Rw5G006980

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000510
Physical Location & Seq
Forward (+)
7203544 .. 7204879
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G006980.1

Sequence Viewer

Length: 678 bp
ATGAGTGACGATCAAACCTTGCATATTGCTATGTATCCATGGTTTGCTATGGGTCATTTGACTGCATTCCTCCACATCTCCAACAAACTCGCAGAAAGGGGCCACAAGATCTCCTTCTTTTTACCTCTCAAAACTCAATCCAAGTTGCAGCACTATAATCTCCACCCTCATCTCATTACCTTCATTCCCCTCAATGTCCCTCACGTCGATGGCCTCCCTCCGGGGACTGAAACGACAGCTGACATTCCTCTCTCTTTGGGCTCTCTTCTTGCAACCGCCATGGACCTCACTCGACCCCAAATCGAACAATCTCTCCTCAAACTCAAGCCTGATTTTGTGTTCTTCGATTTTAGTTACTGGTTGCCTGCAATAATTCACCCATCTCTGGGTTGCTTTGTGACTCACTGCGGTTCGGGGTCTTTAAATGAGGCGTTAGTGAATGAGTGCCAATTGGTGCTTCTCCCGCACGTGGGAGATCATGTTATCAACGCGAGAATCTTGAGTGGGGATTTGAAGGTGGGAGTTGAAGTTGAAAAAGGAGATGAAGATGGATTGTTCACCAAGGAAGGTGTTTGCAAAGCTGTGAAAGCAGTGATGGATGGAGACAGTGAGGTGGGAAAGGAGGTGAGGACCAACCATGCTAAGTGGAGGGAGTTCTTCTCCAATAAAGGGCTTTAG

Protein Analysis

225

Amino Acids

24.95

Weight (kDa)

