FvH4_7g24190

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000510
Physical Location & Seq
Forward (+)
18698622 .. 18700475
1854 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24190.t1

Sequence Viewer

Length: 1380 bp
ATGAGTGACCAAACTATGCATATTGCTATGTATCCCTGGTTTGCTATGGGACATTTGACCTCTTATCTCCACATCTCCAACAAACTTGCTGAGAGAGGCCACAAAATCTCCTTCTTCATTCCCATCAAAACACAACCCAAGATGGTGCAATTCAATCTCCATCCGCATCTCATTTCCTTCATCCCCATCAATGTTCCTCATATTGATGGACTCCCTCTTGGCACCGAAACCACAGCCGATATTCCTCTCCATTTGCACCCCCATCTTGCAACCGCTATGGACCTAACTCGACCCCAAATTGAACAATCCCTTAGAGAAATCAACCCGAATTTCGTGTTCTATGATTTCAGTTACTGGTTGCCTGCATTCCTACGTCAACTAGGAAAGACTATTAAGTCGGTGCATTACTGTACAATTAGTCCTGCAACTGTGGGCTACTTGATAAGTCCCGAGAGAAAACTGAGTGAGAAAACACTGACAGAATTTGAATATAGGGAGGCTCCAACTTCATTTCCTTCGTCTTCGATCAAGCTACGGCCTCATGAAGCTCGAGGACTTGCCTATGGTGCAAACAAGGAATACGGCCGTGGGATAACATTTCTCAAACGCCAGCAGATTAACTTTGGTGATTGTGATGCCATTGCGTTTAAAACTTGTAGAGAATTGGAGGGTCCATTTTGTGATTATCTCGAAACGCAACTGAGGAAGCCGGTGATTCTTGCTGGTCCAGTTGTGCCAGATCCCCCAAGTTCACATTTGGAAGAGAAATGGGCAAACTGGCTTGGAGGCTTCGACTCAAAAACTGTGATTTTCTGTGCTTTTGGAAGTGAATGCATTTTGAGGAAAGAACAATTGCAAGAACTTTTGTTGGGTTTTGAGCTTACTGGTTTGCCTTTCTTCGCTGCGCTGAAGCCGCCAACCGGAGTTGAATCAATTGAATCAGCGTTGCCACAAGGGTTCTTGGAGAGGGTTGAAGGAAAAGGGATTGTTTATGGGGGTTGGGTTCAGCAGCCTTTGATACTTAAGCACCCATCTGTGGGTTGCTTTGTGACACATTGCGGTTCAGGGTCTTTATCCGAGGCATTAGTGAATGAGTGCCAATTGGTACTCCTGCCAAATGTGGGAGATCAGATCATCAATGCGAGGATGATGAGTGGTGATCTGAAAGTGGGAGTTGAGGTTGAGAAAGGGGATGAAGATGGCTTGTTTAGCAAGGAAGGCGTTTGCAAAGCTGTGAAAGCTGTGATTGATGAGGACAGTGAGGTTGAGAAGGAGGTGAGGGCCAACCATGCTAAGTGGAGGGAGTTCTTCTCCAGCAAAGGGCTCGAGAGCTCGTACATTGAGGATTTTGTACACAAGCTCCATAAACTGCTAAGATGA

Protein Analysis

460

Amino Acids

51.52

Weight (kDa)

