Rmu_co8292439.1_g000001

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8292439.1
Physical Location & Seq
Forward (+)
1 .. 874
874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8292439.1_g000001.1.cds

Sequence Viewer

Length: 818 bp
ttactggttgcctgcattgttgcgtcaactaggcaataacattaagtcagtaggttactgggtaattaatcctgcaagtgtgtggtacctgctaagcctaggcctgccgagaaagataccattggatgatgctgatgctgtaccgcctttgctgtgtttcagtagttcattctcaatcaagttacgaactcatgaagctcgagcttatgatgccatggcaaacaaggaatttggcagcggattgagatttggcaaacgcatattgacctctttcagcgattgtgatgcaatttgtttcaaaacttgcagggaattcgcagggccattttgtaactattttgaaatccaaatgaacaagccggtcattcttgcaggcccagtggtgccagatcccccaagttcacagttggaagagaaatgggcaaaatggcttggagggttcgaaccaagaaccgtgattttctgtgctcttggatctgaatacattctcacaaagcagcaactgcaacaactattattgggttttgagcttactggtttgccattcttcgctgcccttaaaccgccaaccggagttgaatcaattgaatcggcactgccagaaggctttgaaatgcgtctaaaaggaaaaggggtggttcatgggggttgggttcagcagcctttgatactgaagcacccatctgtgggttgctttgtgactcactgcggttcggggtctttaaatgaggcgttagtgaatgagtgccaattggtgcttctcccgcatgtgggagatcatgttatcaacgcgagaatcttgagtggggatttgaagg

Protein Analysis

272

Amino Acids

29.99

Weight (kDa)

