Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000510

Physical Location & Seq

Genomic Coordinates Forward (+)

5758361 .. 5759176

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG071000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCAAACAAGGAATTTGGCAGCGGATTGAGATTTGGCAAACGCATATTGACCTCTTTCAGCGATTGTGATGCAATTTGTTTCAAAACTTGCAGAGAATTCGCAGGGCCATTTTGTAACTATTTTGAAATCCAAATGAACAAGCCGGTCATTCTTGCAGGCCCAGTGGTGCCAGATCTCCCAAGTTCACGGCTGGAAGAGAAATGGGCAAAATGGCTTGGAGGGTTCGAACCAAGAACCGTGATTTTCTGTGCTCTTGGATCTGAATACATTCTCACAAAGCAGCAACTGCAACAACTATTATTGGGTTTTGAGCTTACTGGTTTGCCATTCTTCGCTGCCCTGAAACCGCCAACCGGAGTTGAATCAATTGAATCGGCACTGCCAGAAGGCTTTGAAATGCGTCTAAAAGGAAAAGGGGTGGTTCACGGGGGTTGGGTTCAGCAGCCTTTGATACTGAATCACCCATCTGTGGGTTGCTTTGTGACTCACTGCGGTTCGGGGTCTTTAAATGAGGCGTTAGTGAATGAGTGCCAATTGGTGCTTCTCCCACATGTGGGAGATCATGTTATCAACGCGAGAATCATGAGTGGTGATCTGAAGGTGGGAGTTGAAGTTGAAAAAGGAGATGAAGATGGATTGTTCACCAAGGAAGGTGTCTGCAAAGCTGTGAAAGCAGTGATGGATGGAGACAGTGAGGTGGGAAAGGAGGTGAGGACCAACCATGCTAAGTGGAGGGAGTTCTTCTCCAATAAAGGGCTTGAGAGCTCATACATTGATGGTTTTGTGCAGAAGCTGCATGAACTACTAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00942 map00942

Pfam Domains

Protein Families

UDPGT

Protein Analysis

271

Amino Acids

29.78

Weight (kDa)

