pycom05g28470

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
29180812 .. 29184047
3236 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g28470.1

Sequence Viewer

Length: 837 bp
ATGGGGGACAAGAAACTTCACGTTGCCATGTATCCTTGGTTTGCAATGGGGCACCTGATCGCATTCCTACACACCTGCAACAAATTAGCCGAGAGAGGCCACAGAATCTCCTTCTTTGTCCCCGTCAAAACCCTACAAAAGTTGCAGGCTTTTAATCTCTACCCGGATCGCATTGCCTTCATCCCCATCCATGTCCCTCACGTTGACGGCCTTCCCCCGGGCACTGAAACCACAACTGACGTTCCCTTTCCCCTGCACTCGCTCCTCATGACCGCCATGGACCTCACCAGGCCTGCAGTTGGACAAATCCTCAGGGAACTCAAGCCCGATTTTGTTTTCTTCGACTTCACGCATTGGCTGCCGGAGTTGTTACATGAGCACCCCTCTGTGGGGTGCTTTGTGACCCATTGCGGCTCAGGGTCCTTGTCCGAGGCGCTAGTGAATGACAATGCACGAATGATGGGCTGCGATCTGAAGGTTGGAGTGGAAGTGGAGAAAGGAGACTTAGACGGGCTGTTCACGAAGGAGGGTGTTGCCAAGGCAGTGGAAGCTGTGATGGAGGATGGCAGTGAGGTAGCCGAGGAGGTGAGGAGCAACCATGCAAAATGGAGGGAATTTTTCTCCGGCAAAGGGCTTGGTAACTCTTATTTGGACAGTTTCGAACAAAAGCTACATAAACTGCTTGAAATTATTATTTTGTTCTTTGTTTCAAGCTTTTTTCTTGTGGACATTAGAACATGGGATGGTGGGTATTGGTCTCCTTGCTTTTGTATTTTACGTCGGCGAATGGGAACTATGGGGTTGAATGAAGAAATGATAGCTGGCCATCTCCCATAA

Protein Analysis

279

Amino Acids

31.33

Weight (kDa)

5.94

Isoelectric Point (pI)

