Rroxscaffold_1G00066570

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000510
Physical Location & Seq
Reverse (-)
88102035 .. 88103747
1713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00066570.1

Sequence Viewer

Length: 1350 bp
ATGAGTGACGATCAAACCTTGCATATTGCTATGTATCCATGGTTTGCTATGGGTCATCTGACTCCATTCCTCCACATCTCCAACAAACTCGCAGAAAGAGGCCACAAGATCTCTTTGTTTTTACCTCTCAAAACTCAATCCAAGTTGCAGCACTATAATCTCCACCCTCATCTCATTACCTTCATTCCTATCAATGTCCCTCATGTCGATGGCCTTCCTCCGGGGACTGAAACCACAGCCGACATTCCTCTCTCTTTGGGCTCTCTTCTTGCCACCGCCATGGACCTCACTCAACCCCAAATCGAACAATCTCTCCTCAAACTCAAGCCTGATTATGTGTTCTTCGATTTTAGTTATTGGTTGCCTGCATTGTTGCATCGATCAGGCAGTAATATTAAGTCAATATATTACTGCGTAATCAATCCTGCAACTATGTGGTACGGCGTGCAAAGTCTAGGCCTGCCTAGAAAAAATCAATTGGATGAAGCTGATCGTTCATTCTCATTACGAACTCACGAAGCTCGAGCTTTTGAAGCCATGATGAACATGGAATATGGCAGGGAGGTAACATTCAGCAAACGCCTATTGACCACTTTAAGCGATTGTGATGCAATTTGTTTCCAAAGTTGCAGAGAATTCGCAGGGCCATTTTGTAACTATATTGAACTCCAAATGAACAAGCCAGTAATTCTTGCAGGGCCAGTGATGCCAGATCCCCCGAGTTCACAGTTGGAAGAGAAATGGGCAACATGGCTTGGAGGGTTCAAACCCAGAACCGTGATATTTTGTGCTCTTGGAACTGAATATATTCTCTCAAAGCAACAACTGCAACAACTATTATTGGGTTTTGAGCTTACTGGTTTGCCATTCTTCGCTGCCCTGAAACCGCCAACCGGAGTTGAATCAATTGAATCGGCAGTGCCAGAAGGCTTTGAAGAGCGTGTTAAAGAAAAAGGGGTTGTTTATGGGGGTTGGGTTCAGCAGCCTTTAATACTGAAGCACCCATCTATAGGTTGCTTTGTGACTCACTGTGGTTCTGGGTCTTTAAACGAGGCGTTGCTGAATGAGTGCCAATTGGTGTTTTTGCCAAATATTATTGATCAGGTAATCAACGCGAGAATGATGAGTGGTGATTTGAAAGTTGGAGTTGAAGTTGAGAAAGGGGATGAAGATGGATTGTTCACCAAGGAAGGTGTTTGCAAAGCTGTGAGAGCTGTGATGGATGAGGACAGTCAGGTTGGAAAGGAGGTGAGCACCAACCATGCCAAGTGGAGAGAGTTTATCTCCAGTAAAGGGCTTGAGAGCTCATATTTTGATGGTTTTGTGCAGAAGTTGCATGACCTCCTATGA

Protein Analysis

449

Amino Acids

50.31

Weight (kDa)

