Rh5DG071800

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000510
Physical Location & Seq
Forward (+)
6224757 .. 6226363
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG071800.1

Sequence Viewer

Length: 1335 bp
ATGGGACATTTGACCTCTTTTCTCCACATCTCCAACAAACTTGCAGAGAGAGGCCACAAAATCTCCTTCTTTATTCCCATCAAAACACAACCCAAGATGGTGCAATTCAATCTCCATCCAGATCTCATTTCGTTCATCCCCATCAATGTTCCTCATGTTGATGGACTCCCTCCCGGCACCGAAACCACAACCGATATTACTTTCCATTTGCACCCCCATCTTGTCACCGCCATGGACCTAACTCGACCCCAAATTGAACAATCCCTTTGCGAACTCAACCCTAACTTCGTGTTCTTCGATTTCAGTTACTGGTTGCCTGAATTCCTGCGTCAACTAGGTAAGAACATTAAGTCTGTGCATTACTGCACAATTAGTCCTGCAACTGTGGGATACCTGATAAGCCCTGAGAGAAAATTGACGGAGAAAATGCTAACCGAATTTGAATACAGGGAGGCTCCAACTTCATTTCCTTCGTCTTCGATTAAGCTACGAGCCCACGAAGCTCGAGGACTAGTATATGGTGCAAACCAGGAATATGGCCGTGGGATTACATTTCTCAAACGCCAACAGATCAATTTTGGTGATTGTGATGCCATTGCATTTAAAACTTGTAGAGAATTGGAGGGTCCATTTTGTAATTATCTTGAAACCCAATTGAGGAAGCCGGTGATTCTTGCTGGTCCAGTGGTGCCAGAGCCTCCAAGTTCGCAGTTGGAAGAGAAATGGGCAAAATGGCTTGGAGGGTTCGAACCAAGAGCCCTGATTTTCTGTGCTTTTGGAAGTGAATGCATTTTGAAAAAAGAACAATTGCAAGAACTGTTGTTGGGTTTTGAGCTTACTGGTTTGCCTTTCTTCGCTGCACTGAAGCCACCAACCGGAGTTGAATCAATTGAATCAGCATTGCCACAAGGGTTTTTGGAGCGGGTTAAAGGAAAAGGGGTTGTTTATGGGGGTTGGGTTCAGCAGCCTTTGATACTTAAACACCCATCTGTGGGTTGCTTTGTGACTCATTGTGGCTCGGGGTCTTTATCCGAGGCGCTAGTGAATGAGTGTCAATTGGTCCTTCTGCCAAATGTGGGAGATCAGTTCATCAATGCGAGAATGATGAGTGGCGATCTGAAAGTGGGAGTTGAGGTTGAGAAAGGGGATGAAGATGGCTTGTTTAGCAAGGCCGGGGTTTGCAAAGCTGTGAAAGCTGTGATTGATGAGGACAGTGAGATTGGGAAGGAGGTGAGGGCCAACCATGCTAAGTGGAGGGAGTTCTTCTCCAGCAAAGGGCTTGAGAACTCATACATTGATGATTTTGTACACAGGCTCCATAAACTGCTAGGATGA

Protein Analysis

444

Amino Acids

49.66

Weight (kDa)

