Rmu_sc0006311.1_g000008

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006311.1
OG0000510
Physical Location & Seq
Reverse (-)
21758 .. 22642
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006311.1_g000008.1.cds

Sequence Viewer

Length: 885 bp
atgcatgaagctgatcgttcctcctcaatcaagttacgaactcacgaagctcgagcttttgatgccatggcaaacatggaatatggtagtggtgtgacattcgccaaacgccactggacctctttcagcaattgtgatgcaatttgtttccaaacttgcagagaattcacagggccattttgtaactatatagaaatacaaatgaacaagccggtcattcttgcagggccagtggtgccagatccgccaagttcacagttggaagagaaatgggtaaaatggcttggagggttcgaacctagaacagtgattttcagtgcttttggcagtgaatgcgttctgaagaaggaacagttccaagagttgttacttggttttgagctaactggtttgccattcttcgctgtcctgaaaccgcaagccggagttgaattaattgactcggtactggcagaaggctttgaagagggtgtaaaaggaaaaggagtggttcatgggggttgggttcagcagccattgatactgaagcacccatctgtgggttgctttgtgactcactgtggttctgggtctttaaacgaggcgttgctgaatgagtgccaattggtgtttctgccaaattgggctgatcaggtaatcaacgcgagaatgatgagcgatgatttgaaagttggagttgaagttgagaaaggggatgaagatggattgttcaccaaggaaggggtttgcaaagctgtgaaagctgtgatggatgagaacagtgaggttggaaaggaggtgaggtccaaccatgctaagtggagggagctcttctccaataaaggaattgacagctcatacattgatggttttctgcagaagctgcatgaagtactgctgggatga

Protein Analysis

294

Amino Acids

32.59

Weight (kDa)

5.27

Isoelectric Point (pI)

