FvH4_3g08360

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000510
Physical Location & Seq
Reverse (-)
4895566 .. 4896932
1367 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08360.t1

Sequence Viewer

Length: 1290 bp
ATGAGTGACCAAACCTTGCATATTGCCATGTATCCATGGTTTGCTATGGGTCATTTGACTGCATTCCTCCACATCTCCAACAAACTGGCAGAAAGAGGCAACAAGATCTCCTTCTTTTTACCTCTCAAAACTCAATCCAAGTTGCAACACTATAATTTCCACCCTCGTCTCATTACCTTCATTCCCCTCAGTGTCCCTCATGTCGATGGCCTCCCTTTGGGAACTGAAACCACAGCCGATATTGATCTCTCTTTGGGCTCTCTTCTTGCCACCGCCATGGACCTCACTCGACCCCAAATCGAGCAATCTCTCATCGAACTCAAGCCTGACTTTGTGTTCTTCGATCTTAGGTACTGGTTGCCTGCAATGTTGCGTGGACCAACAATGAATATCAAGACAATATATTACTCCGTAATCAATCCTGCAAGTATATGGTTCGGCCTGCGATATCTAGTCCTGTCTAGAAAGAATCAATTGGATGAAGTTGATCATCGTTCATTTTCAATCAAGTTACAAAGTCACGAAGCTCAAGCTTTTGATGCCATGATGAACATGGAATATGGCAGTGAGGTGACATTTGGCAAACGCTTAGAGACCTCTCTCAACGATTCCGGTCATTCTTGCTGGGCCAGTGATGCCGGATCCCCGGATCCCCCGAGTTCACAGTTGGAAGAGAAATGGGCAAGATGGCTTGGAGGGTTCGAACCGAGAACCGTGATTTTCTGTGCTCTTGGATCTGAATACACTCTCACAAAGCAACAACTGCATCAACTATTATTGGGTTTTGAGCTTACTGGTTTCCCATTCTTCGCTGCCCTAAAACCGCCAACCGGAGTTGAATCAATTGAGTCGGCATTGCCAGAAGGGTTTGAAGAGCGTGTGAAAGGAAAAGGAGTGGTTTATGGGAGTTGGGTTCAGCAACCTTTGATACTGAAGCACCCATCTGTGGGTTGCTTCGTGACTCACTGTGGTTCGGGGTCTTTAAATGAGGCGTTGTTGAATGAATGCCAATTGGTGTTTCTACCAAACATAATAGATCAGATCATCAACACAAGAATGATGAGCGATGATTTTAAAGTGGGAGTTGAAGTTGAGAAAGGAGATGAAGATGGCTTGTTCACCAAAGAAGGTGTTTGCAAAGCTGTGAAAGCTGTGATGGATGAGAACAGTGAGGTTGGGAAGGAGGTGAAGACTAACCATACCAAGTGGAGAGAGTTCCTCTCCAGTAAAGGGCTTGAGAGCTCATACATCGATGATTTTGTGCACAAGCTCCATAAACTGCTAGGATGA

Protein Analysis

430

Amino Acids

48.25

Weight (kDa)