34.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 83
AccB1I GGYRCC 1 cut(s) 51
AciI CCGC 2 cut(s) 273, 411
AclWI GGATC 1 cut(s) 174
AcoI YGGCCR 1 cut(s) 823
AcsI RAATTY 1 cut(s) 614
AcuI CTGAAG 1 cut(s) 494
AfiI CCNNNNNNNGG 6 cut(s) 217, 299, 388, 389, 390, 630
AgsI TTSAA 3 cut(s) 686, 711, 805
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 4 cut(s) 551, 670, 714, 821
AluI AGCT 4 cut(s) 551, 670, 714, 821
Alw21I GWGCWC 1 cut(s) 381
Alw26I GTCTC 2 cut(s) 495, 762
AlwI GGATC 1 cut(s) 174
Ama87I CYCGRG 1 cut(s) 217
AoxI GGCC 4 cut(s) 97, 208, 290, 823
ApeKI GCWGC 2 cut(s) 358, 465
ApoI RAATTY 1 cut(s) 614
AspLEI GCGC 1 cut(s) 436
AspS9I GGNCC 2 cut(s) 280, 420
AsuC2I CCSGG 3 cut(s) 164, 218, 219
AsuHPI GGTGA 2 cut(s) 277, 598
AsuII TTCGAA 1 cut(s) 660
AvaI CYCGRG 1 cut(s) 217
AvaII GGWCC 2 cut(s) 280, 420
AxyI CCTNAGG 1 cut(s) 311
BaeGI GKGCMC 2 cut(s) 54, 224
BalI TGGCCA 1 cut(s) 825
BanI GGYRCC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 2 cut(s) 345, 452
BccI CCATC 6 cut(s) 194, 454, 550, 557, 737, 834
BceAI ACGGC 1 cut(s) 223
BciT130I CCWGG 1 cut(s) 289
BciVI GTATCC 1 cut(s) 42
BcnI CCSGG 3 cut(s) 164, 218, 219
BcoDI GTCTC 2 cut(s) 495, 762
BfaI CTAG 1 cut(s) 437
BfmI CTRYAG 1 cut(s) 294
BfoI RGCGCY 1 cut(s) 437
BfuAI ACCTGC 1 cut(s) 83
BfuI GTATCC 1 cut(s) 42
BisI GCNGC 3 cut(s) 359, 412, 466
BlsI GCNGC 3 cut(s) 360, 413, 467
Bme1390I CCNGG 4 cut(s) 164, 218, 219, 289
Bme18I GGWCC 2 cut(s) 280, 420
BmeT110I CYCGRG 1 cut(s) 217
BmgT120I GGNCC 2 cut(s) 280, 420
BmiI GGNNCC 2 cut(s) 53, 421
BmrFI CCNGG 4 cut(s) 164, 218, 219, 289
BplI GAGNNNNNCTC 2 cut(s) 368, 400
Bpu10I CCTNAGC 1 cut(s) 415
Bpu14I TTCGAA 1 cut(s) 660
BpuEI CTTGAG 1 cut(s) 305
BpuMI CCSGG 3 cut(s) 164, 218, 219
BsaI GGTCTC 1 cut(s) 762
BsaJI CCNNGG 7 cut(s) 35, 216, 217, 276, 429, 537, 579
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 474, 504
Bsc4I CCNNNNNNNGG 6 cut(s) 217, 299, 388, 389, 390, 630
Bse21I CCTNAGG 1 cut(s) 311
Bse3DI GCAATG 3 cut(s) 51, 171, 406
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 7 cut(s) 35, 216, 217, 276, 429, 537, 579
BseGI GGATG 4 cut(s) 180, 186, 568, 748
BseLI CCNNNNNNNGG 6 cut(s) 217, 299, 388, 389, 390, 630
BseMI GCAATG 3 cut(s) 51, 171, 406
BseMII CTCAG 2 cut(s) 325, 429
BseRI GAGGAG 3 cut(s) 254, 596, 604
BseSI GKGCMC 2 cut(s) 54, 224
BseXI GCAGC 2 cut(s) 345, 452
BsgI GTGCAG 1 cut(s) 239
BshFI GGCC 4 cut(s) 99, 210, 292, 825
BshNI GGYRCC 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 381
BsiHKCI CYCGRG 1 cut(s) 217
BsiSI CCGG 4 cut(s) 164, 218, 362, 624
BslFI GGGAC 3 cut(s) 20, 104, 179
BslI CCNNNNNNNGG 6 cut(s) 217, 299, 388, 389, 390, 630
BsmAI GTCTC 2 cut(s) 495, 762
BsmFI GGGAC 3 cut(s) 20, 104, 179
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 4 cut(s) 99, 210, 292, 825
Bso31I GGTCTC 1 cut(s) 762
BsoBI CYCGRG 1 cut(s) 217
Bsp119I TTCGAA 1 cut(s) 660
Bsp1286I GDGCHC 3 cut(s) 54, 224, 381
Bsp143I GATC 3 cut(s) 57, 166, 469
