Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001211

Physical Location & Seq

Genomic Coordinates Reverse (-)

17023825 .. 17024996

Gene Structure 1172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1195500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCCATCACTGAAGGGTTTAAAGAGTTCACTGATTTGGTTAGAATGCAAGCTTTGATTTTGATAGAGAACAAGGCCTCCCAGAGAGTCTTGGAGAAACTTGGTTTCCACATGGAAGGTCTCTTGAGGGAGTATACCATTCACAAAGTTATGGAGTCCTCAAGAATTTCACTGCGTCCCTTCAAAGTCTCCGATGCCGATGACTTCTTGAAATGGGCGAGTGATGACAAAGTGACGCGCTATTTGAGATGGAACACCATAACCTCTAGGGAAGAAGCCTTGGCATACATTGAGAAGGTTGCTATACCACACCCATGGCGCCAGTCCATATGTCTGGATGACCATTCGATTGGATATGTTTCGGTCAAACCCGAACCGGGCGATGACACGTGTAGAGCCCATGTTAGCTATGCCGTGTCTGCAGAATACTGGGGACAAGGGATTGCCAAACAGGCACTGAGGATGGCCATGTCTAGAGTGTACAAAGAGTTCCCATGTTTGGTGAGGGTTGAGGCTTTGGTGGAGGTTGAGAATAAGGGTTCCCAAATGGTTTTAGAGAAAGTTGGGTTTGTGAAAGAAGGTTTGTTAAGGAAGTATGGTTATTGTAAAGGTGAGATTAGAGACATGTTTATCTACAGCTTCTTATCAACTGATAAGATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_3

Protein Analysis

222

Amino Acids

25.52

Weight (kDa)