5.77

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 303 - 390 2.6e-10 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 273, 824
AclWI GGATC 5 cut(s) 636, 644, 649, 657, 742
AcuI CTGAAG 1 cut(s) 953
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 5 cut(s) 217, 830, 946, 947, 1230
AgsI TTSAA 5 cut(s) 504, 839, 872, 1000, 1088
AjuI GAANNNNNNNTTGG 2 cut(s) 1002, 1034
AluBI AGCT 7 cut(s) 527, 533, 790, 1142, 1151, 1242, 1270
AluI AGCT 7 cut(s) 527, 533, 790, 1142, 1151, 1242, 1270
Alw21I GWGCWC 3 cut(s) 730, 1244, 1266
Alw26I GTCTC 2 cut(s) 173, 587
Alw44I GTGCAC 1 cut(s) 1262
AlwI GGATC 5 cut(s) 636, 644, 649, 657, 742
Ama87I CYCGRG 1 cut(s) 655
AoxI GGCC 3 cut(s) 208, 439, 627
ApaLI GTGCAC 1 cut(s) 1262
ApeKI GCWGC 1 cut(s) 812
AspS9I GGNCC 3 cut(s) 280, 377, 627
AsuC2I CCSGG 1 cut(s) 647
AsuHPI GGTGA 3 cut(s) 583, 1111, 1198
AsuII TTCGAA 1 cut(s) 702
AvaI CYCGRG 1 cut(s) 655
AvaII GGWCC 2 cut(s) 280, 377
BaeGI GKGCMC 1 cut(s) 1266
BamHI GGATCC 2 cut(s) 641, 649
BanII GRGCYC 2 cut(s) 260, 1244
BbsI GAAGAC 1 cut(s) 1196
Bbv12I GWGCWC 3 cut(s) 730, 1244, 1266
BbvI GCAGC 1 cut(s) 799
BccI CCATC 5 cut(s) 200, 681, 949, 1103, 1150
BciVI GTATCC 1 cut(s) 42
BclI TGATCA 1 cut(s) 487
BcnI CCSGG 1 cut(s) 647
BcoDI GTCTC 2 cut(s) 173, 587
BfaI CTAG 3 cut(s) 452, 462, 1283
BfuI GTATCC 1 cut(s) 42
BglII AGATCT 1 cut(s) 105
BisI GCNGC 1 cut(s) 813
BlsI GCNGC 1 cut(s) 814
Bme1390I CCNGG 1 cut(s) 647
Bme18I GGWCC 2 cut(s) 280, 377
BmeT110I CYCGRG 1 cut(s) 655
BmgT120I GGNCC 3 cut(s) 280, 377, 627
BmiI GGNNCC 2 cut(s) 643, 651
BmrFI CCNGG 1 cut(s) 647
BmsI GCATC 3 cut(s) 529, 625, 775
BpiI GAAGAC 1 cut(s) 1196
BplI GAGNNNNNCTC 4 cut(s) 1203, 1235, 1205, 1237
BpmI CTGGAG 1 cut(s) 1207
Bpu14I TTCGAA 1 cut(s) 702
BpuEI CTTGAG 3 cut(s) 305, 513, 1256
BpuMI CCSGG 1 cut(s) 647
Bsa29I ATCGAT 1 cut(s) 1251
BsaBI GATNNNNATC 1 cut(s) 243
BsaI GGTCTC 1 cut(s) 587
BsaJI CCNNGG 3 cut(s) 35, 276, 645
BsaWI WCCGGW 2 cut(s) 611, 830
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 1074, 1104
Bsc4I CCNNNNNNNGG 5 cut(s) 217, 830, 946, 947, 1230
Bse1I ACTGG 5 cut(s) 90, 359, 630, 799, 1224
Bse3DI GCAATG 2 cut(s) 372, 854
Bse8I GATNNNNATC 1 cut(s) 243
BseCI ATCGAT 1 cut(s) 1251
BseDI CCNNGG 3 cut(s) 35, 276, 645
BseGI GGATG 2 cut(s) 484, 1165
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 5 cut(s) 217, 830, 946, 947, 1230
BseMI GCAATG 2 cut(s) 372, 854
BseMII CTCAG 1 cut(s) 202
BseNI ACTGG 5 cut(s) 90, 359, 630, 799, 1224