6.08

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 120 - 203 3.7e-07 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 491
AciI CCGC 3 cut(s) 276, 408, 464
AcvI CACGTG 1 cut(s) 469
AfiI CCNNNNNNNGG 6 cut(s) 220, 385, 386, 469, 470, 669
AgsI TTSAA 3 cut(s) 514, 527, 533
AjiI CACGTC 1 cut(s) 205
AjuI GAANNNNNNNTTGG 2 cut(s) 441, 473
AloI GAACNNNNNNTCC 2 cut(s) 297, 329
AluBI AGCT 2 cut(s) 239, 581
AluI AGCT 2 cut(s) 239, 581
Alw26I GTCTC 1 cut(s) 597
AoxI GGCC 2 cut(s) 100, 211
ApeKI GCWGC 1 cut(s) 148
AspS9I GGNCC 3 cut(s) 100, 283, 630
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 3 cut(s) 368, 550, 637
AvaII GGWCC 2 cut(s) 283, 630
BanII GRGCYC 1 cut(s) 263
BbrPI CACGTG 1 cut(s) 469
BbvI GCAGC 1 cut(s) 160
BccI CCATC 5 cut(s) 203, 388, 542, 589, 593
BciVI GTATCC 1 cut(s) 45
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 597
BfuI GTATCC 1 cut(s) 45
BglII AGATCT 1 cut(s) 108
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 222
Bme18I GGWCC 2 cut(s) 283, 630
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 3 cut(s) 100, 283, 630
BmiI GGNNCC 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 222
BplI GAGNNNNNCTC 2 cut(s) 644, 676
BpuEI CTTGAG 2 cut(s) 308, 520
BpuMI CCSGG 1 cut(s) 222
BsaAI YACGTR 1 cut(s) 469
BsaJI CCNNGG 4 cut(s) 38, 221, 279, 561
BsaXI ACNNNNNCTCC 8 cut(s) 95, 125, 297, 327, 465, 495, 513, 543
Bsc4I CCNNNNNNNGG 6 cut(s) 220, 385, 386, 469, 470, 669
Bse1I ACTGG 1 cut(s) 362
BseDI CCNNGG 4 cut(s) 38, 221, 279, 561
BseGI GGATG 1 cut(s) 604
BseLI CCNNNNNNNGG 6 cut(s) 220, 385, 386, 469, 470, 669
BseNI ACTGG 1 cut(s) 362
BseRI GAGGAG 1 cut(s) 305
BseXI GCAGC 1 cut(s) 160
Bsh1236I CGCG 1 cut(s) 491
BshFI GGCC 2 cut(s) 102, 213
BsiSI CCGG 1 cut(s) 221
BslFI GGGAC 2 cut(s) 182, 238
BslI CCNNNNNNNGG 6 cut(s) 220, 385, 386, 469, 470, 669
BsmAI GTCTC 1 cut(s) 597
BsmFI GGGAC 2 cut(s) 182, 238
BsmI GAATGC 1 cut(s) 65
BsnI GGCC 2 cut(s) 102, 213
Bsp1286I GDGCHC 1 cut(s) 263
Bsp143I GATC 3 cut(s) 10, 108, 475
Bsp19I CCATGG 2 cut(s) 38, 279
BspACI CCGC 3 cut(s) 276, 408, 464
BspANI GGCC 2 cut(s) 102, 213
BspFNI CGCG 1 cut(s) 491
BspLI GGNNCC 1 cut(s) 101
BsrI ACTGG 1 cut(s) 362
BssECI CCNNGG 4 cut(s) 38, 221, 279, 561
BssMI GATC 3 cut(s) 10, 108, 475
BssT1I CCWWGG 3 cut(s) 38, 279, 561
Bst4CI ACNGT 1 cut(s) 608
Bst6I CTCTTC 1 cut(s) 270
BstBAI YACGTR 1 cut(s) 469
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 1 cut(s) 642
BstDSI CCRYGG 2 cut(s) 38, 279
BstF5I GGATG 1 cut(s) 604
BstFNI CGCG 1 cut(s) 491
BstKTI GATC 3 cut(s) 13, 111, 478
BstMAI GTCTC 1 cut(s) 597
BstMBI GATC 3 cut(s) 10, 108, 475
BstMWI GCNNNNNNNGC 2 cut(s) 463, 587
BstSCI CCNGG 1 cut(s) 220
BstUI CGCG 1 cut(s) 491
BstV1I GCAGC 1 cut(s) 160
BstX2I RGATCY 1 cut(s) 108
BstYI RGATCY 1 cut(s) 108
BsuI GTATCC 1 cut(s) 45
BsuRI GGCC 2 cut(s) 102, 213
BtgI CCRYGG 2 cut(s) 38, 279
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 1 cut(s) 604
BtsI GCAGTG 2 cut(s) 403, 597
BtsIMutI CAGTG 3 cut(s) 403, 597, 613
Cac8I GCNNGC 1 cut(s) 366
Cfr13I GGNCC 3 cut(s) 100, 283, 630
CviAII CATG 4 cut(s) 39, 280, 479, 638
CviJI RGCY 7 cut(s) 102, 213, 239, 261, 328, 581, 673
CviKI_1 RGCY 7 cut(s) 102, 213, 239, 261, 328, 581, 673
DdeI CTNAG 1 cut(s) 642
DpnI GATC 3 cut(s) 12, 110, 477
DpnII GATC 3 cut(s) 10, 108, 475
DraI TTTAAA 1 cut(s) 423