5.71

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 324 - 411 9.7e-10 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1115
AciI CCGC 2 cut(s) 276, 887
AclWI GGATC 1 cut(s) 707
AcsI RAATTY 1 cut(s) 635
AcuI CTGAAG 1 cut(s) 1016
AfaI GTAC 1 cut(s) 440
AfiI CCNNNNNNNGG 4 cut(s) 220, 893, 1010, 1293
AgsI TTSAA 8 cut(s) 533, 665, 766, 902, 911, 935, 1138, 1151
AloI GAACNNNNNNTCC 2 cut(s) 297, 329
AluBI AGCT 7 cut(s) 488, 521, 527, 853, 1205, 1214, 1305
AluI AGCT 7 cut(s) 488, 521, 527, 853, 1205, 1214, 1305
Alw21I GWGCWC 3 cut(s) 793, 1256, 1307
AlwI GGATC 1 cut(s) 707
Ama87I CYCGRG 2 cut(s) 522, 718
AoxI GGCC 5 cut(s) 100, 211, 457, 644, 698
ApeKI GCWGC 3 cut(s) 148, 875, 982
ApoI RAATTY 1 cut(s) 635
Asp700I GAANNNNTTC 1 cut(s) 807
AspS9I GGNCC 3 cut(s) 283, 644, 698
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 3 cut(s) 1142, 1174, 1261
AvaI CYCGRG 2 cut(s) 522, 718
AvaII GGWCC 1 cut(s) 283
BanII GRGCYC 2 cut(s) 263, 1307
Bbv12I GWGCWC 3 cut(s) 793, 1256, 1307
BbvI GCAGC 3 cut(s) 160, 862, 994
BccI CCATC 5 cut(s) 203, 1012, 1166, 1213, 1310
BceAI ACGGC 1 cut(s) 457
BcgI CGANNNNNNTGC 4 cut(s) 590, 619, 624, 653
BciVI GTATCC 1 cut(s) 45
BclI TGATCA 1 cut(s) 1099
BcnI CCSGG 1 cut(s) 222
BfaI CTAG 2 cut(s) 455, 465
BfmI CTRYAG 1 cut(s) 1008
BfuI GTATCC 1 cut(s) 45
BglII AGATCT 1 cut(s) 108
BisI GCNGC 3 cut(s) 149, 876, 983
BlsI GCNGC 3 cut(s) 150, 877, 984
Bme1390I CCNGG 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 283
BmeT110I CYCGRG 2 cut(s) 522, 718
BmgT120I GGNCC 3 cut(s) 283, 644, 698
BmrFI CCNGG 1 cut(s) 222
BmsI GCATC 3 cut(s) 385, 598, 696
BplI GAGNNNNNCTC 2 cut(s) 1268, 1300
BpmI CTGGAG 1 cut(s) 1270
BpuEI CTTGAG 2 cut(s) 308, 1319
BpuMI CCSGG 1 cut(s) 222
Bsa29I ATCGAT 1 cut(s) 379
BsaJI CCNNGG 4 cut(s) 38, 221, 279, 1185
BsaWI WCCGGW 1 cut(s) 893
BsaXI ACNNNNNCTCC 4 cut(s) 297, 327, 1137, 1167
Bsc4I CCNNNNNNNGG 4 cut(s) 220, 893, 1010, 1293
Bse1I ACTGG 4 cut(s) 683, 701, 862, 1287
BseCI ATCGAT 1 cut(s) 379
BseDI CCNNGG 4 cut(s) 38, 221, 279, 1185
BseGI GGATG 3 cut(s) 487, 1171, 1228
BseLI CCNNNNNNNGG 4 cut(s) 220, 893, 1010, 1293
BseNI ACTGG 4 cut(s) 683, 701, 862, 1287
BseRI GAGGAG 1 cut(s) 305
BseXI GCAGC 3 cut(s) 160, 862, 994