5.85

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	146 - 232	1.3e-10	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000510)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica	MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica	Prupe.4G054800_v2.0.a1
pyrus_communis	pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis	RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata	RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora	Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa	Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha	Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana	Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	169
AccII	CGCG	1 cut(s)	578
AciI	CCGC	3 cut(s)	24, 350, 495
AclWI	GGATC	1 cut(s)	268
AcsI	RAATTY	2 cut(s)	14, 98
AcuI	CTGAAG	1 cut(s)	620
AfiI	CCNNNNNNNGG	6 cut(s)	356, 472, 473, 556, 557, 756
AflIII	ACRYGT	1 cut(s)	553
AgsI	TTSAA	7 cut(s)	85, 128, 365, 374, 398, 614, 620
AjuI	GAANNNNNNNTTGG	2 cut(s)	528, 560
AluBI	AGCT	4 cut(s)	316, 668, 768, 796
AluI	AGCT	4 cut(s)	316, 668, 768, 796
Alw21I	GWGCWC	2 cut(s)	256, 770
Alw26I	GTCTC	1 cut(s)	684
AlwI	GGATC	1 cut(s)	268
AlwNI	CAGNNNCTG	2 cut(s)	289, 796
AoxI	GGCC	2 cut(s)	107, 160
ApeKI	GCWGC	5 cut(s)	21, 283, 338, 445, 796
ApoI	RAATTY	2 cut(s)	14, 98
Asp700I	GAANNNNTTC	1 cut(s)	270
AspS9I	GGNCC	3 cut(s)	107, 161, 717
AsuHPI	GGTGA	4 cut(s)	455, 605, 637, 724
AsuII	TTCGAA	1 cut(s)	228
AvaII	GGWCC	1 cut(s)	717
BanI	GGYRCC	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	770
Bbv12I	GWGCWC	2 cut(s)	256, 770
BbvI	GCAGC	5 cut(s)	33, 295, 325, 457, 783
BccI	CCATC	5 cut(s)	475, 629, 676, 680, 773
BceAI	ACGGC	1 cut(s)	206
BcgI	CGANNNNNNTGC	4 cut(s)	53, 82, 87, 116
BcoDI	GTCTC	1 cut(s)	684
BfaI	CTAG	1 cut(s)	809
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	5 cut(s)	22, 284, 339, 446, 797
BlsI	GCNGC	5 cut(s)	23, 285, 340, 447, 798
Bme18I	GGWCC	1 cut(s)	717
BmgT120I	GGNCC	3 cut(s)	107, 161, 717
BmiI	GGNNCC	1 cut(s)	171
BmrI	ACTGGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	61
BmuI	ACTGGG	1 cut(s)	158
BplI	GAGNNNNNCTC	2 cut(s)	731, 763
Bpu14I	TTCGAA	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	782
BsaJI	CCNNGG	1 cut(s)	648
BsaWI	WCCGGW	1 cut(s)	356
BsaXI	ACNNNNNCTCC	4 cut(s)	552, 582, 600, 630
Bsc4I	CCNNNNNNNGG	6 cut(s)	356, 472, 473, 556, 557, 756
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	2 cut(s)	164, 325
BseDI	CCNNGG	1 cut(s)	648
BseGI	GGATG	1 cut(s)	691
BseLI	CCNNNNNNNGG	6 cut(s)	356, 472, 473, 556, 557, 756
BseNI	ACTGG	2 cut(s)	164, 325
BseXI	GCAGC	5 cut(s)	33, 295, 325, 457, 783
BsgI	GTGCAG	1 cut(s)	809
Bsh1236I	CGCG	1 cut(s)	578
BshFI	GGCC	2 cut(s)	109, 162
BshNI	GGYRCC	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	256, 770
BsiSI	CCGG	2 cut(s)	146, 357
BslI	CCNNNNNNNGG	6 cut(s)	356, 472, 473, 556, 557, 756
BsmAI	GTCTC	1 cut(s)	684
BsnI	GGCC	2 cut(s)	109, 162
Bsp119I	TTCGAA	1 cut(s)	228
Bsp1286I	GDGCHC	2 cut(s)	256, 770
Bsp143I	GATC	4 cut(s)	175, 260, 562, 595
BspACI	CCGC	3 cut(s)	24, 350, 495
BspANI	GGCC	2 cut(s)	109, 162
BspFNI	CGCG	1 cut(s)	578
BspHI	TCATGA	1 cut(s)	585
BspLI	GGNNCC	1 cut(s)	171
BspPI	GGATC	1 cut(s)	268
BspT104I	TTCGAA	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	169
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	2 cut(s)	164, 325
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	648
BssMI	GATC	4 cut(s)	175, 260, 562, 595
BssT1I	CCWWGG	1 cut(s)	648
Bst4CI	ACNGT	2 cut(s)	241, 695
Bst6I	CTCTTC	1 cut(s)	192
BstAPI	GCANNNNNTGC	2 cut(s)	289, 796
BstBI	TTCGAA	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	1 cut(s)	729
BstF5I	GGATG	1 cut(s)	691
BstFNI	CGCG	1 cut(s)	578
BstKTI	GATC	4 cut(s)	178, 263, 565, 598
BstMAI	GTCTC	1 cut(s)	684
BstMBI	GATC	4 cut(s)	175, 260, 562, 595
BstMWI	GCNNNNNNNGC	3 cut(s)	289, 674, 796
BstNSI	RCATGY	1 cut(s)	557
BstUI	CGCG	1 cut(s)	578
BstV1I	GCAGC	5 cut(s)	33, 295, 325, 457, 783
BstX2I	RGATCY	2 cut(s)	175, 260
BstYI	RGATCY	2 cut(s)	175, 260
BsuRI	GGCC	2 cut(s)	109, 162
BtsCI	GGATG	1 cut(s)	691
BtsI	GCAGTG	3 cut(s)	380, 490, 684
BtsIMutI	CAGTG	5 cut(s)	171, 380, 490, 684, 700
Cac8I	GCNNGC	1 cut(s)	160
CaiI	CAGNNNCTG	2 cut(s)	289, 796
CciI	TCATGA	1 cut(s)	585
