, 341
SchI GAGTC 3 cut(s) 563, 661, 798
SduI GDGCHC 1 cut(s) 498
SfaNI GCATC 3 cut(s) 143, 241, 988
SmlI CTYRAG 1 cut(s) 637
SmoI CTYRAG 1 cut(s) 637
Sse9I AATT 8 cut(s) 30, 60, 194, 227, 459, 476, 716, 920
SsiI CCGC 7 cut(s) 98, 119, 179, 518, 530, 675, 873
SspMI CTAG 1 cut(s) 701
SstI GAGCTC 1 cut(s) 498
StyI CCWWGG 1 cut(s) 843
TaiI ACGT 2 cut(s) 158, 592
TaqI TCGA 7 cut(s) 140, 188, 306, 408, 548, 552, 792
TasI AATT 8 cut(s) 30, 60, 194, 227, 459, 476, 716, 920
TauI GCSGC 4 cut(s) 101, 521, 532, 678
TfiI GAWTC 3 cut(s) 73, 331, 545
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 2 cut(s) 208, 855
TseFI GTSAC 2 cut(s) 208, 664
TseI GCWGC 4 cut(s) 625, 724, 727, 976
Tsp45I GTSAC 2 cut(s) 208, 664
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 2 cut(s) 208, 855
XapI RAATTY 2 cut(s) 194, 920
XmiI GTMKAC 1 cut(s) 188
XmnI GAANNNNTTC 1 cut(s) 450
XspI CTAG 1 cut(s) 701
Zsp2I ATGCAT 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.