Rh4DG097500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000510
Physical Location & Seq
Forward (+)
14682762 .. 14730527
47766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG097500.1

Sequence Viewer

Length: 270 bp
ATGGGGCTTCACCCATTTACACACTCTCTTCGCCCAATGGGTTTTGGTCCAAGCATCGCGACGATGTCAGCTACAATCAGCTCCAGAAGTTATATTTTATATACTGACTTTATCAAGTTAGAAGATGACATGGTGATTTGTTTGGGTTTTGTTTCATTGAAAAGAAGAGAGTGTTATGGTAGTAATCATACTATTGATCAGGTATTATATCAAGTTTCAAGATTCATGCTTCCATCGTCAAAGGATAATCAAAGTGGGAAACTTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.03

Weight (kDa)

8.69

Isoelectric Point (pI)

57.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 59
AgsI TTSAA 2 cut(s) 160, 219
AluBI AGCT 2 cut(s) 71, 81
AluI AGCT 2 cut(s) 71, 81
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 145
AvaII GGWCC 1 cut(s) 47
BccI CCATC 1 cut(s) 241
BclI TGATCA 1 cut(s) 196
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmsI GCATC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 67
Bsh1236I CGCG 1 cut(s) 59
Bsp143I GATC 1 cut(s) 196
Bsp68I TCGCGA 1 cut(s) 59
BspFNI CGCG 1 cut(s) 59
BssMI GATC 1 cut(s) 196
Bst6I CTCTTC 2 cut(s) 33, 160
BstDEI CTNAG 1 cut(s) 267
BstFNI CGCG 1 cut(s) 59
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstUI CGCG 1 cut(s) 59
BtgZI GCGATG 1 cut(s) 40
BtuMI TCGCGA 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 47
CviAII CATG 2 cut(s) 130, 226
CviJI RGCY 3 cut(s) 7, 71, 81
CviKI_1 RGCY 3 cut(s) 7, 71, 81
DdeI CTNAG 1 cut(s) 267
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eam1104I CTCTTC 2 cut(s) 33, 160
EarI CTCTTC 2 cut(s) 33, 160
Eco47I GGWCC 1 cut(s) 47
FaeI CATG 2 cut(s) 133, 229
FaiI YATR 8 cut(s) 93, 100, 102, 131, 177, 189, 208, 227
FatI CATG 2 cut(s) 129, 225
FbaI TGATCA 1 cut(s) 196
GsuI CTGGAG 1 cut(s) 67
Hin1II CATG 2 cut(s) 133, 229
HinfI GANTC 1 cut(s) 222
HphI GGTGA 1 cut(s) 145
Hpy188III TCNNGA 3 cut(s) 58, 84, 219
Hpy99I CGWCG 1 cut(s) 64
HpyF3I CTNAG 1 cut(s) 267
Hsp92II CATG 2 cut(s) 133, 229
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 2 cut(s) 97, 185
LweI GCATC 1 cut(s) 63
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 3 cut(s) 20, 134, 177
MvnI CGCG 1 cut(s) 59
NdeII GATC 1 cut(s) 196
NlaIII CATG 2 cut(s) 133, 229
NruI TCGCGA 1 cut(s) 59
PfeI GAWTC 1 cut(s) 222
PflFI GACNNNGTC 1 cut(s) 64
PspPI GGNCC 1 cut(s) 47
PsyI GACNNNGTC 1 cut(s) 64
RruI TCGCGA 1 cut(s) 59
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 1 cut(s) 47
SetI ASST 3 cut(s) 73, 83, 204
SfaNI GCATC 1 cut(s) 63
SgeI CNNG 9 cut(s) 63, 70, 96, 127, 142, 212, 224, 231, 238
SinI GGWCC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 222
TspDTI ATGAA 2 cut(s) 144, 214
Tth111I GACNNNGTC 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.