Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000510

Physical Location & Seq

Genomic Coordinates Forward (+)

6180625 .. 6181277

Gene Structure 653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG071500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAGTAACCAAACCTTGCATGTTGCTATGTATCCATGGTTTGCTATGGGTCATCTGACTCCATTCCTCCACATCTCCAACAAACTCGCAGAAAGAGGCCACAAGATCTCTTTGTTTTTACCTCTCAAAACTCAATCCAAGTTGCAGCACTATAATCACCACCCTCATCTCATTACCTTCATTCCTATCAATGTCCCTCATGTCGATGGCCTTCCCCCGGGGACTGAAACGACAGCTGACATTCCTCTCTCTTTGGGCTCTCTTCTTGCTACCGCCATGGACCTCACTCGACCCCAAATCGAACAATCTCTCCTCAAACTCAAGCCTGATTTTGTGTTCTTCGATTTTAGTTACTGGTTGCCTGCATTGTTGCGTGAACTAGGCAATAACATTAAGTCAGTATGTTACTGGGTAATTAATCCTGCAGCTATGTGGTACGGCGTGCGAAGTCTAGGCCTGCCTAGAAAAAATCAATCGGATGAAGCTGATCGTTCATTCTCATTACGAACTCACGAAGCTCGAGCTTTTGAAGCCATGATGAACATGGAATATGGCAGGGAGAGAATTCGCAGGGCCATTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00942 map00942

Pfam Domains

Protein Families

UDPGT

Protein Analysis

194

Amino Acids

22.29

Weight (kDa)

9.3

Isoelectric Point (pI)