6.23

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 333 - 420 4.5e-12 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 394
AccB1I GGYRCC 1 cut(s) 221
AciI CCGC 4 cut(s) 164, 273, 914, 1059
AclWI GGATC 1 cut(s) 734
AcoI YGGCCR 1 cut(s) 583
AcsI RAATTY 2 cut(s) 328, 482
AcuI CTGAAG 1 cut(s) 929
AfaI GTAC 4 cut(s) 412, 1107, 1337, 1353
AfiI CCNNNNNNNGG 5 cut(s) 920, 1036, 1037, 1121, 1320
AflII CTTAAG 1 cut(s) 1022
AgsI TTSAA 6 cut(s) 154, 302, 488, 929, 938, 974
AjnI CCWGG 1 cut(s) 35
AluBI AGCT 7 cut(s) 532, 548, 880, 1232, 1241, 1332, 1360
AluI AGCT 7 cut(s) 532, 548, 880, 1232, 1241, 1332, 1360
Alw21I GWGCWC 1 cut(s) 1334
AlwI GGATC 1 cut(s) 734
AlwNI CAGNNNCTG 1 cut(s) 354
Ama87I CYCGRG 3 cut(s) 449, 549, 1325
AoxI GGCC 4 cut(s) 97, 536, 583, 1281
ApeKI GCWGC 2 cut(s) 902, 1009
ApoI RAATTY 2 cut(s) 328, 482
AspLEI GCGC 1 cut(s) 907
AspS9I GGNCC 4 cut(s) 280, 671, 725, 1281
AsuHPI GGTGA 4 cut(s) 638, 724, 1169, 1288
AvaI CYCGRG 3 cut(s) 449, 549, 1325
AvaII GGWCC 3 cut(s) 280, 671, 725
BanI GGYRCC 1 cut(s) 221
BanII GRGCYC 2 cut(s) 1326, 1334
BbsI GAAGAC 1 cut(s) 513
Bbv12I GWGCWC 1 cut(s) 1334
BbvI GCAGC 2 cut(s) 889, 1021
BccI CCATC 8 cut(s) 131, 136, 168, 194, 200, 270, 1039, 1193
BceAI ACGGC 3 cut(s) 551, 570, 598
BcgI CGANNNNNNTGC 2 cut(s) 1306, 1340
BciT130I CCWGG 1 cut(s) 37
BciVI GTATCC 1 cut(s) 42
BfaI CTAG 1 cut(s) 380
BfrI CTTAAG 1 cut(s) 1022
BfuI GTATCC 1 cut(s) 42
BisI GCNGC 3 cut(s) 903, 914, 1010
BlsI GCNGC 3 cut(s) 904, 915, 1011
Bme1390I CCNGG 1 cut(s) 37
Bme18I GGWCC 3 cut(s) 280, 671, 725
BmeT110I CYCGRG 3 cut(s) 449, 549, 1325
BmgT120I GGNCC 4 cut(s) 280, 671, 725, 1281
BmiI GGNNCC 3 cut(s) 223, 501, 672
BmrFI CCNGG 1 cut(s) 37
BmsI GCATC 2 cut(s) 175, 625
BpiI GAAGAC 1 cut(s) 513
BplI GAGNNNNNCTC 2 cut(s) 1295, 1327
BpmI CTGGAG 1 cut(s) 1297
BsaJI CCNNGG 3 cut(s) 35, 586, 1077
BsaWI WCCGGW 1 cut(s) 920
BsaXI ACNNNNNCTCC 6 cut(s) 92, 122, 1164, 1194, 1344, 1374
Bsc4I CCNNNNNNNGG 5 cut(s) 920, 1036, 1037, 1121, 1320
Bse118I RCCGGY 1 cut(s) 709
Bse1I ACTGG 4 cut(s) 359, 728, 782, 889
Bse3DI GCAATG 2 cut(s) 639, 1054
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 3 cut(s) 35, 586, 1077
BseGI GGATG 4 cut(s) 160, 180, 1152, 1198
BseLI CCNNNNNNNGG 5 cut(s) 920, 1036, 1037, 1121, 1320
BseMI GCAATG 2 cut(s) 639, 1054
BseMII CTCAG 3 cut(s) 81, 452, 692
BseNI ACTGG 4 cut(s) 359, 728, 782, 889
BseX3I CGGCCG 1 cut(s) 583
BseXI GCAGC 2 cut(s) 889, 1021