7.69

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 97
Acc65I GGTACC 1 cut(s) 85
AccB1I GGYRCC 2 cut(s) 85, 383
AccII CGCG 1 cut(s) 792
AciI CCGC 5 cut(s) 144, 238, 564, 709, 765
AclWI GGATC 2 cut(s) 384, 482
AcsI RAATTY 2 cut(s) 228, 312
AcuI CTGAAG 1 cut(s) 693
AfaI GTAC 2 cut(s) 87, 142
AfiI CCNNNNNNNGG 5 cut(s) 570, 686, 687, 770, 771
AgsI TTSAA 6 cut(s) 299, 342, 579, 588, 612, 815
AjuI GAANNNNNNNTTGG 2 cut(s) 742, 774
AluBI AGCT 3 cut(s) 198, 204, 530
AluI AGCT 3 cut(s) 198, 204, 530
Alw21I GWGCWC 1 cut(s) 470
AlwI GGATC 2 cut(s) 384, 482
AlwNI CAGNNNCTG 1 cut(s) 503
Ama87I CYCGRG 1 cut(s) 199
AoxI GGCC 3 cut(s) 101, 321, 374
ApeKI GCWGC 4 cut(s) 235, 497, 552, 659
ApoI RAATTY 2 cut(s) 228, 312
AseI ATTAAT 1 cut(s) 67
Asp700I GAANNNNTTC 1 cut(s) 484
Asp718I GGTACC 1 cut(s) 85
AspA2I CCTAGG 1 cut(s) 98
AspS9I GGNCC 2 cut(s) 321, 375
AsuII TTCGAA 1 cut(s) 442
AvaI CYCGRG 1 cut(s) 199
AvrII CCTAGG 1 cut(s) 98
BanI GGYRCC 2 cut(s) 85, 383
Bbv12I GWGCWC 1 cut(s) 470
BbvI GCAGC 4 cut(s) 247, 509, 539, 671
BccI CCATC 1 cut(s) 689
BcgI CGANNNNNNTGC 4 cut(s) 267, 296, 301, 330
BfaI CTAG 2 cut(s) 30, 99
BfuAI ACCTGC 1 cut(s) 97
BisI GCNGC 4 cut(s) 236, 498, 553, 660
BlnI CCTAGG 1 cut(s) 98
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 4 cut(s) 237, 499, 554, 661
BmeT110I CYCGRG 1 cut(s) 199
BmgT120I GGNCC 2 cut(s) 321, 375
BmiI GGNNCC 2 cut(s) 87, 385
BmrI ACTGGG 2 cut(s) 68, 372
BmsI GCATC 4 cut(s) 119, 125, 200, 275
BmuI ACTGGG 2 cut(s) 68, 372
Bpu1102I GCTNAGC 1 cut(s) 93
Bpu14I TTCGAA 1 cut(s) 442
BsaJI CCNNGG 2 cut(s) 98, 214
BsaWI WCCGGW 1 cut(s) 570
BsaXI ACNNNNNCTCC 2 cut(s) 766, 796
Bsc4I CCNNNNNNNGG 5 cut(s) 570, 686, 687, 770, 771
Bse118I RCCGGY 1 cut(s) 359
Bse1I ACTGG 4 cut(s) 9, 63, 378, 539
BseDI CCNNGG 2 cut(s) 98, 214
BseGI GGATG 1 cut(s) 131
BseLI CCNNNNNNNGG 5 cut(s) 570, 686, 687, 770, 771
BseNI ACTGG 4 cut(s) 9, 63, 378, 539
BseXI GCAGC 4 cut(s) 247, 509, 539, 671
Bsh1236I CGCG 1 cut(s) 792
BshFI GGCC 3 cut(s) 103, 323, 376
BshNI GGYRCC 2 cut(s) 85, 383
BsiHKAI GWGCWC 1 cut(s) 470
BsiHKCI CYCGRG 1 cut(s) 199
BsiSI CCGG 2 cut(s) 360, 571
BslI CCNNNNNNNGG 5 cut(s) 570, 686, 687, 770, 771
BsnI GGCC 3 cut(s) 103, 323, 376
BsoBI CYCGRG 1 cut(s) 199
Bsp119I TTCGAA 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 470
Bsp143I GATC 3 cut(s) 389, 474, 776
Bsp1720I GCTNAGC 1 cut(s) 93
Bsp19I CCATGG 1 cut(s) 214
BspACI CCGC 5 cut(s) 144, 238, 564, 709, 765
BspANI GGCC 3 cut(s) 103, 323, 376
BspFNI CGCG 1 cut(s) 792
BspHI TCATGA 1 cut(s) 191
BspLI GGNNCC 2 cut(s) 87, 385
BspMI ACCTGC 1 cut(s) 97
BspPI GGATC 2 cut(s) 384, 482
BspT104I TTCGAA 1 cut(s) 442