BseSI GKGCMC 1 cut(s) 1266
BseXI GCAGC 1 cut(s) 799
BseYI CCCAGC 1 cut(s) 624
BshFI GGCC 3 cut(s) 210, 441, 629
BshVI ATCGAT 1 cut(s) 1251
BsiHKAI GWGCWC 3 cut(s) 730, 1244, 1266
BsiHKCI CYCGRG 1 cut(s) 655
BsiSI CCGG 4 cut(s) 612, 639, 647, 831
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 5 cut(s) 217, 830, 946, 947, 1230
BsmAI GTCTC 2 cut(s) 173, 587
BsmBI CGTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 179
BsmI GAATGC 2 cut(s) 62, 1010
BsnI GGCC 3 cut(s) 210, 441, 629
Bso31I GGTCTC 1 cut(s) 587
BsoBI CYCGRG 1 cut(s) 655
Bsp119I TTCGAA 1 cut(s) 702
Bsp1286I GDGCHC 4 cut(s) 260, 730, 1244, 1266
Bsp143I GATC 9 cut(s) 105, 244, 343, 487, 641, 649, 734, 1036, 1041
Bsp19I CCATGG 2 cut(s) 35, 276
BspACI CCGC 2 cut(s) 273, 824
BspANI GGCC 3 cut(s) 210, 441, 629
BspCNI CTCAG 1 cut(s) 201
BspDI ATCGAT 1 cut(s) 1251
BspLI GGNNCC 2 cut(s) 643, 651
BspPI GGATC 5 cut(s) 636, 644, 649, 657, 742
BspQI GCTCTTC 1 cut(s) 867
BspT104I TTCGAA 1 cut(s) 702
BspTNI GGTCTC 1 cut(s) 587
BsrDI GCAATG 2 cut(s) 372, 854
BsrI ACTGG 5 cut(s) 90, 359, 630, 799, 1224
BssECI CCNNGG 3 cut(s) 35, 276, 645
BssMI GATC 9 cut(s) 105, 244, 343, 487, 641, 649, 734, 1036, 1041
BssT1I CCWWGG 2 cut(s) 35, 276
Bst4CI ACNGT 4 cut(s) 666, 715, 968, 1169
Bst6I CTCTTC 3 cut(s) 267, 666, 867
BstAPI GCANNNNNTGC 1 cut(s) 763
BstBI TTCGAA 1 cut(s) 702
BstC8I GCNNGC 2 cut(s) 363, 443
BstDEI CTNAG 3 cut(s) 188, 347, 589
BstDSI CCRYGG 2 cut(s) 35, 276
BstF5I GGATG 2 cut(s) 484, 1165
BstKTI GATC 9 cut(s) 108, 247, 346, 490, 644, 652, 737, 1039, 1044
BstMAI GTCTC 2 cut(s) 173, 587
BstMBI GATC 9 cut(s) 105, 244, 343, 487, 641, 649, 734, 1036, 1041
BstMWI GCNNNNNNNGC 4 cut(s) 539, 635, 763, 1148
BstSCI CCNGG 1 cut(s) 645
BstSLI GKGCMC 1 cut(s) 1266
BstV1I GCAGC 1 cut(s) 799
BstV2I GAAGAC 1 cut(s) 1196
BstX2I RGATCY 4 cut(s) 105, 641, 649, 734
BstXI CCANNNNNNTGG 2 cut(s) 85, 277
BstYI RGATCY 4 cut(s) 105, 641, 649, 734
Bsu15I ATCGAT 1 cut(s) 1251
BsuI GTATCC 1 cut(s) 42
BsuRI GGCC 3 cut(s) 210, 441, 629
BsuTUI ATCGAT 1 cut(s) 1251
BtgI CCRYGG 2 cut(s) 35, 276
BtgZI GCGATG 1 cut(s) 1080
BtsCI GGATG 2 cut(s) 484, 1165
BtsI GCAGTG 1 cut(s) 571
BtsIMutI CAGTG 5 cut(s) 196, 571, 637, 964, 1174
Cac8I GCNNGC 2 cut(s) 363, 443
Cfr13I GGNCC 3 cut(s) 280, 377, 627
ClaI ATCGAT 1 cut(s) 1251
Csp6I GTAC 1 cut(s) 352
CviAII CATG 6 cut(s) 28, 36, 200, 277, 544, 553
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 3 cut(s) 188, 347, 589