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 2 cut(s) 273, 411
BspANI GGCC 4 cut(s) 99, 210, 292, 825
BspCNI CTCAG 2 cut(s) 324, 428
BspHI TCATGA 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 53, 421
BspMAI CTGCAG 1 cut(s) 298
BspMI ACCTGC 1 cut(s) 83
BspPI GGATC 1 cut(s) 174
BspT104I TTCGAA 1 cut(s) 660
BspT107I GGYRCC 1 cut(s) 51
BspTNI GGTCTC 1 cut(s) 762
BsrDI GCAATG 3 cut(s) 51, 171, 406
BssECI CCNNGG 7 cut(s) 35, 216, 217, 276, 429, 537, 579
BssMI GATC 3 cut(s) 57, 166, 469
BssT1I CCWWGG 3 cut(s) 35, 276, 537
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 656
BstAPI GCANNNNNTGC 1 cut(s) 358
BstBI TTCGAA 1 cut(s) 660
BstC8I GCNNGC 3 cut(s) 147, 294, 823
BstDEI CTNAG 3 cut(s) 311, 415, 505
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 4 cut(s) 180, 186, 568, 748
BstH2I RGCGCY 1 cut(s) 437
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 3 cut(s) 60, 169, 472
BstMAI GTCTC 2 cut(s) 495, 762
BstMBI GATC 3 cut(s) 57, 166, 469
BstMWI GCNNNNNNNGC 2 cut(s) 358, 548
BstNI CCWGG 1 cut(s) 289
BstSCI CCNGG 4 cut(s) 162, 216, 217, 287
BstSFI CTRYAG 1 cut(s) 294
BstSLI GKGCMC 2 cut(s) 54, 224
BstV1I GCAGC 2 cut(s) 345, 452
BstXI CCANNNNNNTGG 1 cut(s) 544
Bsu36I CCTNAGG 1 cut(s) 311
BsuI GTATCC 1 cut(s) 42
BsuRI GGCC 4 cut(s) 99, 210, 292, 825
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 4 cut(s) 180, 186, 568, 748
BtsI GCAGTG 2 cut(s) 549, 574
BtsIMutI CAGTG 3 cut(s) 222, 549, 574
BveI ACCTGC 1 cut(s) 83
Cac8I GCNNGC 3 cut(s) 147, 294, 823
CciI TCATGA 1 cut(s) 267
CfoI GCGC 1 cut(s) 436
Cfr13I GGNCC 2 cut(s) 280, 420
Cfr9I CCCGGG 1 cut(s) 217
CviAII CATG 7 cut(s) 28, 191, 268, 277, 374, 599, 738
DdeI CTNAG 3 cut(s) 311, 415, 505
DpnI GATC 3 cut(s) 59, 168, 471
DpnII GATC 3 cut(s) 57, 166, 469
EaeI YGGCCR 1 cut(s) 823
Eco130I CCWWGG 3 cut(s) 35, 276, 537
Eco147I AGGCCT 1 cut(s) 292
Eco31I GGTCTC 1 cut(s) 762
Eco47I GGWCC 2 cut(s) 280, 420
Eco57I CTGAAG 1 cut(s) 494
Eco81I CCTNAGG 1 cut(s) 311
Eco88I CYCGRG 1 cut(s) 217
EcoO109I RGGNCCY 1 cut(s) 420
EcoRII CCWGG 1 cut(s) 287
EcoT14I CCWWGG 3 cut(s) 35, 276, 537
ErhI CCWWGG 3 cut(s) 35, 276, 537
FaeI CATG 7 cut(s) 31, 194, 271, 280, 377, 602, 741
FaqI GGGAC 3 cut(s) 20, 104, 179
FatI CATG 7 cut(s) 27, 190, 267, 276, 373, 598, 737
Fnu4HI GCNGC 3 cut(s) 359, 412, 466
FokI GGATG 4 cut(s) 167, 173, 575, 755
Fsp4HI GCNGC 3 cut(s) 359, 412, 466
FspBI CTAG 1 cut(s) 437
GlaI GCGC 1 cut(s) 435
GluI GCNGC 3 cut(s) 359, 412, 466
HaeII RGCGCY 1 cut(s) 437
HaeIII GGCC 4 cut(s) 99, 210, 292, 825
HapII CCGG 4 cut(s) 164, 218, 362, 624
HhaI GCGC 1 cut(s) 436
Hin1II CATG 7 cut(s) 31, 194, 271, 280, 377, 602, 741
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 712
HinfI GANTC 1 cut(s) 105
HpaII CCGG 4 cut(s) 164, 218, 362, 624
HphI GGTGA 2 cut(s) 277, 598
Hpy166II GTNNAC 3 cut(s) 205, 519, 727
Hpy188I TCNGA 2 cut(s) 430, 474
Hpy188III TCNNGA 2 cut(s) 268, 520
Hpy8I GTNNAC 3 cut(s) 205, 519, 727
