Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002711.1

Orthogroup ID

OG0000510

Physical Location & Seq

Genomic Coordinates Reverse (-)

11755 .. 12627

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002711.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgtggtacgccttgcgaagtctaggcctgcctagaaaaaatcaattggatgaagctgagtgttcattctcattacgaactcatgaagctcgagcatttgatgccatgatgaacatggaatacggcagtgaggtaacattcagcaaacgcctattgaccgctttaagcgattgtgatgcaatatgtttccaaagttgcagagaattcgcaggaccgttttgtaactatattgaactccaaatgaacaagccagtgattcttgcagggccagtgatgccagatcccccgagttcacagttggaagagaaatgggcaacatggcttggagggttcaaacccagaaccgtgatattctgtgctcttggaacagaaaatattctcacaaagcaacaactgcaacaactattattgggttttgagcttactggtttgccattcttcgctgccctgaaaccgccaaccggagttgaatcaattgaatcggcagtgccagaaggctttgaagagcgtgttaaagaaaaaggggttgtatatgggggttgggttcagcagcctttaatactgaagcacccatcaataggttgctttgtgactcactgcagttcagggtctttaaacgaggcgttgctgaatgagtgccaattggtgtttctgccaaatttgattgatcaggtaatcaacgcgagaatgatgagcggtgatttgaaagttggagttgaagttgagaaaggggatgaagatggattgttcaccaaggaaggtgtctgcaaagctgtgagagctgtgatggatggggacagtgaggttggaaaggaggtgagccccaaccatgctaagtggagagagtttaggaaggtgtctgcaaagctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00942 map00942

Pfam Domains

Protein Families

UDPGT

Protein Analysis

290

Amino Acids

32.19

Weight (kDa)