6.33

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 318 - 405 1.5e-11 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 176, 688
AccBSI CCGCTC 1 cut(s) 922
AciI CCGC 2 cut(s) 228, 922
AcoI YGGCCR 1 cut(s) 538
AcsI RAATTY 2 cut(s) 320, 437
AcuI CTGAAG 1 cut(s) 884
AfaI GTAC 1 cut(s) 1308
AfiI CCNNNNNNNGG 6 cut(s) 657, 875, 991, 992, 1076, 1275
AgsI TTSAA 7 cut(s) 109, 257, 443, 647, 796, 884, 893
AhlI ACTAGT 1 cut(s) 511
AjnI CCWGG 1 cut(s) 528
AluBI AGCT 5 cut(s) 487, 503, 835, 1187, 1196
AluI AGCT 5 cut(s) 487, 503, 835, 1187, 1196
AlwNI CAGNNNCTG 1 cut(s) 309
Ama87I CYCGRG 2 cut(s) 504, 1018
AoxI GGCC 4 cut(s) 52, 538, 1170, 1236
ApeKI GCWGC 2 cut(s) 857, 964
ApoI RAATTY 2 cut(s) 320, 437
AspLEI GCGC 1 cut(s) 1039
AspS9I GGNCC 5 cut(s) 235, 626, 680, 1060, 1236
AsuC2I CCSGG 2 cut(s) 174, 1174
AsuHPI GGTGA 4 cut(s) 217, 593, 679, 1243
AsuII TTCGAA 1 cut(s) 747
AvaI CYCGRG 2 cut(s) 504, 1018
AvaII GGWCC 4 cut(s) 235, 626, 680, 1060
BanI GGYRCC 2 cut(s) 176, 688
BanII GRGCYC 2 cut(s) 496, 760
BbsI GAAGAC 1 cut(s) 468
BbvI GCAGC 2 cut(s) 844, 976
BccI CCATC 8 cut(s) 86, 91, 123, 149, 155, 225, 994, 1148
BceAI ACGGC 1 cut(s) 525
BciT130I CCWGG 1 cut(s) 530
BciVI GTATCC 1 cut(s) 383
BcnI CCSGG 2 cut(s) 174, 1174
BcuI ACTAGT 1 cut(s) 511
BfaI CTAG 4 cut(s) 335, 512, 1040, 1328
BfoI RGCGCY 1 cut(s) 1040
BfuI GTATCC 1 cut(s) 383
BglII AGATCT 1 cut(s) 121
BisI GCNGC 2 cut(s) 858, 965
BlsI GCNGC 2 cut(s) 859, 966
Bme1390I CCNGG 3 cut(s) 174, 530, 1174
Bme18I GGWCC 4 cut(s) 235, 626, 680, 1060
BmeT110I CYCGRG 2 cut(s) 504, 1018
BmgT120I GGNCC 5 cut(s) 235, 626, 680, 1060, 1236
BmiI GGNNCC 5 cut(s) 178, 456, 627, 690, 1316
BmrFI CCNGG 3 cut(s) 174, 530, 1174
BmsI GCATC 1 cut(s) 580
BpiI GAAGAC 1 cut(s) 468
BplI GAGNNNNNCTC 2 cut(s) 1250, 1282
BpmI CTGGAG 1 cut(s) 1252
Bpu14I TTCGAA 1 cut(s) 747
BpuEI CTTGAG 1 cut(s) 1301
BpuMI CCSGG 2 cut(s) 174, 1174
BsaJI CCNNGG 4 cut(s) 231, 541, 1032, 1173
BsaWI WCCGGW 1 cut(s) 875
BsaXI ACNNNNNCTCC 6 cut(s) 47, 77, 1119, 1149, 1299, 1329
Bsc4I CCNNNNNNNGG 6 cut(s) 657, 875, 991, 992, 1076, 1275
Bse118I RCCGGY 1 cut(s) 664
Bse1I ACTGG 3 cut(s) 314, 683, 844
Bse3DI GCAATG 2 cut(s) 594, 899
BseBI CCWGG 1 cut(s) 530
BseDI CCNNGG 4 cut(s) 231, 541, 1032, 1173
BseGI GGATG 3 cut(s) 115, 135, 1153
BseLI CCNNNNNNNGG 6 cut(s) 657, 875, 991, 992, 1076, 1275
BseMI GCAATG 2 cut(s) 594, 899
