Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8467919.1

Orthogroup ID

OG0000510

Physical Location & Seq

Genomic Coordinates Forward (+)

40 .. 1368

Gene Structure 1329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8467919.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atgtatccatggtttgctatggggcatttgactgcatatcttcacatctcgaacaaactcgcagagagaggccacaacatctcattctttttgtctctcaaaactcaatccaagttgcagcactataatctccatcctcatctcattacattcattcccctcgatgtccctcatgtcgatggcctccctctggggactgaaaccacagctgacattcctctctctctaggctctcttcttgccaccgccatggacctcacccgaccccaaatcgaacaatatctcctcaaaatcaagattttagttactgttgatcctgtacaccctttgctgtgtttcagtacttcattctcaatcaagttacagactcacgaagctcgagcttttgatgccttggaaaacaaggaatttggcagtgggttgacattcgtcaaacgctgtttgacctctttgagcgattgtgatgcaatttgtttcaaaacttgcagagaattggcagggccagtttgtgactattttgaaatccaaatgaacaagccggtcactcttgcagggccagtggtgccagatgccccaagaaaaggggtggtttatgggggttgggttcagcagcctttgatattgaagcacccatctgtgggttgctttgtgactcactgcgttgaaaaaggagatgaagatggattgttcaccaaggaaggtgtctgtaaagctgtgaaagcagtgatggatgaggacagtgaggtgggaaaggaggtgaggaccaaccatgctaagtggagggagttcttctccaataaagagcttgagagctcatatattgatggttttgtgcagaagctgcatgaactgctgggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00942 map00942

Pfam Domains

Protein Families

UDPGT

Protein Analysis

286

Amino Acids

31.94

Weight (kDa)