46.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000510)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica	MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica	Prupe.4G054800_v2.0.a1
pyrus_communis	pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis	RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata	RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora	Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa	Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha	Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana	Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	564
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	1 cut(s)	530
AloI	GAACNNNNNNTCC	2 cut(s)	294, 326
AluBI	AGCT	5 cut(s)	236, 428, 485, 518, 524
AluI	AGCT	5 cut(s)	236, 428, 485, 518, 524
Ama87I	CYCGRG	2 cut(s)	217, 519
AoxI	GGCC	4 cut(s)	97, 208, 454, 573
ApeKI	GCWGC	2 cut(s)	145, 425
ApoI	RAATTY	1 cut(s)	564
AseI	ATTAAT	1 cut(s)	417
AspS9I	GGNCC	2 cut(s)	280, 573
AsuC2I	CCSGG	2 cut(s)	218, 219
AsuHPI	GGTGA	1 cut(s)	149
AvaI	CYCGRG	2 cut(s)	217, 519
AvaII	GGWCC	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	157, 437
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	1 cut(s)	454
BciVI	GTATCC	1 cut(s)	42
BcnI	CCSGG	2 cut(s)	218, 219
BfaI	CTAG	3 cut(s)	380, 452, 462
BfmI	CTRYAG	1 cut(s)	423
BfuI	GTATCC	1 cut(s)	42
BglII	AGATCT	1 cut(s)	105
BisI	GCNGC	2 cut(s)	146, 426
BlsI	GCNGC	2 cut(s)	147, 427
Bme1390I	CCNGG	2 cut(s)	218, 219
Bme18I	GGWCC	1 cut(s)	280
BmeT110I	CYCGRG	2 cut(s)	217, 519
BmgT120I	GGNCC	2 cut(s)	280, 573
BmrFI	CCNGG	2 cut(s)	218, 219
BmrI	ACTGGG	1 cut(s)	418
BmuI	ACTGGG	1 cut(s)	418
BpuEI	CTTGAG	1 cut(s)	305
BpuMI	CCSGG	2 cut(s)	218, 219
BsaJI	CCNNGG	5 cut(s)	35, 216, 217, 218, 276
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	2 cut(s)	359, 413
BseDI	CCNNGG	5 cut(s)	35, 216, 217, 218, 276
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseNI	ACTGG	2 cut(s)	359, 413
BseRI	GAGGAG	1 cut(s)	302
BseXI	GCAGC	2 cut(s)	157, 437
BshFI	GGCC	4 cut(s)	99, 210, 456, 575
BsiHKCI	CYCGRG	2 cut(s)	217, 519
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	2 cut(s)	179, 235
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmFI	GGGAC	2 cut(s)	179, 235
BsnI	GGCC	4 cut(s)	99, 210, 456, 575
BsoBI	CYCGRG	2 cut(s)	217, 519
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	105, 487
Bsp19I	CCATGG	2 cut(s)	35, 276
BspACI	CCGC	1 cut(s)	273
BspANI	GGCC	4 cut(s)	99, 210, 456, 575
BspMAI	CTGCAG	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	359, 413
BssECI	CCNNGG	5 cut(s)	35, 216, 217, 218, 276
BssMI	GATC	2 cut(s)	105, 487
BssT1I	CCWWGG	2 cut(s)	35, 276
Bst6I	CTCTTC	1 cut(s)	267
BstC8I	GCNNGC	3 cut(s)	363, 443, 458
BstDSI	CCRYGG	2 cut(s)	35, 276
BstF5I	GGATG	1 cut(s)	484
BstKTI	GATC	2 cut(s)	108, 490
BstMBI	GATC	2 cut(s)	105, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	2 cut(s)	216, 217
BstSFI	CTRYAG	1 cut(s)	423
BstV1I	GCAGC	2 cut(s)	157, 437
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	42
BsuRI	GGCC	4 cut(s)	99, 210, 456, 575
BtgI	CCRYGG	2 cut(s)	35, 276
BtsCI	GGATG	1 cut(s)	484
Cac8I	GCNNGC	3 cut(s)	363, 443, 458
Cfr13I	GGNCC	2 cut(s)	280, 573
Cfr9I	CCCGGG	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	6 cut(s)	20, 36, 200, 277, 535, 544
CviQI	GTAC	1 cut(s)	436
DpnI	GATC	2 cut(s)	107, 489
DpnII	GATC	2 cut(s)	105, 487
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco130I	CCWWGG	2 cut(s)	35, 276
Eco147I	AGGCCT	1 cut(s)	456
Eco24I	GRGCYC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	280
Eco88I	CYCGRG	2 cut(s)	217, 519
EcoRI	GAATTC	1 cut(s)	564
EcoT14I	CCWWGG	2 cut(s)	35, 276
EcoT38I	GRGCYC	1 cut(s)	260
ErhI	CCWWGG	2 cut(s)	35, 276
FaeI	CATG	6 cut(s)	23, 39, 203, 280, 538, 547
FaqI	GGGAC	2 cut(s)	179, 235
FatI	CATG	6 cut(s)	19, 35, 199, 276, 534, 543
Fnu4HI	GCNGC	2 cut(s)	146, 426
FokI	GGATG	1 cut(s)	491
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	2 cut(s)	146, 426
FspBI	CTAG	3 cut(s)	380, 452, 462
GluI	GCNGC	2 cut(s)	146, 426
HaeIII	GGCC	4 cut(s)	99, 210, 456, 575
HapII	CCGG	1 cut(s)	218
Hin1II	CATG	6 cut(s)	23, 39, 203, 280, 538, 547
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	2 cut(s)	57, 478
Hpy188III	TCNNGA	1 cut(s)	512
Hpy8I	GTNNAC	1 cut(s)	377
HpyAV	CCTTC	2 cut(s)	187, 221
HpyCH4V	TGCA	4 cut(s)	19, 145, 365, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
Hsp92II	CATG	6 cut(s)	23, 39, 203, 280, 538, 547
Kzo9I	GATC	2 cut(s)	105, 487
LpnPI	CCDG	9 cut(s)	231, 339, 340, 375, 394, 435, 470, 541, 556
Lsp1109I	GCAGC	2 cut(s)	157, 437
MaeI	CTAG	3 cut(s)	380, 452, 462
MaeIII	GTNAC	3 cut(s)	5, 350, 404
MalI	GATC	2 cut(s)	107, 489
MboI	GATC	2 cut(s)	105, 487
MboII	GAAGA	2 cut(s)	254, 331
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	2 cut(s)	414, 564
MlyI	GAGTC	1 cut(s)	52
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	8 cut(s)	77, 89, 132, 174, 207, 255, 293, 323
MseI	TTAA	2 cut(s)	393, 417
MslI	CAYNNNNRTG	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	2 cut(s)	218, 219
MwoI	GCNNNNNNNGC	1 cut(s)	530
NciI	CCSGG	2 cut(s)	218, 219
NcoI	CCATGG	2 cut(s)	35, 276
NdeII	GATC	2 cut(s)	105, 487
NlaIII	CATG	6 cut(s)	23, 39, 203, 280, 538, 547
NspI	RCATGY	1 cut(s)	23
PaeR7I	CTCGAG	1 cut(s)	519
PceI	AGGCCT	1 cut(s)	456
PkrI	GCNGC	2 cut(s)	147, 427
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PshBI	ATTAAT	1 cut(s)	417
PspPI	GGNCC	2 cut(s)	280, 573
PspXI	VCTCGAGB	1 cut(s)	519
PstI	CTGCAG	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	105
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	393, 417
SatI	GCNGC	2 cut(s)	146, 426
Sau3AI	GATC	2 cut(s)	105, 487
Sau96I	GGNCC	2 cut(s)	280, 573
SchI	GAGTC	1 cut(s)	52
ScrFI	CCNGG	2 cut(s)	218, 219
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	9 cut(s)	17, 124, 179, 238, 285, 430, 487, 520, 526
SfcI	CTRYAG	1 cut(s)	423
Sfr274I	CTCGAG	1 cut(s)	519
SinI	GGWCC	1 cut(s)	280
SlaI	CTCGAG	1 cut(s)	519
SmaI	CCCGGG	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	2 cut(s)	320, 519
SmoI	CTYRAG	2 cut(s)	320, 519
Sse9I	AATT	2 cut(s)	414, 564
SseBI	AGGCCT	1 cut(s)	456
SsiI	CCGC	1 cut(s)	273
SspMI	CTAG	3 cut(s)	380, 452, 462
StuI	AGGCCT	1 cut(s)	456
StyD4I	CCNGG	2 cut(s)	216, 217
StyI	CCWWGG	2 cut(s)	35, 276
TaqI	TCGA	5 cut(s)	204, 289, 300, 342, 520
TasI	AATT	2 cut(s)	414, 564
Tru1I	TTAA	2 cut(s)	393, 417
Tru9I	TTAA	2 cut(s)	393, 417
TseI	GCWGC	2 cut(s)	145, 425
TspDTI	ATGAA	4 cut(s)	169, 483, 495, 554
TspMI	CCCGGG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	280
VspI	ATTAAT	1 cut(s)	417
XapI	RAATTY	1 cut(s)	564
XceI	RCATGY	1 cut(s)	23
XcmI	CCANNNNNNNNNTGG	1 cut(s)	541
XhoI	CTCGAG	1 cut(s)	519
XmaI	CCCGGG	1 cut(s)	217
XspI	CTAG	3 cut(s)	380, 452, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.