BsgI GTGCAG 1 cut(s) 1346
Bsh1236I CGCG 1 cut(s) 1115
BshFI GGCC 5 cut(s) 102, 213, 459, 646, 700
BshVI ATCGAT 1 cut(s) 379
BsiHKAI GWGCWC 3 cut(s) 793, 1256, 1307
BsiHKCI CYCGRG 2 cut(s) 522, 718
BsiSI CCGG 2 cut(s) 221, 894
BslFI GGGAC 2 cut(s) 182, 238
BslI CCNNNNNNNGG 4 cut(s) 220, 893, 1010, 1293
BsmFI GGGAC 2 cut(s) 182, 238
BsnI GGCC 5 cut(s) 102, 213, 459, 646, 700
BsoBI CYCGRG 2 cut(s) 522, 718
Bsp1286I GDGCHC 4 cut(s) 263, 793, 1256, 1307
Bsp143I GATC 6 cut(s) 10, 108, 380, 490, 712, 1099
Bsp19I CCATGG 2 cut(s) 38, 279
BspACI CCGC 2 cut(s) 276, 887
BspANI GGCC 5 cut(s) 102, 213, 459, 646, 700
BspDI ATCGAT 1 cut(s) 379
BspFNI CGCG 1 cut(s) 1115
BspPI GGATC 1 cut(s) 707
BspQI GCTCTTC 1 cut(s) 930
BsrI ACTGG 4 cut(s) 683, 701, 862, 1287
BssECI CCNNGG 4 cut(s) 38, 221, 279, 1185
BssMI GATC 6 cut(s) 10, 108, 380, 490, 712, 1099
BssT1I CCWWGG 3 cut(s) 38, 279, 1185
Bst4CI ACNGT 4 cut(s) 729, 778, 1031, 1232
Bst6I CTCTTC 3 cut(s) 270, 729, 930
BstAPI GCANNNNNTGC 2 cut(s) 826, 1333
BstC8I GCNNGC 3 cut(s) 366, 446, 461
BstDSI CCRYGG 2 cut(s) 38, 279
BstF5I GGATG 3 cut(s) 487, 1171, 1228
BstFNI CGCG 1 cut(s) 1115
BstKTI GATC 6 cut(s) 13, 111, 383, 493, 715, 1102
BstMBI GATC 6 cut(s) 10, 108, 380, 490, 712, 1099
BstMWI GCNNNNNNNGC 5 cut(s) 533, 706, 826, 1211, 1333
BstSCI CCNGG 1 cut(s) 220
BstSFI CTRYAG 1 cut(s) 1008
BstUI CGCG 1 cut(s) 1115
BstV1I GCAGC 3 cut(s) 160, 862, 994
BstX2I RGATCY 2 cut(s) 108, 712
BstXI CCANNNNNNTGG 1 cut(s) 280
BstYI RGATCY 2 cut(s) 108, 712
Bsu15I ATCGAT 1 cut(s) 379
BsuI GTATCC 1 cut(s) 45
BsuRI GGCC 5 cut(s) 102, 213, 459, 646, 700
BsuTUI ATCGAT 1 cut(s) 379
BtgI CCRYGG 2 cut(s) 38, 279
BtsCI GGATG 3 cut(s) 487, 1171, 1228
BtsI GCAGTG 1 cut(s) 924
BtsIMutI CAGTG 3 cut(s) 708, 924, 1027
Cac8I GCNNGC 3 cut(s) 366, 446, 461
Cfr13I GGNCC 3 cut(s) 283, 644, 698
ClaI ATCGAT 1 cut(s) 379
Csp6I GTAC 1 cut(s) 439
CviAII CATG 8 cut(s) 39, 203, 280, 538, 547, 750, 1262, 1337
CviQI GTAC 1 cut(s) 439
DpnI GATC 6 cut(s) 12, 110, 382, 492, 714, 1101
DpnII GATC 6 cut(s) 10, 108, 380, 490, 712, 1099
DraI TTTAAA 1 cut(s) 1047
Eam1104I CTCTTC 3 cut(s) 270, 729, 930
EarI CTCTTC 3 cut(s) 270, 729, 930
Ecl136II GAGCTC 1 cut(s) 1305
Eco130I CCWWGG 3 cut(s) 38, 279, 1185