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	3 cut(s)	107, 161, 717
CseI	GACGC	1 cut(s)	392
CviAII	CATG	5 cut(s)	554, 566, 586, 725, 800
DdeI	CTNAG	1 cut(s)	729
DpnI	GATC	4 cut(s)	177, 262, 564, 597
DpnII	GATC	4 cut(s)	175, 260, 562, 595
DraI	TTTAAA	1 cut(s)	510
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Ecl136II	GAGCTC	1 cut(s)	768
Eco130I	CCWWGG	1 cut(s)	648
Eco24I	GRGCYC	1 cut(s)	770
Eco47I	GGWCC	1 cut(s)	717
Eco53kI	GAGCTC	1 cut(s)	768
Eco57I	CTGAAG	1 cut(s)	620
EcoICRI	GAGCTC	1 cut(s)	768
EcoRI	GAATTC	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	648
EcoT38I	GRGCYC	1 cut(s)	770
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	5 cut(s)	557, 569, 589, 728, 803
FaiI	YATR	7 cut(s)	47, 555, 567, 587, 726, 772, 801
FatI	CATG	5 cut(s)	553, 565, 585, 724, 799
Fnu4HI	GCNGC	5 cut(s)	22, 284, 339, 446, 797
FokI	GGATG	1 cut(s)	698
FriOI	GRGCYC	1 cut(s)	770
Fsp4HI	GCNGC	5 cut(s)	22, 284, 339, 446, 797
FspBI	CTAG	1 cut(s)	809
GluI	GCNGC	5 cut(s)	22, 284, 339, 446, 797
HaeIII	GGCC	2 cut(s)	109, 162
HapII	CCGG	2 cut(s)	146, 357
HgaI	GACGC	1 cut(s)	392
Hin1II	CATG	5 cut(s)	557, 569, 589, 728, 803
HinfI	GANTC	5 cut(s)	365, 374, 460, 487, 582
HpaII	CCGG	2 cut(s)	146, 357
HphI	GGTGA	4 cut(s)	455, 605, 637, 724
Hpy166II	GTNNAC	3 cut(s)	188, 427, 645
Hpy188I	TCNGA	2 cut(s)	265, 600
Hpy188III	TCNNGA	1 cut(s)	586
Hpy8I	GTNNAC	3 cut(s)	188, 427, 645
HpyAV	CCTTC	3 cut(s)	383, 595, 647
HpyCH4III	ACNGT	2 cut(s)	241, 695
HpyCH4V	TGCA	7 cut(s)	74, 93, 158, 292, 663, 790, 799
HpyF10VI	GCNNNNNNNGC	3 cut(s)	289, 674, 796
HpyF3I	CTNAG	1 cut(s)	729
Hsp92II	CATG	5 cut(s)	557, 569, 589, 728, 803
Kzo9I	GATC	4 cut(s)	175, 260, 562, 595
Lsp1109I	GCAGC	5 cut(s)	33, 295, 325, 457, 783
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	809
MaeIII	GTNAC	2 cut(s)	116, 484
MalI	GATC	4 cut(s)	177, 262, 564, 597
MboI	GATC	4 cut(s)	175, 260, 562, 595
MboII	GAAGA	4 cut(s)	209, 325, 644, 736
MfeI	CAATTG	2 cut(s)	369, 536
MflI	RGATCY	2 cut(s)	175, 260
MhlI	GDGCHC	2 cut(s)	256, 770
MluCI	AATT	5 cut(s)	14, 75, 98, 369, 536
MlyI	GAGTC	1 cut(s)	481
MnlI	CCTC	7 cut(s)	64, 215, 508, 691, 703, 708, 729
MroXI	GAANNNNTTC	1 cut(s)	270
MseI	TTAA	1 cut(s)	509
MspA1I	CMGCKG	1 cut(s)	24
MspI	CCGG	2 cut(s)	146, 357
MunI	CAATTG	2 cut(s)	369, 536
MvnI	CGCG	1 cut(s)	578
MwoI	GCNNNNNNNGC	3 cut(s)	289, 674, 796
NdeII	GATC	4 cut(s)	175, 260, 562, 595
NlaIII	CATG	5 cut(s)	557, 569, 589, 728, 803
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	484
NspI	RCATGY	1 cut(s)	557
NspV	TTCGAA	1 cut(s)	228
PagI	TCATGA	1 cut(s)	585
PciI	ACATGT	1 cut(s)	553
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	4 cut(s)	365, 374, 460, 582
PkrI	GCNGC	5 cut(s)	23, 285, 340, 447, 798
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
PscI	ACATGT	1 cut(s)	553
Psp124BI	GAGCTC	1 cut(s)	770
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	3 cut(s)	107, 161, 717
PstNI	CAGNNNCTG	2 cut(s)	289, 796
PsuI	RGATCY	2 cut(s)	175, 260
SacI	GAGCTC	1 cut(s)	770
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	5 cut(s)	22, 284, 339, 446, 797
Sau3AI	GATC	4 cut(s)	175, 260, 562, 595
Sau96I	GGNCC	3 cut(s)	107, 161, 717
SchI	GAGTC	1 cut(s)	481
SduI	GDGCHC	2 cut(s)	256, 770
SetI	ASST	9 cut(s)	56, 318, 606, 658, 670, 702, 714, 770, 798
SfaNI	GCATC	1 cut(s)	61
SfuI	TTCGAA	1 cut(s)	228
SinI	GGWCC	1 cut(s)	717
SmlI	CTYRAG	1 cut(s)	761
SmoI	CTYRAG	1 cut(s)	761
Sse9I	AATT	5 cut(s)	14, 75, 98, 369, 536
SsiI	CCGC	3 cut(s)	24, 350, 495
SspMI	CTAG	1 cut(s)	809
SstI	GAGCTC	1 cut(s)	770
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	2 cut(s)	241, 695
TaqI	TCGA	1 cut(s)	228
TasI	AATT	5 cut(s)	14, 75, 98, 369, 536
TfiI	GAWTC	4 cut(s)	365, 374, 460, 582
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	5 cut(s)	171, 387, 497, 684, 700
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	5 cut(s)	21, 283, 338, 445, 796
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	3 cut(s)	152, 645, 816
TspRI	CASTG	5 cut(s)	171, 387, 497, 684, 700
VpaK11BI	GGWCC	1 cut(s)	717
XapI	RAATTY	2 cut(s)	14, 98
XceI	RCATGY	1 cut(s)	557
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	1 cut(s)	809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.