MD05G1307700.v1.1

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000510
Physical Location & Seq
Forward (+)
43921510 .. 43922130
621 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1307700.v1.1.491

Sequence Viewer

Length: 621 bp
ATGGGGGACAAGAAACTTCACGTTCCCATGTATCCTTGGTTTGCAATGCGGCACCTGATCGCATTCCTCCACACCTGCAACAAATTAGCTGAGAGAGGCCACATAATCTCCTTCTTTGTCCCCGTCAAAACCCTACAAAAGTTAGAGGTTTTTAATCTCTACCCGGATCGCACTGCCTTCATCCCCATCAATGTCCCTCACGTTGACGGGCTTCCACCGGGCACCGAAACCACAGCTGACGTTCCTTTCCCCCTGCACTCGCTCCTCATAACCGCCATGGACCTCACCCGGCCTGCAGTTGGACAAGCCCTCAGGGAACTCAAGCCCGATTTTATTTTCTTCGACTTCACGCATTGGCTGCCGGAGTTGTTACATGAGCTTGATATGGGCATTATGTCCATACATTACCGTATTATTAGTCCTGCAACCATCGGGCACCTGTCAACTCCCGAAAGGAATCCGATGGAGAAACAGCCAACAGCGGCTGACCTTATCCTGCCTCCGCCATCCTTCCCTGCATCATCGATTACCAACGCACGAAGCTCATGGGCTTGTAGCGGTCATGTCGATGGAATTCGGCAGTGGGGTGACATTCACGCAACGCCAATTTATTTGTTTTAG

Protein Analysis

207

Amino Acids

23.24

Weight (kDa)