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 3 cut(s) 314, 683, 844
BseXI GCAGC 2 cut(s) 844, 976
BsgI GTGCAG 2 cut(s) 349, 843
BshFI GGCC 4 cut(s) 54, 540, 1172, 1238
BshNI GGYRCC 2 cut(s) 176, 688
BsiHKCI CYCGRG 2 cut(s) 504, 1018
BsiSI CCGG 4 cut(s) 174, 665, 876, 1173
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 6 cut(s) 657, 875, 991, 992, 1076, 1275
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 791
BsnI GGCC 4 cut(s) 54, 540, 1172, 1238
BsoBI CYCGRG 2 cut(s) 504, 1018
Bsp119I TTCGAA 1 cut(s) 747
Bsp1286I GDGCHC 2 cut(s) 496, 760
Bsp1407I TGTACA 1 cut(s) 1306
Bsp143I GATC 4 cut(s) 121, 570, 1081, 1114
Bsp19I CCATGG 1 cut(s) 231
BspACI CCGC 2 cut(s) 228, 922
BspANI GGCC 4 cut(s) 54, 540, 1172, 1238
BspCNI CTCAG 1 cut(s) 397
BspLI GGNNCC 5 cut(s) 178, 456, 627, 690, 1316
BspT104I TTCGAA 1 cut(s) 747
BspT107I GGYRCC 2 cut(s) 176, 688
BsrBI CCGCTC 1 cut(s) 922
BsrDI GCAATG 2 cut(s) 594, 899
BsrFI RCCGGY 1 cut(s) 664
BsrGI TGTACA 1 cut(s) 1306
BsrI ACTGG 3 cut(s) 314, 683, 844
BssAI RCCGGY 1 cut(s) 664
BssECI CCNNGG 4 cut(s) 231, 541, 1032, 1173
BssMI GATC 4 cut(s) 121, 570, 1081, 1114
BssT1I CCWWGG 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 530
Bst4CI ACNGT 3 cut(s) 385, 819, 1214
Bst6I CTCTTC 1 cut(s) 711
BstAUI TGTACA 1 cut(s) 1306
BstBI TTCGAA 1 cut(s) 747
BstDEI CTNAG 2 cut(s) 405, 1248
BstDSI CCRYGG 2 cut(s) 231, 541
BstF5I GGATG 3 cut(s) 115, 135, 1153
BstH2I RGCGCY 1 cut(s) 1040
BstHHI GCGC 1 cut(s) 1039
BstKTI GATC 4 cut(s) 124, 573, 1084, 1117
BstMBI GATC 4 cut(s) 121, 570, 1081, 1114
BstMWI GCNNNNNNNGC 4 cut(s) 500, 1164, 1193, 1244
BstNI CCWGG 1 cut(s) 530
BstSCI CCNGG 3 cut(s) 172, 528, 1172
BstV1I GCAGC 2 cut(s) 844, 976
BstV2I GAAGAC 1 cut(s) 468
BstX2I RGATCY 1 cut(s) 121
BstXI CCANNNNNNTGG 1 cut(s) 536
BstYI RGATCY 1 cut(s) 121
BsuI GTATCC 1 cut(s) 383
BsuRI GGCC 4 cut(s) 54, 540, 1172, 1238
BtgI CCRYGG 2 cut(s) 231, 541
BtsCI GGATG 3 cut(s) 115, 135, 1153
BtsIMutI CAGTG 3 cut(s) 690, 860, 1219
CaiI CAGNNNCTG 1 cut(s) 309
CfoI GCGC 1 cut(s) 1039
Cfr10I RCCGGY 1 cut(s) 664
Cfr13I GGNCC 5 cut(s) 235, 626, 680, 1060, 1236
CseI GACGC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 1307
CviAII CATG 3 cut(s) 155, 232, 1244
CviQI GTAC 1 cut(s) 1307
DdeI CTNAG 2 cut(s) 405, 1248
DpnI GATC 4 cut(s) 123, 572, 1083, 1116
DpnII GATC 4 cut(s) 121, 570, 1081, 1114