6.22

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000510)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica	MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica	Prupe.4G054800_v2.0.a1
pyrus_communis	pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis	RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata	RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora	Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa	Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha	Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana	Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	562
AciI	CCGC	1 cut(s)	246
AclWI	GGATC	1 cut(s)	308
AcsI	RAATTY	1 cut(s)	407
AfaI	GTAC	2 cut(s)	321, 343
AfiI	CCNNNNNNNGG	4 cut(s)	190, 581, 637, 638
AgsI	TTSAA	4 cut(s)	478, 521, 625, 665
AloI	GAACNNNNNNTCC	2 cut(s)	267, 299
AluBI	AGCT	7 cut(s)	209, 377, 383, 713, 805, 813, 841
AluI	AGCT	7 cut(s)	209, 377, 383, 713, 805, 813, 841
Alw21I	GWGCWC	1 cut(s)	815
Alw26I	GTCTC	1 cut(s)	99
AlwI	GGATC	1 cut(s)	308
AlwNI	CAGNNNCTG	1 cut(s)	841
Ama87I	CYCGRG	1 cut(s)	378
AoxI	GGCC	4 cut(s)	70, 181, 500, 554
ApeKI	GCWGC	3 cut(s)	118, 610, 841
ApoI	RAATTY	1 cut(s)	407
AspS9I	GGNCC	4 cut(s)	253, 500, 554, 762
AsuHPI	GGTGA	3 cut(s)	250, 682, 769
AvaI	CYCGRG	1 cut(s)	378
AvaII	GGWCC	2 cut(s)	253, 762
BanI	GGYRCC	1 cut(s)	562
BanII	GRGCYC	1 cut(s)	815
Bbv12I	GWGCWC	1 cut(s)	815
BbvI	GCAGC	3 cut(s)	130, 622, 828
BccI	CCATC	6 cut(s)	141, 173, 640, 674, 721, 818
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BciVI	GTATCC	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	1 cut(s)	227
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	3 cut(s)	119, 611, 842
BlsI	GCNGC	3 cut(s)	120, 612, 843
BmcAI	AGTACT	1 cut(s)	343
Bme18I	GGWCC	2 cut(s)	253, 762
BmeT110I	CYCGRG	1 cut(s)	378
BmgT120I	GGNCC	4 cut(s)	253, 500, 554, 762
BmiI	GGNNCC	1 cut(s)	564
BmsI	GCATC	3 cut(s)	379, 454, 559
BoxI	GACNNNNGTC	1 cut(s)	428
BplI	GAGNNNNNCTC	2 cut(s)	776, 808
BpuEI	CTTGAG	1 cut(s)	827
BsaJI	CCNNGG	4 cut(s)	8, 249, 393, 693
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 581, 637, 638
Bse118I	RCCGGY	1 cut(s)	538
Bse1I	ACTGG	2 cut(s)	503, 557
BseDI	CCNNGG	4 cut(s)	8, 249, 393, 693
BseGI	GGATG	2 cut(s)	133, 736
BseLI	CCNNNNNNNGG	4 cut(s)	190, 581, 637, 638
BseNI	ACTGG	2 cut(s)	503, 557
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	3 cut(s)	130, 622, 828
BseYI	CCCAGC	1 cut(s)	853
BsgI	GTGCAG	1 cut(s)	854
BshFI	GGCC	4 cut(s)	72, 183, 502, 556
BshNI	GGYRCC	1 cut(s)	562
BsiHKAI	GWGCWC	1 cut(s)	815
BsiHKCI	CYCGRG	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	539
BslFI	GGGAC	2 cut(s)	152, 208
BslI	CCNNNNNNNGG	4 cut(s)	190, 581, 637, 638
BsmAI	GTCTC	1 cut(s)	99
BsmFI	GGGAC	2 cut(s)	152, 208
BsnI	GGCC	4 cut(s)	72, 183, 502, 556
BsoBI	CYCGRG	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	815
Bsp1407I	TGTACA	1 cut(s)	319
Bsp143I	GATC	1 cut(s)	313
Bsp19I	CCATGG	2 cut(s)	8, 249
BspACI	CCGC	1 cut(s)	246
BspANI	GGCC	4 cut(s)	72, 183, 502, 556
BspLI	GGNNCC	1 cut(s)	564
BspPI	GGATC	1 cut(s)	308
BspT107I	GGYRCC	1 cut(s)	562
BsrFI	RCCGGY	1 cut(s)	538
BsrGI	TGTACA	1 cut(s)	319
BsrI	ACTGG	2 cut(s)	503, 557
BssAI	RCCGGY	1 cut(s)	538
BssECI	CCNNGG	4 cut(s)	8, 249, 393, 693
BssMI	GATC	1 cut(s)	313
BssT1I	CCWWGG	4 cut(s)	8, 249, 393, 693
Bst4CI	ACNGT	2 cut(s)	310, 740
Bst6I	CTCTTC	1 cut(s)	240
BstAPI	GCANNNNNTGC	2 cut(s)	841, 850
BstAUI	TGTACA	1 cut(s)	319
BstDEI	CTNAG	1 cut(s)	774
BstDSI	CCRYGG	2 cut(s)	8, 249
BstF5I	GGATG	2 cut(s)	133, 736
BstKTI	GATC	1 cut(s)	316
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	5 cut(s)	389, 562, 719, 841, 850
BstPAI	GACNNNNGTC	1 cut(s)	428
BstV1I	GCAGC	3 cut(s)	130, 622, 828
BstXI	CCANNNNNNTGG	1 cut(s)	250
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	4 cut(s)	72, 183, 502, 556
BtgI	CCRYGG	2 cut(s)	8, 249
BtsCI	GGATG	2 cut(s)	133, 736
BtsI	GCAGTG	3 cut(s)	421, 655, 729