Eco147I AGGCCT 1 cut(s) 459
Eco24I GRGCYC 2 cut(s) 263, 1307
Eco47I GGWCC 1 cut(s) 283
Eco53kI GAGCTC 1 cut(s) 1305
Eco57I CTGAAG 1 cut(s) 1016
Eco88I CYCGRG 2 cut(s) 522, 718
EcoICRI GAGCTC 1 cut(s) 1305
EcoRI GAATTC 1 cut(s) 635
EcoT14I CCWWGG 3 cut(s) 38, 279, 1185
EcoT38I GRGCYC 2 cut(s) 263, 1307
ErhI CCWWGG 3 cut(s) 38, 279, 1185
FaeI CATG 8 cut(s) 42, 206, 283, 541, 550, 753, 1265, 1340
FaqI GGGAC 2 cut(s) 182, 238
FatI CATG 8 cut(s) 38, 202, 279, 537, 546, 749, 1261, 1336
FbaI TGATCA 1 cut(s) 1099
Fnu4HI GCNGC 3 cut(s) 149, 876, 983
FokI GGATG 3 cut(s) 494, 1178, 1235
FriOI GRGCYC 2 cut(s) 263, 1307
Fsp4HI GCNGC 3 cut(s) 149, 876, 983
FspBI CTAG 2 cut(s) 455, 465
GluI GCNGC 3 cut(s) 149, 876, 983
GsuI CTGGAG 1 cut(s) 1270
HaeIII GGCC 5 cut(s) 102, 213, 459, 646, 700
HapII CCGG 2 cut(s) 221, 894
Hin1II CATG 8 cut(s) 42, 206, 283, 541, 550, 753, 1265, 1340
HinfI GANTC 4 cut(s) 61, 902, 911, 1024
HpaII CCGG 2 cut(s) 221, 894
HphI GGTGA 3 cut(s) 1142, 1174, 1261
Hpy166II GTNNAC 2 cut(s) 725, 1182
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 1 cut(s) 515
Hpy8I GTNNAC 2 cut(s) 725, 1182
HpyAV CCTTC 4 cut(s) 190, 224, 920, 1184
HpyCH4III ACNGT 4 cut(s) 729, 778, 1031, 1232
HpyF10VI GCNNNNNNNGC 5 cut(s) 533, 706, 826, 1211, 1333
Hsp92II CATG 8 cut(s) 42, 206, 283, 541, 550, 753, 1265, 1340
Ksp22I TGATCA 1 cut(s) 1099
Kzo9I GATC 6 cut(s) 10, 108, 380, 490, 712, 1099
LguI GCTCTTC 1 cut(s) 930
Lsp1109I GCAGC 3 cut(s) 160, 862, 994
LweI GCATC 3 cut(s) 385, 598, 696
MaeI CTAG 2 cut(s) 455, 465
MaeIII GTNAC 4 cut(s) 5, 565, 653, 1021
MalI GATC 6 cut(s) 12, 110, 382, 492, 714, 1101
MboI GATC 6 cut(s) 10, 108, 380, 490, 712, 1099
MboII GAAGA 6 cut(s) 257, 334, 746, 862, 947, 1181
MfeI CAATTG 3 cut(s) 476, 906, 1073
MflI RGATCY 2 cut(s) 108, 712
MhlI GDGCHC 4 cut(s) 263, 793, 1256, 1307
MluCI AATT 6 cut(s) 476, 612, 635, 687, 906, 1073
MlyI GAGTC 2 cut(s) 55, 1018
MmeI TCCRAC 4 cut(s) 105, 711, 1123, 1219
MroXI GAANNNNTTC 1 cut(s) 807
MseI TTAA 5 cut(s) 396, 596, 945, 989, 1046
MslI CAYNNNNRTG 2 cut(s) 207, 278
MspI CCGG 2 cut(s) 221, 894
MspR9I CCNGG 1 cut(s) 222
MunI CAATTG 3 cut(s) 476, 906, 1073
MvnI CGCG 1 cut(s) 1115