Bsh1285I CGRYCG 1 cut(s) 586
BshFI GGCC 4 cut(s) 99, 538, 585, 1283
BshNI GGYRCC 1 cut(s) 221
BsiEI CGRYCG 1 cut(s) 586
BsiHKAI GWGCWC 1 cut(s) 1334
BsiHKCI CYCGRG 3 cut(s) 449, 549, 1325
BsiSI CCGG 2 cut(s) 710, 921
BslFI GGGAC 2 cut(s) 63, 432
BslI CCNNNNNNNGG 5 cut(s) 920, 1036, 1037, 1121, 1320
BsmFI GGGAC 2 cut(s) 63, 432
BsmI GAATGC 2 cut(s) 365, 836
BsnI GGCC 4 cut(s) 99, 538, 585, 1283
BsoBI CYCGRG 3 cut(s) 449, 549, 1325
Bsp1286I GDGCHC 2 cut(s) 1326, 1334
Bsp1407I TGTACA 2 cut(s) 410, 1351
Bsp143I GATC 5 cut(s) 525, 739, 1126, 1131, 1159
BspACI CCGC 4 cut(s) 164, 273, 914, 1059
BspANI GGCC 4 cut(s) 99, 538, 585, 1283
BspCNI CTCAG 3 cut(s) 82, 453, 693
BspHI TCATGA 1 cut(s) 541
BspLI GGNNCC 3 cut(s) 223, 501, 672
BspPI GGATC 1 cut(s) 734
BspT107I GGYRCC 1 cut(s) 221
BspTI CTTAAG 1 cut(s) 1022
BsrDI GCAATG 2 cut(s) 639, 1054
BsrFI RCCGGY 1 cut(s) 709
BsrGI TGTACA 2 cut(s) 410, 1351
BsrI ACTGG 4 cut(s) 359, 728, 782, 889
BssAI RCCGGY 1 cut(s) 709
BssECI CCNNGG 3 cut(s) 35, 586, 1077
BssMI GATC 5 cut(s) 525, 739, 1126, 1131, 1159
Bst2UI CCWGG 1 cut(s) 37
Bst4CI ACNGT 4 cut(s) 410, 430, 805, 1259
Bst6I CTCTTC 1 cut(s) 756
BstAFI CTTAAG 1 cut(s) 1022
BstAUI TGTACA 2 cut(s) 410, 1351
BstC8I GCNNGC 2 cut(s) 363, 611
BstDEI CTNAG 6 cut(s) 90, 311, 461, 701, 1293, 1373
BstDSI CCRYGG 1 cut(s) 586
BstF5I GGATG 4 cut(s) 160, 180, 1152, 1198
BstHHI GCGC 1 cut(s) 907
BstKTI GATC 5 cut(s) 528, 742, 1129, 1134, 1162
BstMBI GATC 5 cut(s) 525, 739, 1126, 1131, 1159
BstMCI CGRYCG 1 cut(s) 586
BstMWI GCNNNNNNNGC 6 cut(s) 566, 913, 1209, 1218, 1238, 1289
BstNI CCWGG 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 35
BstV1I GCAGC 2 cut(s) 889, 1021
BstV2I GAAGAC 1 cut(s) 513
BstX2I RGATCY 1 cut(s) 739
BstYI RGATCY 1 cut(s) 739
BstZI CGGCCG 1 cut(s) 583
BsuI GTATCC 1 cut(s) 42
BsuRI GGCC 4 cut(s) 99, 538, 585, 1283
BtgI CCRYGG 1 cut(s) 586
BtsCI GGATG 4 cut(s) 160, 180, 1152, 1198
BtsIMutI CAGTG 2 cut(s) 473, 1264
Cac8I GCNNGC 2 cut(s) 363, 611
CaiI CAGNNNCTG 1 cut(s) 354
CciI TCATGA 1 cut(s) 541
CfoI GCGC 1 cut(s) 907
Cfr10I RCCGGY 1 cut(s) 709
Cfr13I GGNCC 4 cut(s) 280, 671, 725, 1281
Csp6I GTAC 4 cut(s) 411, 1106, 1336, 1352
CviAII CATG 2 cut(s) 542, 1289
CviQI GTAC 4 cut(s) 411, 1106, 1336, 1352
DdeI CTNAG 6 cut(s) 90, 311, 461, 701, 1293, 1373
DpnI GATC 5 cut(s) 527, 741, 1128, 1133, 1161
DpnII GATC 5 cut(s) 525, 739, 1126, 1131, 1159
DraI TTTAAA 1 cut(s) 649
DrdI GACNNNNNNGTC 1 cut(s) 394
