Rorug04G0444300

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000510
Physical Location & Seq
Reverse (-)
60072257 .. 60073009
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0444300.1

Sequence Viewer

Length: 669 bp
ATGTCCAAGAAGACCCAAGGCCGCAAGAAAATTGAGATCAAGAAGCTAGAGAACTCTAGCAACAAACAAGTCACATTCTCAAAACGCCGCGCCGGCATATTCAAAAAAGCTGGCGAGCTTAGTGTGCTTTGTGGCGCCCATGTGGCAATTATAGTGTTCTCTGGCGCAGGGAAGGTGTTTTGCTATGGACACCCGAACATCAACATGGTGCTCGAGAGCTATCAAAACGGTCTTAGTTCAGTCGTCAGAGTTAATGAGGAAGCTGGCGATTTGCTGGTAGCGGAGTTCAACAAAGAGTACGTGGAGGCGGAGAAGGAGTTTGAGGATTTGAAGAGGAAAGCCACGGGGATTAAACAGATGGCGGATGAGAAGAAGAAGATGATGAAGAAAATGAACATGAGTGAGGGGTTTTGGTGGGATGAGGCTGTGGATTTGGCAATGATGGATGAACGGGAAGGGGAGCAGTATTTCAAGGCGTTGGAAGAGCTAAGGCGAAAGGTGGCTGCTAGGGTTGATGAGTTGAAGATTTTGAATGGGACTATGATGGGGCCGCCGGTCCCGGCGGTTCATCATCGACTTTGTCATGTGCCGTTCATGACCACCAATAATCGTTTTGGTAATTGTCAGGACGTCCAATTTGGTTCTGGTTATCATGATTTAGGGGTTTAA

Protein Analysis

222

Amino Acids

25.14

Weight (kDa)