38.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 235
AccII CGCG 1 cut(s) 644
AciI CCGC 2 cut(s) 245, 416
AclWI GGATC 1 cut(s) 236
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 2 cut(s) 362, 545
AfaI GTAC 2 cut(s) 447, 873
AfiI CCNNNNNNNGG 4 cut(s) 422, 538, 539, 720
AgsI TTSAA 4 cut(s) 431, 464, 667, 680
AjuI GAANNNNNNNTTGG 2 cut(s) 594, 626
AluBI AGCT 9 cut(s) 11, 50, 56, 382, 734, 743, 808, 834, 862
AluI AGCT 9 cut(s) 11, 50, 56, 382, 734, 743, 808, 834, 862
Alw21I GWGCWC 1 cut(s) 810
AlwI GGATC 1 cut(s) 236
AlwNI CAGNNNCTG 1 cut(s) 862
Ama87I CYCGRG 1 cut(s) 51
AoxI GGCC 2 cut(s) 173, 227
ApeKI GCWGC 2 cut(s) 511, 862
ApoI RAATTY 1 cut(s) 164
AseI ATTAAT 1 cut(s) 434
Asp700I GAANNNNTTC 1 cut(s) 336
AspS9I GGNCC 4 cut(s) 117, 173, 227, 783
AsuHPI GGTGA 2 cut(s) 703, 790
AsuII TTCGAA 1 cut(s) 294
AvaI CYCGRG 1 cut(s) 51
AvaII GGWCC 2 cut(s) 117, 783
BanI GGYRCC 1 cut(s) 235
BanII GRGCYC 1 cut(s) 810
Bbv12I GWGCWC 1 cut(s) 810
BbvI GCAGC 2 cut(s) 523, 849
BccI CCATC 4 cut(s) 541, 695, 742, 839
BclI TGATCA 1 cut(s) 628
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 854
BisI GCNGC 2 cut(s) 512, 863
BlsI GCNGC 2 cut(s) 513, 864
BmcAI AGTACT 1 cut(s) 873
Bme18I GGWCC 2 cut(s) 117, 783
BmeT110I CYCGRG 1 cut(s) 51
BmgT120I GGNCC 4 cut(s) 117, 173, 227, 783
BmiI GGNNCC 1 cut(s) 237
BmsI GCATC 2 cut(s) 52, 127
BplI GAGNNNNNCTC 2 cut(s) 797, 829
Bpu14I TTCGAA 1 cut(s) 294
BsaJI CCNNGG 2 cut(s) 66, 714
BsaXI ACNNNNNCTCC 4 cut(s) 666, 696, 767, 797
Bsc4I CCNNNNNNNGG 4 cut(s) 422, 538, 539, 720
Bse118I RCCGGY 1 cut(s) 211
Bse1I ACTGG 4 cut(s) 119, 230, 391, 453
BseDI CCNNGG 2 cut(s) 66, 714
BseGI GGATG 2 cut(s) 700, 757
BseLI CCNNNNNNNGG 4 cut(s) 422, 538, 539, 720
BseNI ACTGG 4 cut(s) 119, 230, 391, 453
BseRI GAGGAG 1 cut(s) 13
BseXI GCAGC 2 cut(s) 523, 849
BseYI CCCAGC 1 cut(s) 877
Bsh1236I CGCG 1 cut(s) 644
BshFI GGCC 2 cut(s) 175, 229
BshNI GGYRCC 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 810
BsiHKCI CYCGRG 1 cut(s) 51
BsiSI CCGG 2 cut(s) 212, 423
BslI CCNNNNNNNGG 4 cut(s) 422, 538, 539, 720
BsmI GAATGC 1 cut(s) 338
BsnI GGCC 2 cut(s) 175, 229
BsoBI CYCGRG 1 cut(s) 51
Bsp119I TTCGAA 1 cut(s) 294
Bsp1286I GDGCHC 1 cut(s) 810
Bsp143I GATC 3 cut(s) 13, 241, 628
Bsp19I CCATGG 1 cut(s) 66
BspACI CCGC 2 cut(s) 245, 416
BspANI GGCC 2 cut(s) 175, 229
BspFNI CGCG 1 cut(s) 644
BspLI GGNNCC 1 cut(s) 237
BspMAI CTGCAG 1 cut(s) 858
BspPI GGATC 1 cut(s) 236
BspQI GCTCTTC 1 cut(s) 815
BspT104I TTCGAA 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 235
BsrFI RCCGGY 1 cut(s) 211
BsrI ACTGG 4 cut(s) 119, 230, 391, 453
BssAI RCCGGY 1 cut(s) 211
BssECI CCNNGG 2 cut(s) 66, 714
BssMI GATC 3 cut(s) 13, 241, 628
BssT1I CCWWGG 2 cut(s) 66, 714
Bst4CI ACNGT 5 cut(s) 258, 307, 354, 560, 761
Bst6I CTCTTC 3 cut(s) 258, 459, 815
BstAPI GCANNNNNTGC 2 cut(s) 333, 862
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 1 cut(s) 795
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 2 cut(s) 700, 757
BstFNI CGCG 1 cut(s) 644
BstKTI GATC 3 cut(s) 16, 244, 631
BstMBI GATC 3 cut(s) 13, 241, 628
BstMWI GCNNNNNNNGC 6 cut(s) 62, 235, 244, 333, 740, 862
BstSFI CTRYAG 1 cut(s) 854
BstUI CGCG 1 cut(s) 644
BstV1I GCAGC 2 cut(s) 523, 849
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 2 cut(s) 175, 229
BtgI CCRYGG 1 cut(s) 66
BtgZI GCGATG 1 cut(s) 672
BtsCI GGATG 2 cut(s) 700, 757
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 7 cut(s) 112, 237, 312, 322, 334, 556, 766
Cac8I GCNNGC 1 cut(s) 420
CaiI CAGNNNCTG 1 cut(s) 862
Cfr10I RCCGGY 1 cut(s) 211
Cfr13I GGNCC 4 cut(s) 117, 173, 227, 783
Csp6I GTAC 2 cut(s) 446, 872
CviAII CATG 6 cut(s) 5, 67, 76, 494, 791, 866
CviQI GTAC 2 cut(s) 446, 872
DdeI CTNAG 1 cut(s) 795
DpnI GATC 3 cut(s) 15, 243, 630
DpnII GATC 3 cut(s) 13, 241, 628
DraI TTTAAA 1 cut(s) 576
Eam1104I CTCTTC 3 cut(s) 258, 459, 815
EarI CTCTTC 3 cut(s) 258, 459, 815
EciI GGCGGA 1 cut(s) 234
Ecl136II GAGCTC 1 cut(s) 808
Eco130I CCWWGG 2 cut(s) 66, 714
Eco24I GRGCYC 1 cut(s) 810
Eco47I GGWCC 2 cut(s) 117, 783
Eco53kI GAGCTC 1 cut(s) 808
Eco57I CTGAAG 2 cut(s) 362, 545
Eco88I CYCGRG 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 808