Hpy99I CGWCG 1 cut(s) 783
HpyAV CCTTC 5 cut(s) 121, 187, 221, 469, 517
HpyCH4III ACNGT 1 cut(s) 656
HpyCH4IV ACGT 4 cut(s) 21, 201, 240, 778
HpyCH4V TGCA 7 cut(s) 44, 78, 145, 256, 296, 452, 602
HpyF10VI GCNNNNNNNGC 2 cut(s) 358, 548
HpyF3I CTNAG 3 cut(s) 311, 415, 505
HpySE526I ACGT 4 cut(s) 21, 201, 240, 778
Hsp92II CATG 7 cut(s) 31, 194, 271, 280, 377, 602, 741
HspAI GCGC 1 cut(s) 434
Kzo9I GATC 3 cut(s) 57, 166, 469
LmnI GCTCC 2 cut(s) 267, 591
Lsp1109I GCAGC 2 cut(s) 345, 452
MaeI CTAG 1 cut(s) 437
MaeII ACGT 4 cut(s) 21, 201, 240, 778
MaeIII GTNAC 3 cut(s) 369, 400, 638
MalI GATC 3 cut(s) 59, 168, 471
MboI GATC 3 cut(s) 57, 166, 469
MboII GAAGA 2 cut(s) 331, 821
MhlI GDGCHC 3 cut(s) 54, 224, 381
MlsI TGGCCA 1 cut(s) 825
MluCI AATT 3 cut(s) 83, 614, 687
MluNI TGGCCA 1 cut(s) 825
MmeI TCCRAC 2 cut(s) 280, 460
Mox20I TGGCCA 1 cut(s) 825
MscI TGGCCA 1 cut(s) 825
MseI TTAA 1 cut(s) 153
Msp20I TGGCCA 1 cut(s) 825
MspI CCGG 4 cut(s) 164, 218, 362, 624
MspR9I CCNGG 4 cut(s) 164, 218, 219, 289
Mva1269I GAATGC 1 cut(s) 62
MvaI CCWGG 1 cut(s) 289
MwoI GCNNNNNNNGC 2 cut(s) 358, 548
NciI CCSGG 3 cut(s) 164, 218, 219
NcoI CCATGG 1 cut(s) 276
NdeII GATC 3 cut(s) 57, 166, 469
NlaIII CATG 7 cut(s) 31, 194, 271, 280, 377, 602, 741
NlaIV GGNNCC 2 cut(s) 53, 421
NmeAIII GCCGAG 2 cut(s) 115, 604
NmuCI GTSAC 1 cut(s) 400
NspV TTCGAA 1 cut(s) 660
PagI TCATGA 1 cut(s) 267
PaqCI CACCTGC 1 cut(s) 83
PceI AGGCCT 1 cut(s) 292
PctI GAATGC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 105
PkrI GCNGC 3 cut(s) 360, 413, 467
PpuMI RGGWCCY 1 cut(s) 420
Psp5II RGGWCCY 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 2 cut(s) 53, 421
PspPI GGNCC 2 cut(s) 280, 420
PspPPI RGGWCCY 1 cut(s) 420
PsrI GAACNNNNNNTAC 2 cut(s) 654, 686
PstI CTGCAG 1 cut(s) 298
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 3 cut(s) 359, 412, 466
Sau3AI GATC 3 cut(s) 57, 166, 469
Sau96I GGNCC 2 cut(s) 280, 420
ScrFI CCNGG 4 cut(s) 164, 218, 219, 289
SduI GDGCHC 3 cut(s) 54, 224, 381
SfcI CTRYAG 1 cut(s) 294
SfuI TTCGAA 1 cut(s) 660
SinI GGWCC 2 cut(s) 280, 420
SmaI CCCGGG 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 3 cut(s) 83, 614, 687
SseBI AGGCCT 1 cut(s) 292
SsiI CCGC 2 cut(s) 273, 411
SspMI CTAG 1 cut(s) 437
StuI AGGCCT 1 cut(s) 292
StyD4I CCNGG 4 cut(s) 162, 216, 217, 287
StyI CCWWGG 3 cut(s) 35, 276, 537
TaaI ACNGT 1 cut(s) 656
TaiI ACGT 4 cut(s) 24, 204, 243, 781
TaqI TCGA 2 cut(s) 342, 660
TasI AATT 3 cut(s) 83, 614, 687
TauI GCSGC 1 cut(s) 414
TfiI GAWTC 1 cut(s) 105
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 3 cut(s) 229, 549, 574
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 2 cut(s) 358, 465
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 2 cut(s) 169, 822
TspMI CCCGGG 1 cut(s) 217
TspRI CASTG 3 cut(s) 229, 549, 574
VpaK11BI GGWCC 2 cut(s) 280, 420
XapI RAATTY 1 cut(s) 614
XmaI CCCGGG 1 cut(s) 217
XspI CTAG 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.