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Eco130I CCWWGG 3 cut(s) 38, 279, 561
Eco24I GRGCYC 1 cut(s) 263
Eco47I GGWCC 2 cut(s) 283, 630
Eco72I CACGTG 1 cut(s) 469
EcoT14I CCWWGG 3 cut(s) 38, 279, 561
EcoT38I GRGCYC 1 cut(s) 263
ErhI CCWWGG 3 cut(s) 38, 279, 561
FaeI CATG 4 cut(s) 42, 283, 482, 641
FaiI YATR 8 cut(s) 24, 32, 40, 50, 156, 281, 480, 639
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FaqI GGGAC 2 cut(s) 182, 238
FatI CATG 4 cut(s) 38, 279, 478, 637
FauI CCCGC 1 cut(s) 471
Fnu4HI GCNGC 1 cut(s) 149
FokI GGATG 1 cut(s) 611
FriOI GRGCYC 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 149
GluI GCNGC 1 cut(s) 149
HaeIII GGCC 2 cut(s) 102, 213
HapII CCGG 1 cut(s) 221
Hin1II CATG 4 cut(s) 42, 283, 482, 641
HinfI GANTC 2 cut(s) 400, 495
HpaII CCGG 1 cut(s) 221
HphI GGTGA 3 cut(s) 368, 550, 637
Hpy166II GTNNAC 1 cut(s) 558
Hpy188III TCNNGA 1 cut(s) 499
Hpy8I GTNNAC 1 cut(s) 558
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 4 cut(s) 124, 190, 508, 560
HpyCH4III ACNGT 1 cut(s) 608
HpyCH4IV ACGT 2 cut(s) 204, 468
HpyCH4V TGCA 6 cut(s) 22, 65, 148, 272, 368, 576
HpyF10VI GCNNNNNNNGC 2 cut(s) 463, 587
HpyF3I CTNAG 1 cut(s) 642
HpySE526I ACGT 2 cut(s) 204, 468
Hsp92II CATG 4 cut(s) 42, 283, 482, 641
Kzo9I GATC 3 cut(s) 10, 108, 475
LpnPI CCDG 5 cut(s) 234, 342, 343, 371, 378
Lsp1109I GCAGC 1 cut(s) 160
MaeII ACGT 2 cut(s) 204, 468
MaeIII GTNAC 3 cut(s) 5, 353, 397
MalI GATC 3 cut(s) 12, 110, 477
MboI GATC 3 cut(s) 10, 108, 475
MboII GAAGA 4 cut(s) 257, 334, 557, 649
MfeI CAATTG 1 cut(s) 449
MflI RGATCY 1 cut(s) 108
MhlI GDGCHC 1 cut(s) 263
MluCI AATT 2 cut(s) 372, 449
MlyI GAGTC 1 cut(s) 394
MmeI TCCRAC 1 cut(s) 105
MseI TTAA 1 cut(s) 422
MslI CAYNNNNRTG 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 1 cut(s) 222
MunI CAATTG 1 cut(s) 449
Mva1269I GAATGC 1 cut(s) 65
MvnI CGCG 1 cut(s) 491
MwoI GCNNNNNNNGC 2 cut(s) 463, 587
NciI CCSGG 1 cut(s) 222
NcoI CCATGG 2 cut(s) 38, 279
NdeII GATC 3 cut(s) 10, 108, 475
NlaIII CATG 4 cut(s) 42, 283, 482, 641
NlaIV GGNNCC 1 cut(s) 101
NmuCI GTSAC 2 cut(s) 5, 397
PctI GAATGC 1 cut(s) 65
PfeI GAWTC 1 cut(s) 495
PkrI GCNGC 1 cut(s) 150
PleI GAGTC 1 cut(s) 394
PmaCI CACGTG 1 cut(s) 469
PmlI CACGTG 1 cut(s) 469
PpsI GAGTC 1 cut(s) 394
Ppu21I YACGTR 1 cut(s) 469
PspCI CACGTG 1 cut(s) 469
PspN4I GGNNCC 1 cut(s) 101
PspPI GGNCC 3 cut(s) 100, 283, 630
PsuI RGATCY 1 cut(s) 108
PvuII CAGCTG 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 207
SaqAI TTAA 1 cut(s) 422
SatI GCNGC 1 cut(s) 149
Sau3AI GATC 3 cut(s) 10, 108, 475
Sau96I GGNCC 3 cut(s) 100, 283, 630
SchI GAGTC 1 cut(s) 394
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 1 cut(s) 263
SinI GGWCC 2 cut(s) 283, 630
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 2 cut(s) 323, 499
SmoI CTYRAG 2 cut(s) 323, 499
Sse9I AATT 2 cut(s) 372, 449
SsiI CCGC 3 cut(s) 276, 408, 464
StyD4I CCNGG 1 cut(s) 220
StyI CCWWGG 3 cut(s) 38, 279, 561
TaaI ACNGT 1 cut(s) 608
TaiI ACGT 2 cut(s) 207, 471
TaqI TCGA 4 cut(s) 207, 292, 303, 345
TasI AATT 2 cut(s) 372, 449
TfiI GAWTC 1 cut(s) 495
Tru1I TTAA 1 cut(s) 422
Tru9I TTAA 1 cut(s) 422
TscAI CASTG 3 cut(s) 410, 597, 613
TseFI GTSAC 2 cut(s) 5, 397
TseI GCWGC 1 cut(s) 148
Tsp45I GTSAC 2 cut(s) 5, 397
TspDTI ATGAA 2 cut(s) 172, 558
TspRI CASTG 3 cut(s) 410, 597, 613
VpaK11BI GGWCC 2 cut(s) 283, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.