5.31

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000510)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica	MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica	Prupe.4G054800_v2.0.a1
pyrus_communis	pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis	RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata	RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora	Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa	Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha	Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana	Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	696
AccII	CGCG	1 cut(s)	683
AciI	CCGC	3 cut(s)	159, 455, 696
AclWI	GGATC	1 cut(s)	275
AcsI	RAATTY	2 cut(s)	203, 658
AcuI	CTGAAG	1 cut(s)	584
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	461, 578
AgsI	TTSAA	7 cut(s)	233, 334, 470, 479, 503, 706, 719
AjuI	GAANNNNNNNTTGG	2 cut(s)	633, 665
AluBI	AGCT	6 cut(s)	56, 89, 421, 773, 782, 868
AluI	AGCT	6 cut(s)	56, 89, 421, 773, 782, 868
Alw21I	GWGCWC	1 cut(s)	361
AlwI	GGATC	1 cut(s)	275
Ama87I	CYCGRG	2 cut(s)	90, 286
AoxI	GGCC	2 cut(s)	25, 266
ApeKI	GCWGC	2 cut(s)	443, 550
ApoI	RAATTY	2 cut(s)	203, 658
Asp700I	GAANNNNTTC	1 cut(s)	375
AspS9I	GGNCC	2 cut(s)	212, 266
AsuHPI	GGTGA	3 cut(s)	710, 742, 829
AvaI	CYCGRG	2 cut(s)	90, 286
AvaII	GGWCC	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	824
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	2 cut(s)	430, 562
BccI	CCATC	4 cut(s)	580, 734, 781, 785
BceAI	ACGGC	1 cut(s)	139
BcgI	CGANNNNNNTGC	4 cut(s)	158, 187, 192, 221
BclI	TGATCA	1 cut(s)	667
BfaI	CTAG	2 cut(s)	23, 33
BfmI	CTRYAG	1 cut(s)	598
BisI	GCNGC	2 cut(s)	444, 551
BlsI	GCNGC	2 cut(s)	445, 552
Bme18I	GGWCC	1 cut(s)	212
BmeT110I	CYCGRG	2 cut(s)	90, 286
BmgT120I	GGNCC	2 cut(s)	212, 266
BmsI	GCATC	3 cut(s)	91, 166, 264
BsaJI	CCNNGG	1 cut(s)	753
BsaWI	WCCGGW	1 cut(s)	461
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	2 cut(s)	461, 578
Bse1I	ACTGG	3 cut(s)	251, 269, 430
BseDI	CCNNGG	1 cut(s)	753
BseGI	GGATG	3 cut(s)	55, 739, 796
BseLI	CCNNNNNNNGG	2 cut(s)	461, 578
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	3 cut(s)	251, 269, 430
BseXI	GCAGC	2 cut(s)	430, 562
Bsh1236I	CGCG	1 cut(s)	683
BshFI	GGCC	2 cut(s)	27, 268
BsiHKAI	GWGCWC	1 cut(s)	361
BsiHKCI	CYCGRG	2 cut(s)	90, 286
BsiSI	CCGG	1 cut(s)	462
BslFI	GGGAC	1 cut(s)	809
BslI	CCNNNNNNNGG	2 cut(s)	461, 578
BsmFI	GGGAC	1 cut(s)	809
BsnI	GGCC	2 cut(s)	27, 268
BsoBI	CYCGRG	2 cut(s)	90, 286
Bsp1286I	GDGCHC	2 cut(s)	361, 824
Bsp143I	GATC	2 cut(s)	280, 667
BspACI	CCGC	3 cut(s)	159, 455, 696
BspANI	GGCC	2 cut(s)	27, 268
BspCNI	CTCAG	1 cut(s)	49
BspFNI	CGCG	1 cut(s)	683
BspHI	TCATGA	1 cut(s)	82
BspMAI	CTGCAG	1 cut(s)	602
BspPI	GGATC	1 cut(s)	275
BspQI	GCTCTTC	1 cut(s)	498
BsrBI	CCGCTC	1 cut(s)	696
BsrI	ACTGG	3 cut(s)	251, 269, 430
BssECI	CCNNGG	1 cut(s)	753
BssMI	GATC	2 cut(s)	280, 667
BssT1I	CCWWGG	1 cut(s)	753
Bst4CI	ACNGT	4 cut(s)	216, 297, 346, 800
Bst6I	CTCTTC	2 cut(s)	297, 498
BstAPI	GCANNNNNTGC	2 cut(s)	101, 394
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	2 cut(s)	57, 834
BstF5I	GGATG	3 cut(s)	55, 739, 796
BstFNI	CGCG	1 cut(s)	683
BstKTI	GATC	2 cut(s)	283, 670
BstMBI	GATC	2 cut(s)	280, 667
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 274, 394, 779
BstSFI	CTRYAG	1 cut(s)	598
BstUI	CGCG	1 cut(s)	683
BstV1I	GCAGC	2 cut(s)	430, 562
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	27, 268
BtsCI	GGATG	3 cut(s)	55, 739, 796
BtsI	GCAGTG	3 cut(s)	133, 492, 595
BtsIMutI	CAGTG	6 cut(s)	133, 258, 276, 492, 595, 805
Cac8I	GCNNGC	1 cut(s)	29
CciI	TCATGA	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	212, 266
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	5 cut(s)	83, 106, 115, 318, 830
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	2 cut(s)	57, 834
DpnI	GATC	2 cut(s)	282, 669
DpnII	GATC	2 cut(s)	280, 667
DraI	TTTAAA	1 cut(s)	615
Eam1104I	CTCTTC	2 cut(s)	297, 498
EarI	CTCTTC	2 cut(s)	297, 498