MwoI GCNNNNNNNGC 5 cut(s) 533, 706, 826, 1211, 1333
NciI CCSGG 1 cut(s) 222
NcoI CCATGG 2 cut(s) 38, 279
NdeII GATC 6 cut(s) 10, 108, 380, 490, 712, 1099
NlaIII CATG 8 cut(s) 42, 206, 283, 541, 550, 753, 1265, 1340
NmuCI GTSAC 2 cut(s) 5, 1021
PaeR7I CTCGAG 1 cut(s) 522
PceI AGGCCT 1 cut(s) 459
PciSI GCTCTTC 1 cut(s) 930
PdmI GAANNNNTTC 1 cut(s) 807
PfeI GAWTC 2 cut(s) 902, 911
PkrI GCNGC 3 cut(s) 150, 877, 984
PleI GAGTC 2 cut(s) 55, 1018
PpsI GAGTC 2 cut(s) 55, 1018
Psp124BI GAGCTC 1 cut(s) 1307
PspPI GGNCC 3 cut(s) 283, 644, 698
PspXI VCTCGAGB 1 cut(s) 522
PsuI RGATCY 2 cut(s) 108, 712
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
RseI CAYNNNNRTG 2 cut(s) 207, 278
SacI GAGCTC 1 cut(s) 1307
SapI GCTCTTC 1 cut(s) 930
SaqAI TTAA 5 cut(s) 396, 596, 945, 989, 1046
SatI GCNGC 3 cut(s) 149, 876, 983
Sau3AI GATC 6 cut(s) 10, 108, 380, 490, 712, 1099
Sau96I GGNCC 3 cut(s) 283, 644, 698
SchI GAGTC 2 cut(s) 55, 1018
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 4 cut(s) 263, 793, 1256, 1307
SfaNI GCATC 3 cut(s) 385, 598, 696
SfcI CTRYAG 1 cut(s) 1008
Sfr274I CTCGAG 1 cut(s) 522
SinI GGWCC 1 cut(s) 283
SlaI CTCGAG 1 cut(s) 522
SmiMI CAYNNNNRTG 2 cut(s) 207, 278
SmlI CTYRAG 3 cut(s) 323, 522, 1298
SmoI CTYRAG 3 cut(s) 323, 522, 1298
Sse9I AATT 6 cut(s) 476, 612, 635, 687, 906, 1073
SseBI AGGCCT 1 cut(s) 459
SsiI CCGC 2 cut(s) 276, 887
SspI AATATT 2 cut(s) 394, 1093
SspMI CTAG 2 cut(s) 455, 465
SstI GAGCTC 1 cut(s) 1307
StuI AGGCCT 1 cut(s) 459
StyD4I CCNGG 1 cut(s) 220
StyI CCWWGG 3 cut(s) 38, 279, 1185
TaaI ACNGT 4 cut(s) 729, 778, 1031, 1232
TaqI TCGA 5 cut(s) 207, 303, 345, 379, 523
TasI AATT 6 cut(s) 476, 612, 635, 687, 906, 1073
TfiI GAWTC 2 cut(s) 902, 911
Tru1I TTAA 5 cut(s) 396, 596, 945, 989, 1046
Tru9I TTAA 5 cut(s) 396, 596, 945, 989, 1046
TscAI CASTG 3 cut(s) 708, 924, 1034
TseFI GTSAC 2 cut(s) 5, 1021
TseI GCWGC 3 cut(s) 148, 875, 982
Tsp45I GTSAC 2 cut(s) 5, 1021
TspDTI ATGAA 6 cut(s) 172, 486, 498, 557, 689, 1182
TspRI CASTG 3 cut(s) 708, 924, 1034
VpaK11BI GGWCC 1 cut(s) 283
XapI RAATTY 1 cut(s) 635
XcmI CCANNNNNNNNNTGG 1 cut(s) 544
XhoI CTCGAG 1 cut(s) 522
XmnI GAANNNNTTC 1 cut(s) 807
XspI CTAG 2 cut(s) 455, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.