6.44

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 83
AccB1I GGYRCC 3 cut(s) 51, 221, 435
AciI CCGC 5 cut(s) 49, 273, 482, 503, 558
AclWI GGATC 1 cut(s) 174
AcsI RAATTY 1 cut(s) 573
AfiI CCNNNNNNNGG 1 cut(s) 299
AluBI AGCT 4 cut(s) 89, 236, 379, 543
AluI AGCT 4 cut(s) 89, 236, 379, 543
AlwI GGATC 1 cut(s) 174
AlwNI CAGNNNCTG 1 cut(s) 485
AoxI GGCC 2 cut(s) 97, 290
ApeKI GCWGC 1 cut(s) 358
ApoI RAATTY 1 cut(s) 573
AspS9I GGNCC 1 cut(s) 280
AsuC2I CCSGG 3 cut(s) 164, 219, 289
AsuHPI GGTGA 2 cut(s) 277, 599
AvaII GGWCC 1 cut(s) 280
AxyI CCTNAGG 1 cut(s) 311
BaeGI GKGCMC 2 cut(s) 224, 438
BanI GGYRCC 3 cut(s) 51, 221, 435
BbvI GCAGC 1 cut(s) 345
BccI CCATC 5 cut(s) 194, 437, 457, 514, 563
BciVI GTATCC 1 cut(s) 42
BcnI CCSGG 3 cut(s) 164, 219, 289
BfmI CTRYAG 1 cut(s) 294
BfuAI ACCTGC 1 cut(s) 83
BfuI GTATCC 1 cut(s) 42
BisI GCNGC 3 cut(s) 50, 359, 483
BlsI GCNGC 3 cut(s) 51, 360, 484
Bme1390I CCNGG 3 cut(s) 164, 219, 289
Bme18I GGWCC 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 3 cut(s) 53, 223, 437
BmrFI CCNGG 3 cut(s) 164, 219, 289
BmsI GCATC 1 cut(s) 527
BpuEI CTTGAG 1 cut(s) 305
BpuMI CCSGG 3 cut(s) 164, 219, 289
Bsa29I ATCGAT 1 cut(s) 524
BsaJI CCNNGG 2 cut(s) 35, 276
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse21I CCTNAGG 1 cut(s) 311
Bse3DI GCAATG 1 cut(s) 51
BseCI ATCGAT 1 cut(s) 524
BseDI CCNNGG 2 cut(s) 35, 276
BseGI GGATG 2 cut(s) 180, 506
BseLI CCNNNNNNNGG 1 cut(s) 299
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 2 cut(s) 81, 325
BseRI GAGGAG 1 cut(s) 254
BseSI GKGCMC 2 cut(s) 224, 438
BseXI GCAGC 1 cut(s) 345
BsgI GTGCAG 1 cut(s) 239
BshFI GGCC 2 cut(s) 99, 292
BshNI GGYRCC 3 cut(s) 51, 221, 435
BshVI ATCGAT 1 cut(s) 524
BsiSI CCGG 4 cut(s) 164, 218, 289, 362
BslFI GGGAC 3 cut(s) 20, 104, 179
BslI CCNNNNNNNGG 1 cut(s) 299
BsmFI GGGAC 3 cut(s) 20, 104, 179
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 2 cut(s) 99, 292
Bsp1286I GDGCHC 2 cut(s) 224, 438
Bsp143I GATC 2 cut(s) 57, 166
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 5 cut(s) 49, 273, 482, 503, 558
BspANI GGCC 2 cut(s) 99, 292
BspCNI CTCAG 2 cut(s) 82, 324
BspDI ATCGAT 1 cut(s) 524
BspLI GGNNCC 3 cut(s) 53, 223, 437
BspMAI CTGCAG 1 cut(s) 298
BspMI ACCTGC 1 cut(s) 83
BspPI GGATC 1 cut(s) 174
BspT107I GGYRCC 3 cut(s) 51, 221, 435
BsrDI GCAATG 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 35, 276
BssMI GATC 2 cut(s) 57, 166
BssT1I CCWWGG 2 cut(s) 35, 276
Bst4CI ACNGT 1 cut(s) 410
BstAPI GCANNNNNTGC 1 cut(s) 358
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 2 cut(s) 90, 311
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 2 cut(s) 180, 506
BstKTI GATC 2 cut(s) 60, 169
BstMBI GATC 2 cut(s) 57, 166
BstMWI GCNNNNNNNGC 1 cut(s) 358
BstSCI CCNGG 3 cut(s) 162, 217, 287
BstSFI CTRYAG 1 cut(s) 294
BstSLI GKGCMC 2 cut(s) 224, 438
BstV1I GCAGC 1 cut(s) 345
Bsu15I ATCGAT 1 cut(s) 524
Bsu36I CCTNAGG 1 cut(s) 311
BsuI GTATCC 1 cut(s) 42
BsuRI GGCC 2 cut(s) 99, 292
BsuTUI ATCGAT 1 cut(s) 524
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 2 cut(s) 180, 506
BtsI GCAGTG 2 cut(s) 171, 587
BtsIMutI CAGTG 2 cut(s) 171, 587
BveI ACCTGC 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 294
CaiI CAGNNNCTG 1 cut(s) 485
Cfr13I GGNCC 1 cut(s) 280
ClaI ATCGAT 1 cut(s) 524
CviAII CATG 5 cut(s) 28, 277, 374, 546, 563
DdeI CTNAG 2 cut(s) 90, 311