DseDI GACNNNNNNGTC 1 cut(s) 394
EaeI YGGCCR 1 cut(s) 583
EagI CGGCCG 1 cut(s) 583
Eam1104I CTCTTC 1 cut(s) 756
EarI CTCTTC 1 cut(s) 756
Ecl136II GAGCTC 1 cut(s) 1332
EclXI CGGCCG 1 cut(s) 583
Eco24I GRGCYC 2 cut(s) 1326, 1334
Eco47I GGWCC 3 cut(s) 280, 671, 725
Eco52I CGGCCG 1 cut(s) 583
Eco53kI GAGCTC 1 cut(s) 1332
Eco57I CTGAAG 1 cut(s) 929
Eco88I CYCGRG 3 cut(s) 449, 549, 1325
EcoICRI GAGCTC 1 cut(s) 1332
EcoRII CCWGG 1 cut(s) 35
EcoT22I ATGCAT 2 cut(s) 21, 836
EcoT38I GRGCYC 2 cut(s) 1326, 1334
FaeI CATG 2 cut(s) 545, 1292
FaqI GGGAC 2 cut(s) 63, 432
FatI CATG 2 cut(s) 541, 1288
Fnu4HI GCNGC 3 cut(s) 903, 914, 1010
FokI GGATG 4 cut(s) 147, 167, 1159, 1205
FriOI GRGCYC 2 cut(s) 1326, 1334
Fsp4HI GCNGC 3 cut(s) 903, 914, 1010
FspBI CTAG 1 cut(s) 380
GlaI GCGC 1 cut(s) 906
GluI GCNGC 3 cut(s) 903, 914, 1010
GsuI CTGGAG 1 cut(s) 1297
HaeIII GGCC 4 cut(s) 99, 538, 585, 1283
HapII CCGG 2 cut(s) 710, 921
HhaI GCGC 1 cut(s) 907
Hin1II CATG 2 cut(s) 545, 1292
Hin6I GCGC 1 cut(s) 905
HinP1I GCGC 1 cut(s) 905
HincII GTYRAC 1 cut(s) 377
HindII GTYRAC 1 cut(s) 377
HinfI GANTC 5 cut(s) 210, 715, 794, 929, 938
HpaII CCGG 2 cut(s) 710, 921
HphI GGTGA 4 cut(s) 638, 724, 1169, 1288
Hpy166II GTNNAC 3 cut(s) 377, 752, 1354
Hpy188I TCNGA 3 cut(s) 1078, 1131, 1164
Hpy188III TCNNGA 4 cut(s) 449, 542, 689, 1327
Hpy8I GTNNAC 3 cut(s) 377, 752, 1354
HpyAV CCTTC 6 cut(s) 121, 187, 525, 968, 1211, 1264
HpyCH4III ACNGT 4 cut(s) 410, 430, 805, 1259
HpyCH4IV ACGT 1 cut(s) 373
HpyF10VI GCNNNNNNNGC 6 cut(s) 566, 913, 1209, 1218, 1238, 1289
HpyF3I CTNAG 6 cut(s) 90, 311, 461, 701, 1293, 1373
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 2 cut(s) 545, 1292
HspAI GCGC 1 cut(s) 905
Kzo9I GATC 5 cut(s) 525, 739, 1126, 1131, 1159
LmnI GCTCC 2 cut(s) 505, 1365
Lsp1109I GCAGC 2 cut(s) 889, 1021
LweI GCATC 2 cut(s) 175, 625
MaeI CTAG 1 cut(s) 380
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 3 cut(s) 5, 350, 1048
MalI GATC 5 cut(s) 527, 741, 1128, 1133, 1161
MboI GATC 5 cut(s) 525, 739, 1126, 1131, 1159
MboII GAAGA 6 cut(s) 106, 513, 773, 889, 1208, 1300
MfeI CAATTG 3 cut(s) 851, 933, 1100
MflI RGATCY 1 cut(s) 739
MhlI GDGCHC 2 cut(s) 1326, 1334
MluCI AATT 9 cut(s) 149, 297, 328, 414, 482, 662, 851, 933, 1100
MlyI GAGTC 2 cut(s) 204, 788
MmeI TCCRAC 2 cut(s) 102, 527
Mph1103I ATGCAT 2 cut(s) 21, 836
MseI TTAA 4 cut(s) 393, 618, 648, 1023
MslI CAYNNNNRTG 1 cut(s) 204
MspCI CTTAAG 1 cut(s) 1022
