Rh5AG075400

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
6401182 .. 6401791
610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG075400.1

Sequence Viewer

Length: 585 bp
ATGGGCAACATGGCTTGGAGGGTTCAAACCCAGAACCAATATATTCTCACAAAGCAACAACTGCAACAACTATTATTGGGTTTTGAGCTTACTGGTTTGCCATTCTTCGCTGCCCTGAAACCGCCAACCGGAGTTGAATCAATTGAATCGGCAGTGCCAGAAGGCTTTGAAGAGCGTGTTAAAGAAAAAGGGGTTGTTTATGGGGGTTGGGTTCAGCAGCCTTTAATACTGAAGCACCCATCAATAGGTTGCTTTGTGACTCACTGCAGTTCAGGGTCTTTAAACGAGGCGTTGCTGAATGAGTGCCAATTGGTGTTTCTGCCAAATTTGATTGATCAGGTAATCAACGCGAGAATGATGAGCGGTGATTTGAAAGTTGGAGTTGAAGTTGAGAAAGGGGATGAAGATGGATTGTTCACCAAGGAAGGTGTCTGCAAAGCTGTGAGAGCTGTGATGGATGGGGACAGTGAGGTTGGAAAGGAGGTGAGCCCCAACCATGCTAAGTGGAGAGAGTTTATCTCCAGTAAAGGGCTTGAGAGCTCATACATTGATGGTTTTGCGCAGAAGTTGCATGACCTCCTATGA

Protein Analysis

194

Amino Acids

21.4

Weight (kDa)

