Rroxscaffold_1G00066590

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000510
Physical Location & Seq
Reverse (-)
88130046 .. 88130732
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00066590.1

Sequence Viewer

Length: 687 bp
ATGGAGCTCACTCGACCCCAAATCGAACAATCTCTCCTCAAACTCAAGCCTGATTTTGTGTTCTTCGATTTTAGTTACTGGTTGCCTGCATTGTTGCGTCAACTAGGCAATAACATTAAGTCAGTAGGTTACTGGGTAATTAATCCTGTAAGTGTGTGGTACCTGCTAAGCCTAGGCCTGCCGAGAAAGATACCATTGGATGATGCTGATGCTGTACCGCCTTTGCTGTGTTTCAGTAGTTCATTCTCAATCAAGTTACGAACTCATGAAGCTCGAGCTTATGATGCCATGGCAAACAAGGAATTTGGCAGCGGATTGAGATTTGGCAAACGCATATTGACCTCTTTCAGCGATTGTGATGCAATTTGTTTCAAAACTTGCAGGGAATTCGCAGGGCCATTTTGTAACTATTTTGAAATCCAAATGAACAAGCCGGTCATTCTTGCAGGCCCAGTGGTGCCAGATCCCCCAACTTCACAGTTGGAAGAGAAATGGGCAAAATGGCTTGGAGGGTTCGAACCAAGAACCGTGATTTTCTGTGCTCTTGGATCTGAATACATTCTCACAAAGCAGCAACTGCAACAACTATTATTGGGTTTTGAGCTTACTGGTTTGCCATTCTTCGCTGCCCTTAAACCGCCAACCGGAGTTGAATCAATTGAATCGGCACTGCCAGAAAGGCTTTGA

Protein Analysis

228

Amino Acids

25.72

Weight (kDa)