DpnI GATC 2 cut(s) 59, 168
DpnII GATC 2 cut(s) 57, 166
EciI GGCGGA 1 cut(s) 492
Eco130I CCWWGG 2 cut(s) 35, 276
Eco47I GGWCC 1 cut(s) 280
Eco81I CCTNAGG 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 573
EcoT14I CCWWGG 2 cut(s) 35, 276
ErhI CCWWGG 2 cut(s) 35, 276
FaeI CATG 5 cut(s) 31, 280, 377, 549, 566
FaqI GGGAC 3 cut(s) 20, 104, 179
FatI CATG 5 cut(s) 27, 276, 373, 545, 562
Fnu4HI GCNGC 3 cut(s) 50, 359, 483
FokI GGATG 2 cut(s) 167, 493
Fsp4HI GCNGC 3 cut(s) 50, 359, 483
GluI GCNGC 3 cut(s) 50, 359, 483
HaeIII GGCC 2 cut(s) 99, 292
HapII CCGG 4 cut(s) 164, 218, 289, 362
Hin1II CATG 5 cut(s) 31, 280, 377, 549, 566
HincII GTYRAC 2 cut(s) 205, 444
HindII GTYRAC 2 cut(s) 205, 444
HinfI GANTC 1 cut(s) 457
HpaII CCGG 4 cut(s) 164, 218, 289, 362
HphI GGTGA 2 cut(s) 277, 599
Hpy166II GTNNAC 2 cut(s) 205, 444
Hpy188I TCNGA 1 cut(s) 462
Hpy188III TCNNGA 1 cut(s) 449
Hpy8I GTNNAC 2 cut(s) 205, 444
HpyAV CCTTC 3 cut(s) 121, 187, 520
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4IV ACGT 3 cut(s) 21, 201, 240
HpyCH4V TGCA 6 cut(s) 44, 78, 256, 296, 425, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 358
HpyF3I CTNAG 2 cut(s) 90, 311
HpySE526I ACGT 3 cut(s) 21, 201, 240
Hsp92II CATG 5 cut(s) 31, 280, 377, 549, 566
Kzo9I GATC 2 cut(s) 57, 166
LmnI GCTCC 1 cut(s) 267
Lsp1109I GCAGC 1 cut(s) 345
LweI GCATC 1 cut(s) 527
MaeII ACGT 3 cut(s) 21, 201, 240
MaeIII GTNAC 2 cut(s) 369, 587
MalI GATC 2 cut(s) 59, 168
MboI GATC 2 cut(s) 57, 166
MboII GAAGA 1 cut(s) 331
MhlI GDGCHC 2 cut(s) 224, 438
MluCI AATT 3 cut(s) 83, 573, 606
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 8 cut(s) 77, 89, 139, 207, 275, 293, 320, 510
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 567
MspA1I CMGCKG 2 cut(s) 236, 482
MspI CCGG 4 cut(s) 164, 218, 289, 362
MspR9I CCNGG 3 cut(s) 164, 219, 289
Mva1269I GAATGC 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 358
NciI CCSGG 3 cut(s) 164, 219, 289
NcoI CCATGG 1 cut(s) 276
NdeII GATC 2 cut(s) 57, 166
NlaIII CATG 5 cut(s) 31, 280, 377, 549, 566
NlaIV GGNNCC 3 cut(s) 53, 223, 437
NmuCI GTSAC 1 cut(s) 587
PaqCI CACCTGC 1 cut(s) 83
PctI GAATGC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 457
PkrI GCNGC 3 cut(s) 51, 360, 484
PspN4I GGNNCC 3 cut(s) 53, 223, 437
PspPI GGNCC 1 cut(s) 280
PstI CTGCAG 1 cut(s) 298
PstNI CAGNNNCTG 1 cut(s) 485
PvuII CAGCTG 1 cut(s) 236
RseI CAYNNNNRTG 1 cut(s) 567
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 3 cut(s) 50, 359, 483
Sau3AI GATC 2 cut(s) 57, 166
Sau96I GGNCC 1 cut(s) 280
ScrFI CCNGG 3 cut(s) 164, 219, 289
SduI GDGCHC 2 cut(s) 224, 438
SfaNI GCATC 1 cut(s) 527
SfcI CTRYAG 1 cut(s) 294
SinI GGWCC 1 cut(s) 280
SmiMI CAYNNNNRTG 1 cut(s) 567
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 3 cut(s) 83, 573, 606
SsiI CCGC 5 cut(s) 49, 273, 482, 503, 558
StyD4I CCNGG 3 cut(s) 162, 217, 287
StyI CCWWGG 2 cut(s) 35, 276
TaaI ACNGT 1 cut(s) 410
TaiI ACGT 3 cut(s) 24, 204, 243
TaqI TCGA 3 cut(s) 342, 524, 567
TasI AATT 3 cut(s) 83, 573, 606
TauI GCSGC 2 cut(s) 52, 485
TfiI GAWTC 1 cut(s) 457
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 2 cut(s) 178, 587
TseFI GTSAC 1 cut(s) 587
TseI GCWGC 1 cut(s) 358
Tsp45I GTSAC 1 cut(s) 587
TspDTI ATGAA 1 cut(s) 169
TspRI CASTG 2 cut(s) 178, 587
VpaK11BI GGWCC 1 cut(s) 280
XapI RAATTY 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.