Eco130I	CCWWGG	1 cut(s)	753
Eco147I	AGGCCT	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	824
Eco47I	GGWCC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	584
Eco88I	CYCGRG	2 cut(s)	90, 286
EcoRI	GAATTC	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	753
EcoT38I	GRGCYC	1 cut(s)	824
ErhI	CCWWGG	1 cut(s)	753
FaeI	CATG	5 cut(s)	86, 109, 118, 321, 833
FaiI	YATR	9 cut(s)	84, 107, 116, 184, 228, 319, 532, 534, 831
FaqI	GGGAC	1 cut(s)	809
FatI	CATG	5 cut(s)	82, 105, 114, 317, 829
FbaI	TGATCA	1 cut(s)	667
Fnu4HI	GCNGC	2 cut(s)	444, 551
FokI	GGATG	3 cut(s)	62, 746, 803
FriOI	GRGCYC	1 cut(s)	824
Fsp4HI	GCNGC	2 cut(s)	444, 551
FspBI	CTAG	2 cut(s)	23, 33
GluI	GCNGC	2 cut(s)	444, 551
HaeIII	GGCC	2 cut(s)	27, 268
HapII	CCGG	1 cut(s)	462
Hin1II	CATG	5 cut(s)	86, 109, 118, 321, 833
HinfI	GANTC	4 cut(s)	256, 470, 479, 592
HpaII	CCGG	1 cut(s)	462
HphI	GGTGA	3 cut(s)	710, 742, 829
Hpy166II	GTNNAC	2 cut(s)	293, 750
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	2 cut(s)	293, 750
HpyAV	CCTTC	3 cut(s)	488, 752, 847
HpyCH4III	ACNGT	4 cut(s)	216, 297, 346, 800
HpyCH4V	TGCA	7 cut(s)	179, 198, 263, 397, 600, 768, 863
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 274, 394, 779
HpyF3I	CTNAG	2 cut(s)	57, 834
Hsp92II	CATG	5 cut(s)	86, 109, 118, 321, 833
Ksp22I	TGATCA	1 cut(s)	667
Kzo9I	GATC	2 cut(s)	280, 667
LguI	GCTCTTC	1 cut(s)	498
Lsp1109I	GCAGC	2 cut(s)	430, 562
LweI	GCATC	3 cut(s)	91, 166, 264
MaeI	CTAG	2 cut(s)	23, 33
MaeIII	GTNAC	3 cut(s)	133, 221, 589
MalI	GATC	2 cut(s)	282, 669
MbiI	CCGCTC	1 cut(s)	696
MboI	GATC	2 cut(s)	280, 667
MboII	GAAGA	4 cut(s)	314, 430, 515, 749
MfeI	CAATTG	3 cut(s)	44, 474, 641
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	2 cut(s)	361, 824
MluCI	AATT	5 cut(s)	44, 203, 474, 641, 658
MlyI	GAGTC	1 cut(s)	586
MmeI	TCCRAC	3 cut(s)	279, 691, 787
MnlI	CCTC	5 cut(s)	124, 320, 613, 796, 808
MroXI	GAANNNNTTC	1 cut(s)	375
MseI	TTAA	4 cut(s)	164, 513, 557, 614
MspI	CCGG	1 cut(s)	462
MunI	CAATTG	3 cut(s)	44, 474, 641
MvnI	CGCG	1 cut(s)	683
MwoI	GCNNNNNNNGC	4 cut(s)	101, 274, 394, 779
NdeII	GATC	2 cut(s)	280, 667
NlaIII	CATG	5 cut(s)	86, 109, 118, 321, 833
NmuCI	GTSAC	1 cut(s)	589
PaeR7I	CTCGAG	1 cut(s)	90
PagI	TCATGA	1 cut(s)	82
PceI	AGGCCT	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	498
PdmI	GAANNNNTTC	1 cut(s)	375
PfeI	GAWTC	3 cut(s)	256, 470, 479
PkrI	GCNGC	2 cut(s)	445, 552
PleI	GAGTC	1 cut(s)	586
PpsI	GAGTC	1 cut(s)	586
PspPI	GGNCC	2 cut(s)	212, 266
PspXI	VCTCGAGB	1 cut(s)	90
PsrI	GAACNNNNNNTAC	2 cut(s)	104, 136
PstI	CTGCAG	1 cut(s)	602
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SapI	GCTCTTC	1 cut(s)	498
SaqAI	TTAA	4 cut(s)	164, 513, 557, 614
SatI	GCNGC	2 cut(s)	444, 551
Sau3AI	GATC	2 cut(s)	280, 667
Sau96I	GGNCC	2 cut(s)	212, 266
SchI	GAGTC	1 cut(s)	586
SduI	GDGCHC	2 cut(s)	361, 824
SfaNI	GCATC	3 cut(s)	91, 166, 264
SfcI	CTRYAG	1 cut(s)	598
Sfr274I	CTCGAG	1 cut(s)	90
SinI	GGWCC	1 cut(s)	212
SlaI	CTCGAG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	5 cut(s)	44, 203, 474, 641, 658
SseBI	AGGCCT	1 cut(s)	27
SsiI	CCGC	3 cut(s)	159, 455, 696
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	2 cut(s)	23, 33
StuI	AGGCCT	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	753
TaaI	ACNGT	4 cut(s)	216, 297, 346, 800
TaqI	TCGA	1 cut(s)	91
TasI	AATT	5 cut(s)	44, 203, 474, 641, 658
TfiI	GAWTC	3 cut(s)	256, 470, 479
Tru1I	TTAA	4 cut(s)	164, 513, 557, 614
Tru9I	TTAA	4 cut(s)	164, 513, 557, 614
TscAI	CASTG	6 cut(s)	133, 258, 276, 492, 602, 805
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	2 cut(s)	443, 550
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	6 cut(s)	54, 66, 99, 125, 257, 750
TspRI	CASTG	6 cut(s)	133, 258, 276, 492, 602, 805
VpaK11BI	GGWCC	1 cut(s)	212
XapI	RAATTY	2 cut(s)	203, 658
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XhoI	CTCGAG	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	2 cut(s)	23, 33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.