EcoRI GAATTC 1 cut(s) 164
EcoT14I CCWWGG 2 cut(s) 66, 714
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 810
ErhI CCWWGG 2 cut(s) 66, 714
FaeI CATG 6 cut(s) 8, 70, 79, 497, 794, 869
FatI CATG 6 cut(s) 4, 66, 75, 493, 790, 865
FbaI TGATCA 1 cut(s) 628
Fnu4HI GCNGC 2 cut(s) 512, 863
FokI GGATG 2 cut(s) 707, 764
FriOI GRGCYC 1 cut(s) 810
Fsp4HI GCNGC 2 cut(s) 512, 863
FspBI CTAG 1 cut(s) 300
GluI GCNGC 2 cut(s) 512, 863
GsaI CCCAGC 1 cut(s) 881
HaeIII GGCC 2 cut(s) 175, 229
HapII CCGG 2 cut(s) 212, 423
Hin1II CATG 6 cut(s) 8, 70, 79, 497, 794, 869
HinfI GANTC 2 cut(s) 440, 553
HpaII CCGG 2 cut(s) 212, 423
HphI GGTGA 2 cut(s) 703, 790
Hpy166II GTNNAC 2 cut(s) 254, 711
Hpy188I TCNGA 1 cut(s) 342
Hpy188III TCNNGA 2 cut(s) 44, 409
Hpy8I GTNNAC 2 cut(s) 254, 711
HpyAV CCTTC 3 cut(s) 340, 449, 713
HpyCH4III ACNGT 5 cut(s) 258, 307, 354, 560, 761
HpyCH4V TGCA 7 cut(s) 4, 140, 159, 224, 729, 856, 865
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 235, 244, 333, 740, 862
HpyF3I CTNAG 1 cut(s) 795
Hsp92II CATG 6 cut(s) 8, 70, 79, 497, 794, 869
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 3 cut(s) 13, 241, 628
LguI GCTCTTC 1 cut(s) 815
LmnI GCTCC 1 cut(s) 805
Lsp1109I GCAGC 2 cut(s) 523, 849
LweI GCATC 2 cut(s) 52, 127
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 5 cut(s) 33, 94, 182, 366, 550
MalI GATC 3 cut(s) 15, 243, 630
MboI GATC 3 cut(s) 13, 241, 628
MboII GAAGA 6 cut(s) 275, 355, 391, 476, 710, 802
MfeI CAATTG 2 cut(s) 130, 602
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 810
MluCI AATT 8 cut(s) 130, 141, 164, 431, 435, 602, 619, 825
MlyI GAGTC 2 cut(s) 434, 547
MmeI TCCRAC 4 cut(s) 240, 652, 748, 810
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 336
MseI TTAA 2 cut(s) 434, 575
MspI CCGG 2 cut(s) 212, 423
MunI CAATTG 2 cut(s) 130, 602
Mva1269I GAATGC 1 cut(s) 338
MvnI CGCG 1 cut(s) 644
MwoI GCNNNNNNNGC 6 cut(s) 62, 235, 244, 333, 740, 862
NcoI CCATGG 1 cut(s) 66
NdeII GATC 3 cut(s) 13, 241, 628
NlaIII CATG 6 cut(s) 8, 70, 79, 497, 794, 869
NlaIV GGNNCC 1 cut(s) 237
NmuCI GTSAC 2 cut(s) 94, 550
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 294
PaeR7I CTCGAG 1 cut(s) 51
PciSI GCTCTTC 1 cut(s) 815
PctI GAATGC 1 cut(s) 338
PdmI GAANNNNTTC 1 cut(s) 336
PkrI GCNGC 2 cut(s) 513, 864
PleI GAGTC 2 cut(s) 434, 547
PpsI GAGTC 2 cut(s) 434, 547
PshBI ATTAAT 1 cut(s) 434
Psp124BI GAGCTC 1 cut(s) 810
PspFI CCCAGC 1 cut(s) 877
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 4 cut(s) 117, 173, 227, 783
PspXI VCTCGAGB 1 cut(s) 51
PstI CTGCAG 1 cut(s) 858
PstNI CAGNNNCTG 1 cut(s) 862
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 2 cut(s) 447, 873
RsaNI GTAC 2 cut(s) 446, 872
SacI GAGCTC 1 cut(s) 810
SapI GCTCTTC 1 cut(s) 815
SaqAI TTAA 2 cut(s) 434, 575
SatI GCNGC 2 cut(s) 512, 863
Sau3AI GATC 3 cut(s) 13, 241, 628
Sau96I GGNCC 4 cut(s) 117, 173, 227, 783
ScaI AGTACT 1 cut(s) 873
SchI GAGTC 2 cut(s) 434, 547
SduI GDGCHC 1 cut(s) 810
SfaNI GCATC 2 cut(s) 52, 127
SfcI CTRYAG 1 cut(s) 854
Sfr274I CTCGAG 1 cut(s) 51
SfuI TTCGAA 1 cut(s) 294
SinI GGWCC 2 cut(s) 117, 783
SlaI CTCGAG 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 51
SmoI CTYRAG 1 cut(s) 51
Sse9I AATT 8 cut(s) 130, 141, 164, 431, 435, 602, 619, 825
SsiI CCGC 2 cut(s) 245, 416
SspMI CTAG 1 cut(s) 300
SstI GAGCTC 1 cut(s) 810
StyI CCWWGG 2 cut(s) 66, 714
TaaI ACNGT 5 cut(s) 258, 307, 354, 560, 761
TaqI TCGA 2 cut(s) 52, 294
TasI AATT 8 cut(s) 130, 141, 164, 431, 435, 602, 619, 825
TatI WGTACW 1 cut(s) 871
Tru1I TTAA 2 cut(s) 434, 575
Tru9I TTAA 2 cut(s) 434, 575
TscAI CASTG 7 cut(s) 119, 237, 312, 322, 334, 563, 766
TseFI GTSAC 2 cut(s) 94, 550
TseI GCWGC 2 cut(s) 511, 862
Tsp45I GTSAC 2 cut(s) 94, 550
TspDTI ATGAA 5 cut(s) 21, 218, 482, 711, 882
TspRI CASTG 7 cut(s) 119, 237, 312, 322, 334, 563, 766
VpaK11BI GGWCC 2 cut(s) 117, 783
VspI ATTAAT 1 cut(s) 434
XapI RAATTY 1 cut(s) 164
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XhoI CTCGAG 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 336
XspI CTAG 1 cut(s) 300
ZrmI AGTACT 1 cut(s) 873
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.