DpnI GATC 9 cut(s) 107, 246, 345, 489, 643, 651, 736, 1038, 1043
DpnII GATC 9 cut(s) 105, 244, 343, 487, 641, 649, 734, 1036, 1041
DraI TTTAAA 2 cut(s) 984, 1075
Eam1104I CTCTTC 3 cut(s) 267, 666, 867
EarI CTCTTC 3 cut(s) 267, 666, 867
Ecl136II GAGCTC 1 cut(s) 1242
Eco130I CCWWGG 2 cut(s) 35, 276
Eco24I GRGCYC 2 cut(s) 260, 1244
Eco31I GGTCTC 1 cut(s) 587
Eco32I GATATC 1 cut(s) 449
Eco47I GGWCC 2 cut(s) 280, 377
Eco53kI GAGCTC 1 cut(s) 1242
Eco57I CTGAAG 1 cut(s) 953
Eco88I CYCGRG 1 cut(s) 655
EcoICRI GAGCTC 1 cut(s) 1242
EcoRV GATATC 1 cut(s) 449
EcoT14I CCWWGG 2 cut(s) 35, 276
EcoT38I GRGCYC 2 cut(s) 260, 1244
ErhI CCWWGG 2 cut(s) 35, 276
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 6 cut(s) 31, 39, 203, 280, 547, 556
FalI AAGNNNNNCTT 4 cut(s) 95, 127, 314, 346
FaqI GGGAC 1 cut(s) 179
FatI CATG 6 cut(s) 27, 35, 199, 276, 543, 552
FbaI TGATCA 1 cut(s) 487
Fnu4HI GCNGC 1 cut(s) 813
FokI GGATG 2 cut(s) 491, 1172
FriOI GRGCYC 2 cut(s) 260, 1244
Fsp4HI GCNGC 1 cut(s) 813
FspBI CTAG 3 cut(s) 452, 462, 1283
GluI GCNGC 1 cut(s) 813
GsaI CCCAGC 1 cut(s) 628
GsuI CTGGAG 1 cut(s) 1207
HaeIII GGCC 3 cut(s) 210, 441, 629
HapII CCGG 4 cut(s) 612, 639, 647, 831
Hin1II CATG 6 cut(s) 31, 39, 203, 280, 547, 556
HindIII AAGCTT 1 cut(s) 531
HinfI GANTC 5 cut(s) 469, 608, 839, 848, 961
HpaII CCGG 4 cut(s) 612, 639, 647, 831
HphI GGTGA 3 cut(s) 583, 1111, 1198
Hpy166II GTNNAC 4 cut(s) 377, 662, 1119, 1264
Hpy188I TCNGA 2 cut(s) 739, 1041
Hpy188III TCNNGA 4 cut(s) 394, 462, 521, 958
Hpy8I GTNNAC 4 cut(s) 377, 662, 1119, 1264
HpyAV CCTTC 5 cut(s) 121, 187, 857, 1121, 1174
HpyCH4III ACNGT 4 cut(s) 666, 715, 968, 1169
HpyCH4V TGCA 8 cut(s) 19, 62, 145, 365, 425, 766, 1137, 1264
HpyF10VI GCNNNNNNNGC 4 cut(s) 539, 635, 763, 1148
HpyF3I CTNAG 3 cut(s) 188, 347, 589
Hsp92II CATG 6 cut(s) 31, 39, 203, 280, 547, 556
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 9 cut(s) 105, 244, 343, 487, 641, 649, 734, 1036, 1041
LguI GCTCTTC 1 cut(s) 867
LmnI GCTCC 1 cut(s) 1275
Lsp1109I GCAGC 1 cut(s) 799
LweI GCATC 3 cut(s) 529, 625, 775
MaeI CTAG 3 cut(s) 452, 462, 1283
MaeIII GTNAC 5 cut(s) 5, 510, 518, 571, 958
MalI GATC 9 cut(s) 107, 246, 345, 489, 643, 651, 736, 1038, 1043
MboI GATC 9 cut(s) 105, 244, 343, 487, 641, 649, 734, 1036, 1041
MboII GAAGA 7 cut(s) 254, 331, 683, 799, 884, 1118, 1201
MfeI CAATTG 3 cut(s) 473, 843, 1010
MflI RGATCY 4 cut(s) 105, 641, 649, 734
MhlI GDGCHC 4 cut(s) 260, 730, 1244, 1266