DraI TTTAAA 1 cut(s) 604
EaeI YGGCCR 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 711
EarI CTCTTC 1 cut(s) 711
Eco130I CCWWGG 1 cut(s) 231
Eco24I GRGCYC 2 cut(s) 496, 760
Eco47I GGWCC 4 cut(s) 235, 626, 680, 1060
Eco57I CTGAAG 1 cut(s) 884
Eco88I CYCGRG 2 cut(s) 504, 1018
EcoRI GAATTC 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 528
EcoT14I CCWWGG 1 cut(s) 231
EcoT22I ATGCAT 1 cut(s) 791
EcoT38I GRGCYC 2 cut(s) 496, 760
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 3 cut(s) 158, 235, 1247
FaiI YATR 9 cut(s) 156, 233, 517, 519, 537, 948, 1245, 1291, 1320
FaqI GGGAC 1 cut(s) 18
FatI CATG 3 cut(s) 154, 231, 1243
FauI CCCGC 1 cut(s) 915
Fnu4HI GCNGC 2 cut(s) 858, 965
FokI GGATG 3 cut(s) 102, 122, 1160
FriOI GRGCYC 2 cut(s) 496, 760
Fsp4HI GCNGC 2 cut(s) 858, 965
FspBI CTAG 4 cut(s) 335, 512, 1040, 1328
GlaI GCGC 1 cut(s) 1038
GluI GCNGC 2 cut(s) 858, 965
GsuI CTGGAG 1 cut(s) 1252
HaeII RGCGCY 1 cut(s) 1040
HaeIII GGCC 4 cut(s) 54, 540, 1172, 1238
HapII CCGG 4 cut(s) 174, 665, 876, 1173
HgaI GACGC 1 cut(s) 317
HhaI GCGC 1 cut(s) 1039
Hin1II CATG 3 cut(s) 158, 235, 1247
Hin6I GCGC 1 cut(s) 1037
HinP1I GCGC 1 cut(s) 1037
HincII GTYRAC 1 cut(s) 332
HindII GTYRAC 1 cut(s) 332
HinfI GANTC 5 cut(s) 165, 670, 884, 893, 1006
HpaII CCGG 4 cut(s) 174, 665, 876, 1173
HphI GGTGA 4 cut(s) 217, 593, 679, 1243
Hpy166II GTNNAC 2 cut(s) 332, 1309
Hpy188I TCNGA 2 cut(s) 1033, 1119
Hpy188III TCNNGA 2 cut(s) 119, 644
Hpy8I GTNNAC 2 cut(s) 332, 1309
HpyAV CCTTC 4 cut(s) 76, 480, 1073, 1219
HpyCH4III ACNGT 3 cut(s) 385, 819, 1214
HpyF10VI GCNNNNNNNGC 4 cut(s) 500, 1164, 1193, 1244
HpyF3I CTNAG 2 cut(s) 405, 1248
Hsp92II CATG 3 cut(s) 158, 235, 1247
HspAI GCGC 1 cut(s) 1037
Kzo9I GATC 4 cut(s) 121, 570, 1081, 1114
LmnI GCTCC 3 cut(s) 460, 919, 1320
Lsp1109I GCAGC 2 cut(s) 844, 976
LweI GCATC 1 cut(s) 580
MaeI CTAG 4 cut(s) 335, 512, 1040, 1328
MaeIII GTNAC 3 cut(s) 223, 305, 1003
MalI GATC 4 cut(s) 123, 572, 1083, 1116
MbiI CCGCTC 1 cut(s) 922
MboI GATC 4 cut(s) 121, 570, 1081, 1114
MboII GAAGA 6 cut(s) 286, 468, 728, 844, 1163, 1255
MfeI CAATTG 4 cut(s) 653, 806, 888, 1055
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 2 cut(s) 496, 760
MlyI GAGTC 2 cut(s) 159, 1000
MmeI TCCRAC 3 cut(s) 57, 482, 693
Mph1103I ATGCAT 1 cut(s) 791
MseI TTAA 5 cut(s) 348, 483, 603, 927, 978
MslI CAYNNNNRTG 2 cut(s) 159, 230