MspI CCGG 2 cut(s) 710, 921
MspR9I CCNGG 1 cut(s) 37
MunI CAATTG 3 cut(s) 851, 933, 1100
Mva1269I GAATGC 2 cut(s) 365, 836
MvaI CCWGG 1 cut(s) 37
MwoI GCNNNNNNNGC 6 cut(s) 566, 913, 1209, 1218, 1238, 1289
NdeII GATC 5 cut(s) 525, 739, 1126, 1131, 1159
NlaIII CATG 2 cut(s) 545, 1292
NlaIV GGNNCC 3 cut(s) 223, 501, 672
NmuCI GTSAC 2 cut(s) 5, 1048
NsiI ATGCAT 2 cut(s) 21, 836
PaeR7I CTCGAG 2 cut(s) 549, 1325
PagI TCATGA 1 cut(s) 541
PctI GAATGC 2 cut(s) 365, 836
PfeI GAWTC 3 cut(s) 715, 929, 938
PkrI GCNGC 3 cut(s) 904, 915, 1011
PleI GAGTC 2 cut(s) 204, 788
PpsI GAGTC 2 cut(s) 204, 788
Psp124BI GAGCTC 1 cut(s) 1334
Psp6I CCWGG 1 cut(s) 35
PspGI CCWGG 1 cut(s) 35
PspN4I GGNNCC 3 cut(s) 223, 501, 672
PspPI GGNCC 4 cut(s) 280, 671, 725, 1281
PspXI VCTCGAGB 1 cut(s) 549
PstNI CAGNNNCTG 1 cut(s) 354
PsuI RGATCY 1 cut(s) 739
RsaI GTAC 4 cut(s) 412, 1107, 1337, 1353
RsaNI GTAC 4 cut(s) 411, 1106, 1336, 1352
RseI CAYNNNNRTG 1 cut(s) 204
SacI GAGCTC 1 cut(s) 1334
SaqAI TTAA 4 cut(s) 393, 618, 648, 1023
SatI GCNGC 3 cut(s) 903, 914, 1010
Sau3AI GATC 5 cut(s) 525, 739, 1126, 1131, 1159
Sau96I GGNCC 4 cut(s) 280, 671, 725, 1281
SchI GAGTC 2 cut(s) 204, 788
ScrFI CCNGG 1 cut(s) 37
SduI GDGCHC 2 cut(s) 1326, 1334
SfaNI GCATC 2 cut(s) 175, 625
Sfr274I CTCGAG 2 cut(s) 549, 1325
SinI GGWCC 3 cut(s) 280, 671, 725
SlaI CTCGAG 2 cut(s) 549, 1325
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 3 cut(s) 549, 1022, 1325
SmoI CTYRAG 3 cut(s) 549, 1022, 1325
Sse9I AATT 9 cut(s) 149, 297, 328, 414, 482, 662, 851, 933, 1100
SsiI CCGC 4 cut(s) 164, 273, 914, 1059
SspMI CTAG 1 cut(s) 380
SstI GAGCTC 1 cut(s) 1334
StyD4I CCNGG 1 cut(s) 35
TaaI ACNGT 4 cut(s) 410, 430, 805, 1259
TaiI ACGT 1 cut(s) 376
TaqI TCGA 6 cut(s) 289, 524, 550, 690, 792, 1326
TasI AATT 9 cut(s) 149, 297, 328, 414, 482, 662, 851, 933, 1100
TatI WGTACW 2 cut(s) 410, 1351
TauI GCSGC 1 cut(s) 916
TfiI GAWTC 3 cut(s) 715, 929, 938
Tru1I TTAA 4 cut(s) 393, 618, 648, 1023
Tru9I TTAA 4 cut(s) 393, 618, 648, 1023
TscAI CASTG 2 cut(s) 480, 1264
TseFI GTSAC 2 cut(s) 5, 1048
TseI GCWGC 2 cut(s) 902, 1009
Tsp45I GTSAC 2 cut(s) 5, 1048
TspDTI ATGAA 5 cut(s) 106, 169, 498, 558, 1209
TspRI CASTG 2 cut(s) 480, 1264
Vha464I CTTAAG 1 cut(s) 1022
VpaK11BI GGWCC 3 cut(s) 280, 671, 725
XapI RAATTY 2 cut(s) 328, 482
XhoI CTCGAG 2 cut(s) 549, 1325
XspI CTAG 1 cut(s) 380
Zsp2I ATGCAT 2 cut(s) 21, 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.