BspT107I GGYRCC 2 cut(s) 85, 383
BsrFI RCCGGY 1 cut(s) 359
BsrI ACTGG 4 cut(s) 9, 63, 378, 539
BssAI RCCGGY 1 cut(s) 359
BssECI CCNNGG 2 cut(s) 98, 214
BssMI GATC 3 cut(s) 389, 474, 776
BssT1I CCWWGG 2 cut(s) 98, 214
Bst4CI ACNGT 2 cut(s) 406, 455
Bst6I CTCTTC 1 cut(s) 406
BstAPI GCANNNNNTGC 1 cut(s) 503
BstBI TTCGAA 1 cut(s) 442
BstC8I GCNNGC 3 cut(s) 13, 105, 374
BstDEI CTNAG 1 cut(s) 93
BstDSI CCRYGG 1 cut(s) 214
BstF5I GGATG 1 cut(s) 131
BstFNI CGCG 1 cut(s) 792
BstKTI GATC 3 cut(s) 392, 477, 779
BstMBI GATC 3 cut(s) 389, 474, 776
BstMWI GCNNNNNNNGC 3 cut(s) 210, 503, 764
BstNSI RCATGY 1 cut(s) 771
BstUI CGCG 1 cut(s) 792
BstV1I GCAGC 4 cut(s) 247, 509, 539, 671
BstX2I RGATCY 2 cut(s) 389, 474
BstYI RGATCY 2 cut(s) 389, 474
BsuRI GGCC 3 cut(s) 103, 323, 376
BtgI CCRYGG 1 cut(s) 214
BtsCI GGATG 1 cut(s) 131
BtsI GCAGTG 2 cut(s) 594, 704
BtsIMutI CAGTG 3 cut(s) 385, 594, 704
BveI ACCTGC 1 cut(s) 97
Cac8I GCNNGC 3 cut(s) 13, 105, 374
CaiI CAGNNNCTG 1 cut(s) 503
CciI TCATGA 1 cut(s) 191
Cfr10I RCCGGY 1 cut(s) 359
Cfr13I GGNCC 2 cut(s) 321, 375
CseI GACGC 2 cut(s) 12, 606
Csp6I GTAC 2 cut(s) 86, 141
CviAII CATG 5 cut(s) 192, 215, 642, 768, 780
CviQI GTAC 2 cut(s) 86, 141
DdeI CTNAG 1 cut(s) 93
DpnI GATC 3 cut(s) 391, 476, 778
DpnII GATC 3 cut(s) 389, 474, 776
DraI TTTAAA 1 cut(s) 724
Eam1104I CTCTTC 1 cut(s) 406
EarI CTCTTC 1 cut(s) 406
Eco130I CCWWGG 2 cut(s) 98, 214
Eco147I AGGCCT 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 693
Eco88I CYCGRG 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 312
EcoT14I CCWWGG 2 cut(s) 98, 214
ErhI CCWWGG 2 cut(s) 98, 214
FaeI CATG 5 cut(s) 195, 218, 645, 771, 783
FaiI YATR 7 cut(s) 193, 208, 216, 261, 643, 769, 781
FatI CATG 5 cut(s) 191, 214, 641, 767, 779
FauI CCCGC 1 cut(s) 772
Fnu4HI GCNGC 4 cut(s) 236, 498, 553, 660
FokI GGATG 1 cut(s) 138
Fsp4HI GCNGC 4 cut(s) 236, 498, 553, 660
FspBI CTAG 2 cut(s) 30, 99
GluI GCNGC 4 cut(s) 236, 498, 553, 660
HaeIII GGCC 3 cut(s) 103, 323, 376
HapII CCGG 2 cut(s) 360, 571
HgaI GACGC 2 cut(s) 12, 606
Hin1II CATG 5 cut(s) 195, 218, 645, 771, 783
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HinfI GANTC 4 cut(s) 579, 588, 701, 796
HpaII CCGG 2 cut(s) 360, 571
Hpy166II GTNNAC 2 cut(s) 27, 402
Hpy188I TCNGA 1 cut(s) 479
Hpy188III TCNNGA 2 cut(s) 192, 800
Hpy8I GTNNAC 2 cut(s) 27, 402
HpyAV CCTTC 2 cut(s) 597, 809
HpyCH4III ACNGT 2 cut(s) 406, 455
HpyCH4V TGCA 6 cut(s) 15, 75, 288, 307, 372, 506
HpyF10VI GCNNNNNNNGC 3 cut(s) 210, 503, 764
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 5 cut(s) 195, 218, 645, 771, 783
KpnI GGTACC 1 cut(s) 89
Kzo9I GATC 3 cut(s) 389, 474, 776
Lsp1109I GCAGC 4 cut(s) 247, 509, 539, 671