BtsIMutI	CAGTG	5 cut(s)	421, 564, 655, 729, 745
CaiI	CAGNNNCTG	1 cut(s)	841
Cfr10I	RCCGGY	1 cut(s)	538
Cfr13I	GGNCC	4 cut(s)	253, 500, 554, 762
Csp6I	GTAC	2 cut(s)	320, 342
CviAII	CATG	5 cut(s)	9, 173, 250, 770, 845
CviQI	GTAC	2 cut(s)	320, 342
DdeI	CTNAG	1 cut(s)	774
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Ecl136II	GAGCTC	1 cut(s)	813
Eco130I	CCWWGG	4 cut(s)	8, 249, 393, 693
Eco24I	GRGCYC	1 cut(s)	815
Eco47I	GGWCC	2 cut(s)	253, 762
Eco53kI	GAGCTC	1 cut(s)	813
Eco88I	CYCGRG	1 cut(s)	378
EcoICRI	GAGCTC	1 cut(s)	813
EcoT14I	CCWWGG	4 cut(s)	8, 249, 393, 693
EcoT38I	GRGCYC	1 cut(s)	815
ErhI	CCWWGG	4 cut(s)	8, 249, 393, 693
FaeI	CATG	5 cut(s)	12, 176, 253, 773, 848
FaqI	GGGAC	2 cut(s)	152, 208
FatI	CATG	5 cut(s)	8, 172, 249, 769, 844
Fnu4HI	GCNGC	3 cut(s)	119, 611, 842
FokI	GGATG	2 cut(s)	120, 743
FriOI	GRGCYC	1 cut(s)	815
Fsp4HI	GCNGC	3 cut(s)	119, 611, 842
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	3 cut(s)	119, 611, 842
GsaI	CCCAGC	1 cut(s)	857
HaeIII	GGCC	4 cut(s)	72, 183, 502, 556
HapII	CCGG	1 cut(s)	539
Hin1II	CATG	5 cut(s)	12, 176, 253, 773, 848
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HinfI	GANTC	2 cut(s)	367, 652
HpaII	CCGG	1 cut(s)	539
HphI	GGTGA	3 cut(s)	250, 682, 769
Hpy166II	GTNNAC	3 cut(s)	322, 423, 690
Hpy188III	TCNNGA	3 cut(s)	49, 295, 371
Hpy8I	GTNNAC	3 cut(s)	322, 423, 690
HpyAV	CCTTC	1 cut(s)	692
HpyCH4III	ACNGT	2 cut(s)	310, 740
HpyCH4V	TGCA	7 cut(s)	35, 118, 467, 486, 551, 835, 844
HpyF10VI	GCNNNNNNNGC	5 cut(s)	389, 562, 719, 841, 850
HpyF3I	CTNAG	1 cut(s)	774
Hsp92II	CATG	5 cut(s)	12, 176, 253, 773, 848
Kzo9I	GATC	1 cut(s)	313
LpnPI	CCDG	9 cut(s)	176, 330, 483, 516, 537, 552, 570, 579, 839
Lsp1109I	GCAGC	3 cut(s)	130, 622, 828
LweI	GCATC	3 cut(s)	379, 454, 559
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	5 cut(s)	304, 360, 509, 541, 649
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	4 cut(s)	32, 227, 689, 781
MhlI	GDGCHC	1 cut(s)	815
MluCI	AATT	3 cut(s)	407, 468, 491
MlyI	GAGTC	2 cut(s)	361, 646
MslI	CAYNNNNRTG	2 cut(s)	177, 248
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	1 cut(s)	539
MwoI	GCNNNNNNNGC	5 cut(s)	389, 562, 719, 841, 850
NcoI	CCATGG	2 cut(s)	8, 249
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	5 cut(s)	12, 176, 253, 773, 848
NlaIV	GGNNCC	1 cut(s)	564
NmuCI	GTSAC	3 cut(s)	509, 541, 649
PaeR7I	CTCGAG	1 cut(s)	378
PkrI	GCNGC	3 cut(s)	120, 612, 843
PleI	GAGTC	2 cut(s)	361, 646
PpsI	GAGTC	2 cut(s)	361, 646
PshAI	GACNNNNGTC	1 cut(s)	428
Psp124BI	GAGCTC	1 cut(s)	815
PspFI	CCCAGC	1 cut(s)	853
PspN4I	GGNNCC	1 cut(s)	564
PspPI	GGNCC	4 cut(s)	253, 500, 554, 762
PspXI	VCTCGAGB	1 cut(s)	378
PstNI	CAGNNNCTG	1 cut(s)	841
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	2 cut(s)	321, 343
RsaNI	GTAC	2 cut(s)	320, 342
RseI	CAYNNNNRTG	2 cut(s)	177, 248
SacI	GAGCTC	1 cut(s)	815
SatI	GCNGC	3 cut(s)	119, 611, 842
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	4 cut(s)	253, 500, 554, 762
ScaI	AGTACT	1 cut(s)	343
SchI	GAGTC	2 cut(s)	361, 646
SduI	GDGCHC	1 cut(s)	815
SfaNI	GCATC	3 cut(s)	379, 454, 559
Sfr274I	CTCGAG	1 cut(s)	378
SinI	GGWCC	2 cut(s)	253, 762
SlaI	CTCGAG	1 cut(s)	378
SmiMI	CAYNNNNRTG	2 cut(s)	177, 248
SmlI	CTYRAG	2 cut(s)	378, 806
SmoI	CTYRAG	2 cut(s)	378, 806
Sse9I	AATT	3 cut(s)	407, 468, 491
SsiI	CCGC	1 cut(s)	246
SspMI	CTAG	1 cut(s)	227
SstI	GAGCTC	1 cut(s)	815
StyI	CCWWGG	4 cut(s)	8, 249, 393, 693
TaaI	ACNGT	2 cut(s)	310, 740
TaqI	TCGA	5 cut(s)	50, 162, 177, 273, 379
TasI	AATT	3 cut(s)	407, 468, 491
TatI	WGTACW	2 cut(s)	319, 341
TscAI	CASTG	5 cut(s)	421, 564, 662, 729, 745
TseFI	GTSAC	3 cut(s)	509, 541, 649
TseI	GCWGC	3 cut(s)	118, 610, 841
Tsp45I	GTSAC	3 cut(s)	509, 541, 649
TspDTI	ATGAA	5 cut(s)	142, 336, 545, 690, 861
TspRI	CASTG	5 cut(s)	421, 564, 662, 729, 745
VpaK11BI	GGWCC	2 cut(s)	253, 762
XapI	RAATTY	1 cut(s)	407
XhoI	CTCGAG	1 cut(s)	378
XspI	CTAG	1 cut(s)	227
ZrmI	AGTACT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.