6.6

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 171
Acc65I GGTACC 1 cut(s) 159
AccB1I GGYRCC 2 cut(s) 159, 457
AciI CCGC 3 cut(s) 218, 312, 638
AclWI GGATC 2 cut(s) 458, 556
AcsI RAATTY 2 cut(s) 302, 386
AfaI GTAC 2 cut(s) 161, 216
AfiI CCNNNNNNNGG 1 cut(s) 644
AgsI TTSAA 4 cut(s) 373, 416, 653, 662
AloI GAACNNNNNNTCC 2 cut(s) 18, 50
AluBI AGCT 4 cut(s) 7, 272, 278, 604
AluI AGCT 4 cut(s) 7, 272, 278, 604
Alw21I GWGCWC 2 cut(s) 9, 544
AlwI GGATC 2 cut(s) 458, 556
AlwNI CAGNNNCTG 1 cut(s) 577
Ama87I CYCGRG 1 cut(s) 273
AoxI GGCC 3 cut(s) 175, 395, 448
ApeKI GCWGC 3 cut(s) 309, 571, 626
ApoI RAATTY 2 cut(s) 302, 386
AseI ATTAAT 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 558
Asp718I GGTACC 1 cut(s) 159
AspA2I CCTAGG 1 cut(s) 172
AspS9I GGNCC 2 cut(s) 395, 449
AsuII TTCGAA 1 cut(s) 516
AvaI CYCGRG 1 cut(s) 273
AvrII CCTAGG 1 cut(s) 172
BanI GGYRCC 2 cut(s) 159, 457
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 2 cut(s) 9, 544
BbvI GCAGC 3 cut(s) 321, 583, 613
BcgI CGANNNNNNTGC 4 cut(s) 341, 370, 375, 404
BfaI CTAG 2 cut(s) 104, 173
BfuAI ACCTGC 1 cut(s) 171
BglI GCCNNNNNGGC 1 cut(s) 679
BisI GCNGC 3 cut(s) 310, 572, 627
BlnI CCTAGG 1 cut(s) 172
BlpI GCTNAGC 1 cut(s) 167
BlsI GCNGC 3 cut(s) 311, 573, 628
BmeT110I CYCGRG 1 cut(s) 273
BmgT120I GGNCC 2 cut(s) 395, 449
BmiI GGNNCC 2 cut(s) 161, 459
BmrI ACTGGG 2 cut(s) 142, 446
BmsI GCATC 4 cut(s) 193, 199, 274, 349
BmuI ACTGGG 2 cut(s) 142, 446
Bpu1102I GCTNAGC 1 cut(s) 167
Bpu14I TTCGAA 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 29
BsaJI CCNNGG 2 cut(s) 172, 288
BsaWI WCCGGW 1 cut(s) 644
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 1 cut(s) 644
Bse118I RCCGGY 1 cut(s) 433
Bse1I ACTGG 4 cut(s) 83, 137, 452, 613
BseDI CCNNGG 2 cut(s) 172, 288
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 1 cut(s) 644
BseNI ACTGG 4 cut(s) 83, 137, 452, 613
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 3 cut(s) 321, 583, 613
BshFI GGCC 3 cut(s) 177, 397, 450
BshNI GGYRCC 2 cut(s) 159, 457
BsiHKAI GWGCWC 2 cut(s) 9, 544
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 2 cut(s) 434, 645
BslI CCNNNNNNNGG 1 cut(s) 644
BsnI GGCC 3 cut(s) 177, 397, 450
BsoBI CYCGRG 1 cut(s) 273
Bsp119I TTCGAA 1 cut(s) 516
Bsp1286I GDGCHC 2 cut(s) 9, 544
Bsp143I GATC 2 cut(s) 463, 548
Bsp1720I GCTNAGC 1 cut(s) 167
Bsp19I CCATGG 1 cut(s) 288
BspACI CCGC 3 cut(s) 218, 312, 638
BspANI GGCC 3 cut(s) 177, 397, 450
BspHI TCATGA 1 cut(s) 265
BspLI GGNNCC 2 cut(s) 161, 459
BspMI ACCTGC 1 cut(s) 171
BspPI GGATC 2 cut(s) 458, 556
BspT104I TTCGAA 1 cut(s) 516
BspT107I GGYRCC 2 cut(s) 159, 457
BsrFI RCCGGY 1 cut(s) 433
BsrI ACTGG 4 cut(s) 83, 137, 452, 613
BssAI RCCGGY 1 cut(s) 433
BssECI CCNNGG 2 cut(s) 172, 288
BssMI GATC 2 cut(s) 463, 548
BssT1I CCWWGG 2 cut(s) 172, 288
Bst4CI ACNGT 2 cut(s) 480, 529
Bst6I CTCTTC 1 cut(s) 480
BstAPI GCANNNNNTGC 1 cut(s) 577
BstBI TTCGAA 1 cut(s) 516
BstC8I GCNNGC 3 cut(s) 87, 179, 448
BstDEI CTNAG 1 cut(s) 167
BstDSI CCRYGG 1 cut(s) 288
BstF5I GGATG 1 cut(s) 205
BstKTI GATC 2 cut(s) 466, 551
BstMBI GATC 2 cut(s) 463, 548
BstMWI GCNNNNNNNGC 3 cut(s) 284, 577, 679
BstV1I GCAGC 3 cut(s) 321, 583, 613
BstX2I RGATCY 2 cut(s) 463, 548
BstYI RGATCY 2 cut(s) 463, 548
BsuRI GGCC 3 cut(s) 177, 397, 450
BtgI CCRYGG 1 cut(s) 288
BtsCI GGATG 1 cut(s) 205
BtsI GCAGTG 1 cut(s) 668
BtsIMutI CAGTG 2 cut(s) 459, 668
BveI ACCTGC 1 cut(s) 171
Cac8I GCNNGC 3 cut(s) 87, 179, 448
CaiI CAGNNNCTG 1 cut(s) 577
CciI TCATGA 1 cut(s) 265
Cfr10I RCCGGY 1 cut(s) 433
Cfr13I GGNCC 2 cut(s) 395, 449
CseI GACGC 1 cut(s) 86
Csp6I GTAC 2 cut(s) 160, 215
CviAII CATG 2 cut(s) 266, 289
CviQI GTAC 2 cut(s) 160, 215
DdeI CTNAG 1 cut(s) 167
DpnI GATC 2 cut(s) 465, 550
DpnII GATC 2 cut(s) 463, 548