8.92

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 15 - 62 3.4e-23 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 633
AccB1I GGYRCC 1 cut(s) 134
AccII CGCG 1 cut(s) 90
AciI CCGC 7 cut(s) 22, 88, 281, 308, 362, 551, 563
AcyI GRCGYC 2 cut(s) 135, 630
AfaI GTAC 1 cut(s) 299
AgsI TTSAA 6 cut(s) 103, 289, 331, 472, 523, 532
AluBI AGCT 6 cut(s) 46, 110, 118, 219, 263, 487
AluI AGCT 6 cut(s) 46, 110, 118, 219, 263, 487
Alw21I GWGCWC 1 cut(s) 213
Ama87I CYCGRG 1 cut(s) 212
AoxI GGCC 2 cut(s) 19, 548
ApeKI GCWGC 1 cut(s) 503
ArsI GACNNNNNNTTYG 2 cut(s) 620, 652
AspLEI GCGC 3 cut(s) 92, 137, 167
AspS9I GGNCC 2 cut(s) 548, 556
AsuC2I CCSGG 1 cut(s) 560
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 1 cut(s) 556
BanI GGYRCC 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 490
BccI CCATC 3 cut(s) 352, 436, 538
BceAI ACGGC 1 cut(s) 574
BcnI CCSGG 1 cut(s) 560
BfaI CTAG 3 cut(s) 47, 57, 507
BfoI RGCGCY 1 cut(s) 138
BglI GCCNNNNNGGC 2 cut(s) 93, 143
BisI GCNGC 4 cut(s) 22, 88, 504, 551
BlsI GCNGC 4 cut(s) 23, 89, 505, 552
Bme1390I CCNGG 1 cut(s) 560
Bme18I GGWCC 1 cut(s) 556
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 2 cut(s) 548, 556
BmiI GGNNCC 3 cut(s) 136, 549, 558
BmrFI CCNGG 1 cut(s) 560
BpiI GAAGAC 1 cut(s) 17
Bpu10I CCTNAGC 1 cut(s) 488
BpuMI CCSGG 1 cut(s) 560
BsaAI YACGTR 1 cut(s) 301
BsaHI GRCGYC 2 cut(s) 135, 630
BsaJI CCNNGG 2 cut(s) 16, 342
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bse118I RCCGGY 2 cut(s) 92, 553
Bse3DI GCAATG 1 cut(s) 444
BseDI CCNNGG 2 cut(s) 16, 342
BseGI GGATG 3 cut(s) 370, 424, 451
BseMI GCAATG 1 cut(s) 444
BseXI GCAGC 1 cut(s) 490
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 2 cut(s) 21, 550
BshNI GGYRCC 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 213
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 3 cut(s) 93, 554, 560
BslFI GGGAC 2 cut(s) 542, 550
BsmFI GGGAC 2 cut(s) 542, 550
BsnI GGCC 2 cut(s) 21, 550
BsoBI CYCGRG 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 1 cut(s) 36
BspACI CCGC 7 cut(s) 22, 88, 281, 308, 362, 551, 563
BspANI GGCC 2 cut(s) 21, 550
BspFNI CGCG 1 cut(s) 90
BspHI TCATGA 2 cut(s) 594, 652
BspLI GGNNCC 3 cut(s) 136, 549, 558
BspQI GCTCTTC 1 cut(s) 477
BspT107I GGYRCC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 444
BsrFI RCCGGY 2 cut(s) 92, 553
BssAI RCCGGY 2 cut(s) 92, 553
BssECI CCNNGG 2 cut(s) 16, 342
BssMI GATC 1 cut(s) 36
BssNI GRCGYC 2 cut(s) 135, 630
BssT1I CCWWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 230
Bst6I CTCTTC 2 cut(s) 326, 477
BstACI GRCGYC 2 cut(s) 135, 630
BstBAI YACGTR 1 cut(s) 301
BstC8I GCNNGC 4 cut(s) 94, 112, 116, 265
BstDEI CTNAG 3 cut(s) 119, 233, 488
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 3 cut(s) 370, 424, 451
BstFNI CGCG 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 3 cut(s) 92, 137, 167
BstKTI GATC 1 cut(s) 39
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 3 cut(s) 93, 124, 143
BstSCI CCNGG 1 cut(s) 558
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 490
BstV2I GAAGAC 1 cut(s) 17
BsuRI GGCC 2 cut(s) 21, 550
BtgI CCRYGG 1 cut(s) 342
BtsCI GGATG 3 cut(s) 370, 424, 451
Cac8I GCNNGC 4 cut(s) 94, 112, 116, 265
CciI TCATGA 2 cut(s) 594, 652
CfoI GCGC 3 cut(s) 92, 137, 167
Cfr10I RCCGGY 2 cut(s) 92, 553
Cfr13I GGNCC 2 cut(s) 548, 556
Csp6I GTAC 1 cut(s) 298
CviAII CATG 6 cut(s) 140, 205, 397, 584, 595, 653
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 3 cut(s) 119, 233, 488
DinI GGCGCC 1 cut(s) 136
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eam1104I CTCTTC 2 cut(s) 326, 477
EarI CTCTTC 2 cut(s) 326, 477
EciI GGCGGA 2 cut(s) 323, 377
Eco130I CCWWGG 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 556