MluCI AATT 4 cut(s) 154, 473, 843, 1010
MlyI GAGTC 2 cut(s) 857, 955
MmeI TCCRAC 2 cut(s) 102, 648
MseI TTAA 2 cut(s) 983, 1074
MslI CAYNNNNRTG 3 cut(s) 204, 275, 1055
MspI CCGG 4 cut(s) 612, 639, 647, 831
MspR9I CCNGG 1 cut(s) 647
MunI CAATTG 3 cut(s) 473, 843, 1010
Mva1269I GAATGC 2 cut(s) 62, 1010
MwoI GCNNNNNNNGC 4 cut(s) 539, 635, 763, 1148
NciI CCSGG 1 cut(s) 647
NcoI CCATGG 2 cut(s) 35, 276
NdeII GATC 9 cut(s) 105, 244, 343, 487, 641, 649, 734, 1036, 1041
NlaIII CATG 6 cut(s) 31, 39, 203, 280, 547, 556
NlaIV GGNNCC 2 cut(s) 643, 651
NmuCI GTSAC 4 cut(s) 5, 518, 571, 958
NspV TTCGAA 1 cut(s) 702
PciSI GCTCTTC 1 cut(s) 867
PctI GAATGC 2 cut(s) 62, 1010
PfeI GAWTC 3 cut(s) 469, 608, 839
PkrI GCNGC 1 cut(s) 814
PleI GAGTC 2 cut(s) 856, 955
PpsI GAGTC 2 cut(s) 856, 955
Psp124BI GAGCTC 1 cut(s) 1244
PspFI CCCAGC 1 cut(s) 624
PspN4I GGNNCC 2 cut(s) 643, 651
PspPI GGNCC 3 cut(s) 280, 377, 627
PsuI RGATCY 4 cut(s) 105, 641, 649, 734
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
RseI CAYNNNNRTG 3 cut(s) 204, 275, 1055
SacI GAGCTC 1 cut(s) 1244
SapI GCTCTTC 1 cut(s) 867
SaqAI TTAA 2 cut(s) 983, 1074
SatI GCNGC 1 cut(s) 813
Sau3AI GATC 9 cut(s) 105, 244, 343, 487, 641, 649, 734, 1036, 1041
Sau96I GGNCC 3 cut(s) 280, 377, 627
SchI GAGTC 2 cut(s) 857, 955
ScrFI CCNGG 1 cut(s) 647
SduI GDGCHC 4 cut(s) 260, 730, 1244, 1266
SfaNI GCATC 3 cut(s) 529, 625, 775
SfuI TTCGAA 1 cut(s) 702
SinI GGWCC 2 cut(s) 280, 377
SmiMI CAYNNNNRTG 3 cut(s) 204, 275, 1055
SmlI CTYRAG 3 cut(s) 320, 528, 1235
SmoI CTYRAG 3 cut(s) 320, 528, 1235
Sse9I AATT 4 cut(s) 154, 473, 843, 1010
SsiI CCGC 2 cut(s) 273, 824
SspMI CTAG 3 cut(s) 452, 462, 1283
SstI GAGCTC 1 cut(s) 1244
StyD4I CCNGG 1 cut(s) 645
StyI CCWWGG 2 cut(s) 35, 276
TaaI ACNGT 4 cut(s) 666, 715, 968, 1169
TaqI TCGA 7 cut(s) 204, 289, 300, 315, 342, 702, 1251
TasI AATT 4 cut(s) 154, 473, 843, 1010
TfiI GAWTC 3 cut(s) 469, 608, 839
Tru1I TTAA 2 cut(s) 983, 1074
Tru9I TTAA 2 cut(s) 983, 1074
TscAI CASTG 5 cut(s) 196, 571, 637, 971, 1174
TseFI GTSAC 4 cut(s) 5, 518, 571, 958
TseI GCWGC 1 cut(s) 812
Tsp45I GTSAC 4 cut(s) 5, 518, 571, 958
TspDTI ATGAA 7 cut(s) 169, 401, 486, 495, 563, 1017, 1119
TspGWI ACGGA 1 cut(s) 400
TspRI CASTG 5 cut(s) 196, 571, 637, 971, 1174
VneI GTGCAC 1 cut(s) 1262
VpaK11BI GGWCC 2 cut(s) 280, 377
XbaI TCTAGA 1 cut(s) 461
XcmI CCANNNNNNNNNTGG 1 cut(s) 550
XspI CTAG 3 cut(s) 452, 462, 1283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.