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 2 cut(s) 172, 288
Eco147I AGGCCT 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 9
Eco53kI GAGCTC 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 273
EcoICRI GAGCTC 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 386
EcoT14I CCWWGG 2 cut(s) 172, 288
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 2 cut(s) 172, 288
FaeI CATG 2 cut(s) 269, 292
FaiI YATR 4 cut(s) 267, 282, 290, 335
FatI CATG 2 cut(s) 265, 288
Fnu4HI GCNGC 3 cut(s) 310, 572, 627
FokI GGATG 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 3 cut(s) 310, 572, 627
FspBI CTAG 2 cut(s) 104, 173
GluI GCNGC 3 cut(s) 310, 572, 627
HaeIII GGCC 3 cut(s) 177, 397, 450
HapII CCGG 2 cut(s) 434, 645
HgaI GACGC 1 cut(s) 86
Hin1II CATG 2 cut(s) 269, 292
HincII GTYRAC 1 cut(s) 101
HindII GTYRAC 1 cut(s) 101
HinfI GANTC 2 cut(s) 653, 662
HpaII CCGG 2 cut(s) 434, 645
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 1 cut(s) 553
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 1 cut(s) 101
HpyCH4III ACNGT 2 cut(s) 480, 529
HpyCH4V TGCA 5 cut(s) 89, 362, 381, 446, 580
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 577, 679
HpyF3I CTNAG 1 cut(s) 167
Hsp92II CATG 2 cut(s) 269, 292
KpnI GGTACC 1 cut(s) 163
Kzo9I GATC 2 cut(s) 463, 548
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 3 cut(s) 321, 583, 613
LweI GCATC 4 cut(s) 193, 199, 274, 349
MaeI CTAG 2 cut(s) 104, 173
MaeIII GTNAC 4 cut(s) 74, 128, 255, 404
MalI GATC 2 cut(s) 465, 550
MboI GATC 2 cut(s) 463, 548
MboII GAAGA 3 cut(s) 55, 497, 613
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 2 cut(s) 463, 548
MhlI GDGCHC 2 cut(s) 9, 544
MluCI AATT 5 cut(s) 138, 302, 363, 386, 657
MmeI TCCRAC 1 cut(s) 462
MnlI CCTC 3 cut(s) 47, 352, 503
MroXI GAANNNNTTC 1 cut(s) 558
MseI TTAA 3 cut(s) 117, 141, 633
MspA1I CMGCKG 1 cut(s) 312
MspI CCGG 2 cut(s) 434, 645
MunI CAATTG 1 cut(s) 657
MwoI GCNNNNNNNGC 3 cut(s) 284, 577, 679
NcoI CCATGG 1 cut(s) 288
NdeII GATC 2 cut(s) 463, 548
NlaIII CATG 2 cut(s) 269, 292
NlaIV GGNNCC 2 cut(s) 161, 459
NmeAIII GCCGAG 1 cut(s) 207
NspV TTCGAA 1 cut(s) 516
PaeR7I CTCGAG 1 cut(s) 273
PagI TCATGA 1 cut(s) 265
PceI AGGCCT 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 558
PfeI GAWTC 2 cut(s) 653, 662
PkrI GCNGC 3 cut(s) 311, 573, 628
PshBI ATTAAT 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 9
PspN4I GGNNCC 2 cut(s) 161, 459
PspPI GGNCC 2 cut(s) 395, 449
PspXI VCTCGAGB 1 cut(s) 273
PstNI CAGNNNCTG 1 cut(s) 577
PsuI RGATCY 2 cut(s) 463, 548
RsaI GTAC 2 cut(s) 161, 216
RsaNI GTAC 2 cut(s) 160, 215
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 3 cut(s) 117, 141, 633
SatI GCNGC 3 cut(s) 310, 572, 627
Sau3AI GATC 2 cut(s) 463, 548
Sau96I GGNCC 2 cut(s) 395, 449
SduI GDGCHC 2 cut(s) 9, 544
SetI ASST 7 cut(s) 9, 130, 165, 274, 280, 344, 606
SfaNI GCATC 4 cut(s) 193, 199, 274, 349
Sfr274I CTCGAG 1 cut(s) 273
SfuI TTCGAA 1 cut(s) 516
SlaI CTCGAG 1 cut(s) 273
SmlI CTYRAG 2 cut(s) 44, 273
SmoI CTYRAG 2 cut(s) 44, 273
Sse9I AATT 5 cut(s) 138, 302, 363, 386, 657
SseBI AGGCCT 1 cut(s) 177
SsiI CCGC 3 cut(s) 218, 312, 638
SspMI CTAG 2 cut(s) 104, 173
SstI GAGCTC 1 cut(s) 9
StuI AGGCCT 1 cut(s) 177
StyI CCWWGG 2 cut(s) 172, 288
TaaI ACNGT 2 cut(s) 480, 529
TaqI TCGA 5 cut(s) 13, 24, 66, 274, 516
TasI AATT 5 cut(s) 138, 302, 363, 386, 657
TfiI GAWTC 2 cut(s) 653, 662
Tru1I TTAA 3 cut(s) 117, 141, 633
Tru9I TTAA 3 cut(s) 117, 141, 633
TscAI CASTG 2 cut(s) 459, 675
TseI GCWGC 3 cut(s) 309, 571, 626
TspDTI ATGAA 3 cut(s) 231, 282, 440
TspRI CASTG 2 cut(s) 459, 675
VspI ATTAAT 1 cut(s) 141
XapI RAATTY 2 cut(s) 302, 386
XhoI CTCGAG 1 cut(s) 273
XmaJI CCTAGG 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 558
XspI CTAG 2 cut(s) 104, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.