LweI GCATC 4 cut(s) 119, 125, 200, 275
MaeI CTAG 2 cut(s) 30, 99
MaeIII GTNAC 4 cut(s) 54, 181, 330, 698
MalI GATC 3 cut(s) 391, 476, 778
MboI GATC 3 cut(s) 389, 474, 776
MboII GAAGA 2 cut(s) 423, 539
MfeI CAATTG 2 cut(s) 583, 750
MflI RGATCY 2 cut(s) 389, 474
MhlI GDGCHC 1 cut(s) 470
MluCI AATT 6 cut(s) 64, 228, 289, 312, 583, 750
MlyI GAGTC 1 cut(s) 695
MmeI TCCRAC 1 cut(s) 388
MnlI CCTC 3 cut(s) 278, 429, 722
MroXI GAANNNNTTC 1 cut(s) 484
MseI TTAA 4 cut(s) 43, 67, 559, 723
MspA1I CMGCKG 1 cut(s) 238
MspI CCGG 2 cut(s) 360, 571
MunI CAATTG 2 cut(s) 583, 750
MvnI CGCG 1 cut(s) 792
MwoI GCNNNNNNNGC 3 cut(s) 210, 503, 764
NcoI CCATGG 1 cut(s) 214
NdeII GATC 3 cut(s) 389, 474, 776
NlaIII CATG 5 cut(s) 195, 218, 645, 771, 783
NlaIV GGNNCC 2 cut(s) 87, 385
NmeAIII GCCGAG 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 698
NspI RCATGY 1 cut(s) 771
NspV TTCGAA 1 cut(s) 442
PaeR7I CTCGAG 1 cut(s) 199
PagI TCATGA 1 cut(s) 191
PceI AGGCCT 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 484
PfeI GAWTC 3 cut(s) 579, 588, 796
PkrI GCNGC 4 cut(s) 237, 499, 554, 661
PleI GAGTC 1 cut(s) 695
PpsI GAGTC 1 cut(s) 695
PshBI ATTAAT 1 cut(s) 67
PspN4I GGNNCC 2 cut(s) 87, 385
PspPI GGNCC 2 cut(s) 321, 375
PspXI VCTCGAGB 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 503
PsuI RGATCY 2 cut(s) 389, 474
RsaI GTAC 2 cut(s) 87, 142
RsaNI GTAC 2 cut(s) 86, 141
SaqAI TTAA 4 cut(s) 43, 67, 559, 723
SatI GCNGC 4 cut(s) 236, 498, 553, 660
Sau3AI GATC 3 cut(s) 389, 474, 776
Sau96I GGNCC 2 cut(s) 321, 375
SchI GAGTC 1 cut(s) 695
SduI GDGCHC 1 cut(s) 470
SetI ASST 6 cut(s) 56, 91, 200, 206, 270, 532
SfaNI GCATC 4 cut(s) 119, 125, 200, 275
Sfr274I CTCGAG 1 cut(s) 199
SfuI TTCGAA 1 cut(s) 442
SlaI CTCGAG 1 cut(s) 199
SmlI CTYRAG 2 cut(s) 199, 800
SmoI CTYRAG 2 cut(s) 199, 800
Sse9I AATT 6 cut(s) 64, 228, 289, 312, 583, 750
SseBI AGGCCT 1 cut(s) 103
SsiI CCGC 5 cut(s) 144, 238, 564, 709, 765
SspMI CTAG 2 cut(s) 30, 99
StuI AGGCCT 1 cut(s) 103
StyI CCWWGG 2 cut(s) 98, 214
TaaI ACNGT 2 cut(s) 406, 455
TaqI TCGA 2 cut(s) 200, 442
TasI AATT 6 cut(s) 64, 228, 289, 312, 583, 750
TfiI GAWTC 3 cut(s) 579, 588, 796
Tru1I TTAA 4 cut(s) 43, 67, 559, 723
Tru9I TTAA 4 cut(s) 43, 67, 559, 723
TscAI CASTG 3 cut(s) 385, 601, 711
TseFI GTSAC 1 cut(s) 698
TseI GCWGC 4 cut(s) 235, 497, 552, 659
Tsp45I GTSAC 1 cut(s) 698
TspDTI ATGAA 4 cut(s) 157, 208, 366, 630
TspRI CASTG 3 cut(s) 385, 601, 711
VspI ATTAAT 1 cut(s) 67
XapI RAATTY 2 cut(s) 228, 312
XceI RCATGY 1 cut(s) 771
XhoI CTCGAG 1 cut(s) 199
XmaJI CCTAGG 1 cut(s) 98
XmnI GAANNNNTTC 1 cut(s) 484
XspI CTAG 2 cut(s) 30, 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.