MspI CCGG 4 cut(s) 174, 665, 876, 1173
MspR9I CCNGG 3 cut(s) 174, 530, 1174
MunI CAATTG 4 cut(s) 653, 806, 888, 1055
Mva1269I GAATGC 1 cut(s) 791
MvaI CCWGG 1 cut(s) 530
MwoI GCNNNNNNNGC 4 cut(s) 500, 1164, 1193, 1244
NciI CCSGG 2 cut(s) 174, 1174
NcoI CCATGG 1 cut(s) 231
NdeII GATC 4 cut(s) 121, 570, 1081, 1114
NlaIII CATG 3 cut(s) 158, 235, 1247
NlaIV GGNNCC 5 cut(s) 178, 456, 627, 690, 1316
NmuCI GTSAC 2 cut(s) 223, 1003
NsiI ATGCAT 1 cut(s) 791
NspV TTCGAA 1 cut(s) 747
PaeR7I CTCGAG 1 cut(s) 504
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PctI GAATGC 1 cut(s) 791
PfeI GAWTC 3 cut(s) 670, 884, 893
PkrI GCNGC 2 cut(s) 859, 966
PleI GAGTC 2 cut(s) 159, 1000
PpsI GAGTC 2 cut(s) 159, 1000
Psp6I CCWGG 1 cut(s) 528
PspGI CCWGG 1 cut(s) 528
PspN4I GGNNCC 5 cut(s) 178, 456, 627, 690, 1316
PspPI GGNCC 5 cut(s) 235, 626, 680, 1060, 1236
PspXI VCTCGAGB 1 cut(s) 504
PstNI CAGNNNCTG 1 cut(s) 309
PsuI RGATCY 1 cut(s) 121
RsaI GTAC 1 cut(s) 1308
RsaNI GTAC 1 cut(s) 1307
RseI CAYNNNNRTG 2 cut(s) 159, 230
SaqAI TTAA 5 cut(s) 348, 483, 603, 927, 978
SatI GCNGC 2 cut(s) 858, 965
Sau3AI GATC 4 cut(s) 121, 570, 1081, 1114
Sau96I GGNCC 5 cut(s) 235, 626, 680, 1060, 1236
SchI GAGTC 2 cut(s) 159, 1000
ScrFI CCNGG 3 cut(s) 174, 530, 1174
SduI GDGCHC 2 cut(s) 496, 760
SfaNI GCATC 1 cut(s) 580
Sfr274I CTCGAG 1 cut(s) 504
SfuI TTCGAA 1 cut(s) 747
SinI GGWCC 4 cut(s) 235, 626, 680, 1060
SlaI CTCGAG 1 cut(s) 504
SmiMI CAYNNNNRTG 2 cut(s) 159, 230
SmlI CTYRAG 2 cut(s) 504, 1280
SmoI CTYRAG 2 cut(s) 504, 1280
SpeI ACTAGT 1 cut(s) 511
SsiI CCGC 2 cut(s) 228, 922
SspMI CTAG 4 cut(s) 335, 512, 1040, 1328
StyD4I CCNGG 3 cut(s) 172, 528, 1172
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 3 cut(s) 385, 819, 1214
TaqI TCGA 5 cut(s) 244, 297, 479, 505, 747
TatI WGTACW 1 cut(s) 1306
TfiI GAWTC 3 cut(s) 670, 884, 893
Tru1I TTAA 5 cut(s) 348, 483, 603, 927, 978
Tru9I TTAA 5 cut(s) 348, 483, 603, 927, 978
TscAI CASTG 3 cut(s) 690, 867, 1219
TseFI GTSAC 2 cut(s) 223, 1003
TseI GCWGC 2 cut(s) 857, 964
Tsp45I GTSAC 2 cut(s) 223, 1003
TspDTI ATGAA 4 cut(s) 124, 453, 1078, 1164
TspGWI ACGGA 1 cut(s) 434
TspRI CASTG 3 cut(s) 690, 867, 1219
VpaK11BI GGWCC 4 cut(s) 235, 626, 680, 1060
XapI RAATTY 2 cut(s) 320, 437
XhoI CTCGAG 1 cut(s) 504
XspI CTAG 4 cut(s) 335, 512, 1040, 1328
Zsp2I ATGCAT 1 cut(s) 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.