Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036612.1

Orthogroup ID

OG0000510

Physical Location & Seq

Genomic Coordinates Reverse (-)

293 .. 585

Gene Structure 293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036612.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 293 bp

tgaatgagtgccaattggtgcttctcccgcatgtgggagatcatgttatcaacgcgagaatcttgagtggggatttgaaggtgggagttgaagttgaaaaaggagatgaagatgggttgttcaccaaggaaggtgtttgcaaagctgtgaaagcagtgatggatggagacagtgaggtgggaaaggaggtgaggaccaaccatgctaagtggagggagttcttctccaataaagggcttgagagctcatacattgatggttttgtgcagaagctgcatgaactgcaacgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00942 map00942

Pfam Domains

Protein Families

UDPGT

Protein Analysis

96

Amino Acids

10.69

Weight (kDa)

5.52

Isoelectric Point (pI)

23.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000510)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica	MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica	Prupe.4G054800_v2.0.a1
pyrus_communis	pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis	RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata	RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora	Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa	Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha	Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana	Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	55
AciI	CCGC	1 cut(s)	28
AfiI	CCNNNNNNNGG	3 cut(s)	33, 34, 233
AgsI	TTSAA	3 cut(s)	78, 91, 97
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	3 cut(s)	145, 245, 273
AluI	AGCT	3 cut(s)	145, 245, 273
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	161
AlwNI	CAGNNNCTG	1 cut(s)	273
ApeKI	GCWGC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	114, 201
AvaII	GGWCC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	4 cut(s)	106, 153, 157, 250
BcoDI	GTCTC	1 cut(s)	161
BisI	GCNGC	1 cut(s)	274
BlsI	GCNGC	1 cut(s)	275
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	194
BplI	GAGNNNNNCTC	2 cut(s)	208, 240
BpuEI	CTTGAG	2 cut(s)	84, 259
BsaJI	CCNNGG	1 cut(s)	125
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 77, 107
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 34, 233
BseDI	CCNNGG	1 cut(s)	125
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	3 cut(s)	33, 34, 233
BseXI	GCAGC	1 cut(s)	260
BsgI	GTGCAG	1 cut(s)	286
Bsh1236I	CGCG	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	247
BslI	CCNNNNNNNGG	3 cut(s)	33, 34, 233
BsmAI	GTCTC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	1 cut(s)	39
BspACI	CCGC	1 cut(s)	28
BspFNI	CGCG	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	125
BssMI	GATC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	172
BstAPI	GCANNNNNTGC	2 cut(s)	273, 282
BstDEI	CTNAG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	55
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 151, 273, 282
BstNSI	RCATGY	1 cut(s)	34
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	161
BtsIMutI	CAGTG	2 cut(s)	161, 177
CaiI	CAGNNNCTG	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	194
CviAII	CATG	4 cut(s)	31, 43, 202, 277
CviJI	RGCY	4 cut(s)	145, 237, 245, 273
CviKI_1	RGCY	4 cut(s)	145, 237, 245, 273
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	194
Eco53kI	GAGCTC	1 cut(s)	245
EcoICRI	GAGCTC	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	125
EcoT38I	GRGCYC	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	4 cut(s)	34, 46, 205, 280
FaiI	YATR	5 cut(s)	32, 44, 203, 249, 278
FatI	CATG	4 cut(s)	30, 42, 201, 276
FauI	CCCGC	1 cut(s)	35
Fnu4HI	GCNGC	1 cut(s)	274
FokI	GGATG	1 cut(s)	175
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	1 cut(s)	274
GluI	GCNGC	1 cut(s)	274
Hin1II	CATG	4 cut(s)	34, 46, 205, 280
HinfI	GANTC	1 cut(s)	59
HphI	GGTGA	2 cut(s)	114, 201
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188III	TCNNGA	1 cut(s)	63
Hpy8I	GTNNAC	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	72, 124
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	4 cut(s)	140, 267, 276, 285
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 151, 273, 282
HpyF3I	CTNAG	1 cut(s)	206
Hsp92II	CATG	4 cut(s)	34, 46, 205, 280
Kzo9I	GATC	1 cut(s)	39
Lsp1109I	GCAGC	1 cut(s)	260
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	2 cut(s)	121, 213
MfeI	CAATTG	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	1 cut(s)	13
MnlI	CCTC	4 cut(s)	168, 180, 185, 206
MunI	CAATTG	1 cut(s)	13
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	4 cut(s)	27, 151, 273, 282
NdeII	GATC	1 cut(s)	39
NlaIII	CATG	4 cut(s)	34, 46, 205, 280
NspI	RCATGY	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	275
Psp124BI	GAGCTC	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	194
PstNI	CAGNNNCTG	1 cut(s)	273
SacI	GAGCTC	1 cut(s)	247
SatI	GCNGC	1 cut(s)	274
Sau3AI	GATC	1 cut(s)	39
Sau96I	GGNCC	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	7 cut(s)	83, 135, 147, 179, 191, 247, 275
SinI	GGWCC	1 cut(s)	194
SmlI	CTYRAG	2 cut(s)	63, 238
SmoI	CTYRAG	2 cut(s)	63, 238
Sse9I	AATT	1 cut(s)	13
SsiI	CCGC	1 cut(s)	28
SstI	GAGCTC	1 cut(s)	247
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	172
TasI	AATT	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	59
TscAI	CASTG	2 cut(s)	161, 177
TseI	GCWGC	1 cut(s)	273
TspDTI	ATGAA	2 cut(s)	122, 293
TspRI	CASTG	2 cut(s)	161, 177
VpaK11BI	GGWCC	1 cut(s)	194
XceI	RCATGY	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.