Eco88I CYCGRG 1 cut(s) 212
EcoT14I CCWWGG 1 cut(s) 16
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 6 cut(s) 143, 208, 400, 587, 598, 656
FaqI GGGAC 2 cut(s) 542, 550
FatI CATG 6 cut(s) 139, 204, 396, 583, 594, 652
Fnu4HI GCNGC 4 cut(s) 22, 88, 504, 551
FokI GGATG 3 cut(s) 377, 431, 458
Fsp4HI GCNGC 4 cut(s) 22, 88, 504, 551
FspBI CTAG 3 cut(s) 47, 57, 507
GlaI GCGC 3 cut(s) 91, 136, 166
GluI GCNGC 4 cut(s) 22, 88, 504, 551
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 2 cut(s) 21, 550
HapII CCGG 3 cut(s) 93, 554, 560
HhaI GCGC 3 cut(s) 92, 137, 167
Hin1I GRCGYC 2 cut(s) 135, 630
Hin1II CATG 6 cut(s) 143, 208, 400, 587, 598, 656
Hin6I GCGC 3 cut(s) 90, 135, 165
HinP1I GCGC 3 cut(s) 90, 135, 165
HpaII CCGG 3 cut(s) 93, 554, 560
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 5 cut(s) 40, 214, 595, 626, 653
HpyAV CCTTC 3 cut(s) 166, 307, 449
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4IV ACGT 2 cut(s) 300, 630
HpyF10VI GCNNNNNNNGC 3 cut(s) 93, 124, 143
HpyF3I CTNAG 3 cut(s) 119, 233, 488
HpySE526I ACGT 2 cut(s) 300, 630
Hsp92I GRCGYC 2 cut(s) 135, 630
Hsp92II CATG 6 cut(s) 143, 208, 400, 587, 598, 656
HspAI GCGC 3 cut(s) 90, 135, 165
KasI GGCGCC 1 cut(s) 134
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Kzo9I GATC 1 cut(s) 36
LguI GCTCTTC 1 cut(s) 477
LmnI GCTCC 1 cut(s) 460
Lsp1109I GCAGC 1 cut(s) 490
MaeI CTAG 3 cut(s) 47, 57, 507
MaeII ACGT 2 cut(s) 300, 630
MaeIII GTNAC 1 cut(s) 70
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 8 cut(s) 22, 343, 382, 385, 388, 397, 494, 535
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 4 cut(s) 30, 147, 619, 635
Mly113I GGCGCC 1 cut(s) 135
MmeI TCCRAC 1 cut(s) 459
MnlI CCTC 6 cut(s) 250, 298, 316, 327, 397, 415
MroNI GCCGGC 1 cut(s) 92
MseI TTAA 3 cut(s) 252, 351, 667
MslI CAYNNNNRTG 1 cut(s) 203
MspI CCGG 3 cut(s) 93, 554, 560
MspR9I CCNGG 1 cut(s) 560
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 3 cut(s) 93, 124, 143
NaeI GCCGGC 1 cut(s) 94
NarI GGCGCC 1 cut(s) 135
NciI CCSGG 1 cut(s) 560
NdeII GATC 1 cut(s) 36
NgoMIV GCCGGC 1 cut(s) 92
NlaIII CATG 6 cut(s) 143, 208, 400, 587, 598, 656
NlaIV GGNNCC 3 cut(s) 136, 549, 558
NmuCI GTSAC 1 cut(s) 70
PaeR7I CTCGAG 1 cut(s) 212
PagI TCATGA 2 cut(s) 594, 652
PciSI GCTCTTC 1 cut(s) 477
PdiI GCCGGC 1 cut(s) 94
PflFI GACNNNGTC 1 cut(s) 579
PkrI GCNGC 4 cut(s) 23, 89, 505, 552
PluTI GGCGCC 1 cut(s) 138
Ppu21I YACGTR 1 cut(s) 301
PspN4I GGNNCC 3 cut(s) 136, 549, 558
PspPI GGNCC 2 cut(s) 548, 556
PsyI GACNNNGTC 1 cut(s) 579
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 203
SapI GCTCTTC 1 cut(s) 477
SaqAI TTAA 3 cut(s) 252, 351, 667
SatI GCNGC 4 cut(s) 22, 88, 504, 551
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 2 cut(s) 548, 556
ScrFI CCNGG 1 cut(s) 560
SduI GDGCHC 1 cut(s) 213
SfoI GGCGCC 1 cut(s) 136
Sfr274I CTCGAG 1 cut(s) 212
SinI GGWCC 1 cut(s) 556
SlaI CTCGAG 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 4 cut(s) 30, 147, 619, 635
SsiI CCGC 7 cut(s) 22, 88, 281, 308, 362, 551, 563
SspDI GGCGCC 1 cut(s) 134
SspMI CTAG 3 cut(s) 47, 57, 507
StyD4I CCNGG 1 cut(s) 558
StyI CCWWGG 1 cut(s) 16
TaaI ACNGT 1 cut(s) 230
TaiI ACGT 2 cut(s) 303, 633
TaqI TCGA 2 cut(s) 213, 574
TasI AATT 4 cut(s) 30, 147, 619, 635
TauI GCSGC 3 cut(s) 24, 90, 553
Tru1I TTAA 3 cut(s) 252, 351, 667
Tru9I TTAA 3 cut(s) 252, 351, 667
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 1 cut(s) 503
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 5 cut(s) 398, 407, 462, 557, 583
Tth111I GACNNNGTC 1 cut(s) 579
VpaK11BI GGWCC 1 cut(s) 556
XcmI CCANNNNNNNNNTGG 1 cut(s) 641
XhoI CTCGAG 1 cut(s) 212
XspI CTAG 3 cut(s) 47, 57, 507
ZraI GACGTC 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.