5.14

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 69 - 156 3.5e-09 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 561
AccBSI CCGCTC 1 cut(s) 363
AccII CGCG 1 cut(s) 350
AciI CCGC 2 cut(s) 122, 363
AcsI RAATTY 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 251
AfiI CCNNNNNNNGG 3 cut(s) 128, 245, 528
AgsI TTSAA 6 cut(s) 26, 137, 146, 170, 373, 386
AjuI GAANNNNNNNTTGG 2 cut(s) 300, 332
AluBI AGCT 4 cut(s) 88, 440, 449, 540
AluI AGCT 4 cut(s) 88, 440, 449, 540
Alw21I GWGCWC 1 cut(s) 542
ApeKI GCWGC 2 cut(s) 110, 217
ApoI RAATTY 1 cut(s) 325
AspLEI GCGC 1 cut(s) 562
AsuHPI GGTGA 3 cut(s) 377, 409, 496
BanII GRGCYC 2 cut(s) 491, 542
Bbv12I GWGCWC 1 cut(s) 542
BbvI GCAGC 2 cut(s) 97, 229
BccI CCATC 5 cut(s) 247, 401, 448, 452, 545
BclI TGATCA 1 cut(s) 334
BfmI CTRYAG 1 cut(s) 265
BisI GCNGC 2 cut(s) 111, 218
BlsI GCNGC 2 cut(s) 112, 219
BplI GAGNNNNNCTC 2 cut(s) 503, 535
BpmI CTGGAG 1 cut(s) 505
BpuEI CTTGAG 1 cut(s) 554
BsaJI CCNNGG 1 cut(s) 420
BsaWI WCCGGW 1 cut(s) 128
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 245, 528
Bse1I ACTGG 2 cut(s) 97, 522
BseDI CCNNGG 1 cut(s) 420
BseGI GGATG 2 cut(s) 406, 463
BseLI CCNNNNNNNGG 3 cut(s) 128, 245, 528
BseNI ACTGG 2 cut(s) 97, 522
BseXI GCAGC 2 cut(s) 97, 229
Bsh1236I CGCG 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 542
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 476
BslI CCNNNNNNNGG 3 cut(s) 128, 245, 528
BsmFI GGGAC 1 cut(s) 476
Bsp1286I GDGCHC 2 cut(s) 491, 542
Bsp143I GATC 1 cut(s) 334
BspACI CCGC 2 cut(s) 122, 363
BspFNI CGCG 1 cut(s) 350
BspMAI CTGCAG 1 cut(s) 269
BspQI GCTCTTC 1 cut(s) 165
BsrBI CCGCTC 1 cut(s) 363
BsrI ACTGG 2 cut(s) 97, 522
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 1 cut(s) 334
BssT1I CCWWGG 1 cut(s) 420
Bst4CI ACNGT 1 cut(s) 467
Bst6I CTCTTC 1 cut(s) 165
BstAPI GCANNNNNTGC 2 cut(s) 61, 568
BstDEI CTNAG 1 cut(s) 501
BstF5I GGATG 2 cut(s) 406, 463
BstFNI CGCG 1 cut(s) 350
BstHHI GCGC 1 cut(s) 562
BstKTI GATC 1 cut(s) 337
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 3 cut(s) 61, 446, 568
BstSFI CTRYAG 1 cut(s) 265
BstUI CGCG 1 cut(s) 350
BstV1I GCAGC 2 cut(s) 97, 229
BtsCI GGATG 2 cut(s) 406, 463
BtsI GCAGTG 2 cut(s) 159, 262
BtsIMutI CAGTG 3 cut(s) 159, 262, 472
CfoI GCGC 1 cut(s) 562
CviAII CATG 3 cut(s) 10, 497, 572
CviJI RGCY 9 cut(s) 14, 88, 165, 220, 440, 449, 489, 532, 540
CviKI_1 RGCY 9 cut(s) 14, 88, 165, 220, 440, 449, 489, 532, 540
DdeI CTNAG 1 cut(s) 501
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
DraI TTTAAA 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Ecl136II GAGCTC 1 cut(s) 540
Eco130I CCWWGG 1 cut(s) 420
Eco24I GRGCYC 2 cut(s) 491, 542
Eco53kI GAGCTC 1 cut(s) 540
Eco57I CTGAAG 1 cut(s) 251
EcoICRI GAGCTC 1 cut(s) 540
EcoT14I CCWWGG 1 cut(s) 420
EcoT38I GRGCYC 2 cut(s) 491, 542
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 3 cut(s) 13, 500, 575
FaiI YATR 7 cut(s) 11, 42, 201, 498, 544, 573, 583
FaqI GGGAC 1 cut(s) 476
FatI CATG 3 cut(s) 9, 496, 571
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 2 cut(s) 111, 218
FokI GGATG 2 cut(s) 413, 470
FriOI GRGCYC 2 cut(s) 491, 542
Fsp4HI GCNGC 2 cut(s) 111, 218
FspI TGCGCA 1 cut(s) 561
GlaI GCGC 1 cut(s) 561
GluI GCNGC 2 cut(s) 111, 218
GsuI CTGGAG 1 cut(s) 505
HapII CCGG 1 cut(s) 129
HhaI GCGC 1 cut(s) 562
Hin1II CATG 3 cut(s) 13, 500, 575
Hin6I GCGC 1 cut(s) 560
HinP1I GCGC 1 cut(s) 560
HinfI GANTC 3 cut(s) 137, 146, 259
HpaII CCGG 1 cut(s) 129
HphI GGTGA 3 cut(s) 377, 409, 496
Hpy166II GTNNAC 1 cut(s) 417
Hpy8I GTNNAC 1 cut(s) 417
HpyAV CCTTC 2 cut(s) 155, 419
HpyCH4III ACNGT 1 cut(s) 467
HpyCH4V TGCA 4 cut(s) 64, 267, 435, 571
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 446, 568
HpyF3I CTNAG 1 cut(s) 501
Hsp92II CATG 3 cut(s) 13, 500, 575
HspAI GCGC 1 cut(s) 560
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 1 cut(s) 334
LguI GCTCTTC 1 cut(s) 165
LpnPI CCDG 8 cut(s) 44, 78, 128, 142, 171, 258, 323, 535
Lsp1109I GCAGC 2 cut(s) 97, 229
MaeIII GTNAC 1 cut(s) 256
MalI GATC 1 cut(s) 336
MbiI CCGCTC 1 cut(s) 363
MboI GATC 1 cut(s) 334
MboII GAAGA 3 cut(s) 97, 182, 416
MfeI CAATTG 2 cut(s) 141, 308
MhlI GDGCHC 2 cut(s) 491, 542
MluCI AATT 3 cut(s) 141, 308, 325
MlyI GAGTC 1 cut(s) 253
MmeI TCCRAC 2 cut(s) 358, 454
MnlI CCTC 4 cut(s) 12, 280, 463, 475
MseI TTAA 3 cut(s) 180, 224, 281
MspI CCGG 1 cut(s) 129
MunI CAATTG 2 cut(s) 141, 308
MvnI CGCG 1 cut(s) 350
MwoI GCNNNNNNNGC 3 cut(s) 61, 446, 568
NdeII GATC 1 cut(s) 334
NlaIII CATG 3 cut(s) 13, 500, 575
NmuCI GTSAC 1 cut(s) 256
NsbI TGCGCA 1 cut(s) 561
PciSI GCTCTTC 1 cut(s) 165
PfeI GAWTC 2 cut(s) 137, 146
PkrI GCNGC 2 cut(s) 112, 219
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
Psp124BI GAGCTC 1 cut(s) 542
PstI CTGCAG 1 cut(s) 269
SacI GAGCTC 1 cut(s) 542
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 3 cut(s) 180, 224, 281
SatI GCNGC 2 cut(s) 111, 218
Sau3AI GATC 1 cut(s) 334
SchI GAGTC 1 cut(s) 253
SduI GDGCHC 2 cut(s) 491, 542
SfcI CTRYAG 1 cut(s) 265
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 3 cut(s) 141, 308, 325
SsiI CCGC 2 cut(s) 122, 363
SstI GAGCTC 1 cut(s) 542
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 1 cut(s) 467
TasI AATT 3 cut(s) 141, 308, 325
TfiI GAWTC 2 cut(s) 137, 146
Tru1I TTAA 3 cut(s) 180, 224, 281
Tru9I TTAA 3 cut(s) 180, 224, 281
TscAI CASTG 3 cut(s) 159, 269, 472
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 2 cut(s) 110, 217
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 1 cut(s) 417
TspRI CASTG 3 cut(s) 159, 269, 472
XapI RAATTY 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.