7.66

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_3	PF13302	55 - 191	1.2e-24	Acetyltransferase (GNAT) domain
Acetyltransf_1	PF00583	104 - 190	2.8e-10	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22560
fragaria_vesca	FvH4_4g26610 FvH4_6g03890
malus_domestica	MD04G1217600.v1.1 MD13G1195500.v1.1 MD16G1196300.v1.1
prunus_persica	Prupe.1G016400_v2.0.a1 Prupe.1G016500_v2.0.a1 Prupe.6G337400_v2.0.a1
pyrus_communis	pycom04g19350 pycom13g16770 pycom13g16780
rosa_chinensis	RchiOBHm_Chr3g0452461 RchiOBHm_Chr4g0415671 RchiOBHm_Chr4g0415681 RchiOBHm_Chr4g0415701 RchiOBHm_Chr4g0415711 RchiOBHm_Chr6g0273471
rosa_laevigata	RLG00000008048 RLG00000008049 RLG00000013614 RLG00000025600
rosa_multiflora	Rmu_sc0004536.1_g000003 Rmu_sc0004536.1_g000004 Rmu_sc0011680.1_g000006 Rmu_sc0026940.1_g000001
rosa_roxburghii	Rroxscaffold_5G00355380 Rroxscaffold_6G00429470 Rroxscaffold_7G00195300
rosa_rugosa	Rorug02G0641100 Rorug04G0113600 Rorug04G0113700 Rorug04G0136300 Rorug04G0136400 Rorug06G0075600
rosa_samantha	Rh3AG042800 Rh3BG044500 Rh3CG043100 Rh3DG043900 Rh4AG197200 Rh4AG197300 Rh4BG195700 Rh4BG195800 Rh4CG208000 Rh4CG208100 Rh4CG208300 Rh4DG195000 Rh4DG195100 Rh6AG190300 Rh6BG193800 Rh6CG193300 Rh6DG184900
rosa_wichuraiana	Rw3G003310 Rw4G016770 Rw4G016780 Rw6G016650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	318
AccI	GTMKAC	1 cut(s)	134
AccII	CGCG	1 cut(s)	238
AcoI	YGGCCR	2 cut(s)	3, 465
AcsI	RAATTY	1 cut(s)	165
AcuI	CTGAAG	1 cut(s)	33
AcvI	CACGTG	1 cut(s)	390
AcyI	GRCGYC	1 cut(s)	319
AfaI	GTAC	1 cut(s)	482
AfiI	CCNNNNNNNGG	2 cut(s)	377, 499
AflIII	ACRYGT	3 cut(s)	387, 389, 624
AgsI	TTSAA	2 cut(s)	184, 211
AloI	GAACNNNNNNTCC	2 cut(s)	62, 94
AluBI	AGCT	3 cut(s)	53, 408, 639
AluI	AGCT	3 cut(s)	53, 408, 639
Alw26I	GTCTC	3 cut(s)	125, 193, 615
AlwNI	CAGNNNCTG	1 cut(s)	457
AoxI	GGCC	3 cut(s)	3, 75, 465
ApoI	RAATTY	1 cut(s)	165
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
AspLEI	GCGC	2 cut(s)	240, 321
AsuC2I	CCSGG	1 cut(s)	378
AsuHPI	GGTGA	2 cut(s)	514, 623
BalI	TGGCCA	2 cut(s)	5, 467
BanI	GGYRCC	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	400
BbrPI	CACGTG	1 cut(s)	390
BccI	CCATC	3 cut(s)	14, 243, 457
BceAI	ACGGC	1 cut(s)	398
BcnI	CCSGG	1 cut(s)	378
BcoDI	GTCTC	3 cut(s)	125, 193, 615
BfaI	CTAG	2 cut(s)	267, 474
BfmI	CTRYAG	2 cut(s)	420, 634
BfoI	RGCGCY	1 cut(s)	322
BglI	GCCNNNNNGGC	1 cut(s)	452
Bme1390I	CCNGG	1 cut(s)	378
BmiI	GGNNCC	2 cut(s)	320, 541
BmrFI	CCNGG	1 cut(s)	378
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	439
BpuEI	CTTGAG	2 cut(s)	145, 145
BpuMI	CCSGG	1 cut(s)	378
BsaAI	YACGTR	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	319
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	279, 314
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	2 cut(s)	377, 499
Bse1I	ACTGG	2 cut(s)	322, 434
BseDI	CCNNGG	2 cut(s)	279, 314
BseGI	GGATG	2 cut(s)	343, 468
BseLI	CCNNNNNNNGG	2 cut(s)	377, 499
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	2 cut(s)	322, 434
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	3 cut(s)	5, 77, 467
BshNI	GGYRCC	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	377
BslFI	GGGAC	2 cut(s)	162, 447
BslI	CCNNNNNNNGG	2 cut(s)	377, 499
BsmAI	GTCTC	3 cut(s)	125, 193, 615
BsmFI	GGGAC	2 cut(s)	162, 447
BsmI	GAATGC	1 cut(s)	51
BsnI	GGCC	3 cut(s)	5, 77, 467
Bso31I	GGTCTC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp1407I	TGTACA	1 cut(s)	480
Bsp19I	CCATGG	1 cut(s)	314
BspANI	GGCC	3 cut(s)	5, 77, 467
BspCNI	CTCAG	1 cut(s)	450
BspFNI	CGCG	1 cut(s)	238
BspLI	GGNNCC	2 cut(s)	320, 541
BspMAI	CTGCAG	1 cut(s)	424
BspT107I	GGYRCC	1 cut(s)	318
BspTNI	GGTCTC	1 cut(s)	125
BsrGI	TGTACA	1 cut(s)	480
BsrI	ACTGG	2 cut(s)	322, 434
BssECI	CCNNGG	2 cut(s)	279, 314
BssNAI	GTATAC	1 cut(s)	135
BssNI	GRCGYC	1 cut(s)	319
BssT1I	CCWWGG	2 cut(s)	279, 314
Bst1107I	GTATAC	1 cut(s)	135
BstACI	GRCGYC	1 cut(s)	319
BstAUI	TGTACA	1 cut(s)	480
BstBAI	YACGTR	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	458
BstDSI	CCRYGG	1 cut(s)	314
BstF5I	GGATG	2 cut(s)	343, 468
BstFNI	CGCG	1 cut(s)	238
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	2 cut(s)	240, 321
BstMAI	GTCTC	3 cut(s)	125, 193, 615
BstMWI	GCNNNNNNNGC	2 cut(s)	419, 452
BstNSI	RCATGY	1 cut(s)	628
BstSCI	CCNGG	1 cut(s)	376
BstSFI	CTRYAG	2 cut(s)	420, 634
BstUI	CGCG	1 cut(s)	238
BstXI	CCANNNNNNTGG	3 cut(s)	315, 334, 350
BstZ17I	GTATAC	1 cut(s)	135
BsuRI	GGCC	3 cut(s)	5, 77, 467
BtgI	CCRYGG	1 cut(s)	314
BtgZI	GCGATG	1 cut(s)	396
BtsCI	GGATG	2 cut(s)	343, 468
BtsI	GCAGTG	1 cut(s)	170
BtsIMutI	CAGTG	4 cut(s)	9, 30, 170, 455
Cac8I	GCNNGC	1 cut(s)	51
CaiI	CAGNNNCTG	1 cut(s)	457
CfoI	GCGC	2 cut(s)	240, 321
CseI	GACGC	2 cut(s)	164, 244
Csp6I	GTAC	1 cut(s)	481
CviAII	CATG	6 cut(s)	112, 315, 401, 469, 495, 625
CviJI	RGCY	9 cut(s)	5, 53, 77, 278, 398, 408, 467, 515, 639
CviKI_1	RGCY	9 cut(s)	5, 53, 77, 278, 398, 408, 467, 515, 639
CviQI	GTAC	1 cut(s)	481
DdeI	CTNAG	1 cut(s)	458
DinI	GGCGCC	1 cut(s)	320
DraI	TTTAAA	1 cut(s)	22
EaeI	YGGCCR	2 cut(s)	3, 465
Eco130I	CCWWGG	2 cut(s)	279, 314
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	400
Eco31I	GGTCTC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	33
Eco72I	CACGTG	1 cut(s)	390
EcoT14I	CCWWGG	2 cut(s)	279, 314
EcoT38I	GRGCYC	1 cut(s)	400
EgeI	GGCGCC	1 cut(s)	320
EheI	GGCGCC	1 cut(s)	320
ErhI	CCWWGG	2 cut(s)	279, 314
FaeI	CATG	6 cut(s)	115, 318, 404, 472, 498, 628
FaqI	GGGAC	2 cut(s)	162, 447
FatI	CATG	6 cut(s)	111, 314, 400, 468, 494, 624
FauNDI	CATATG	1 cut(s)	329
FblI	GTMKAC	1 cut(s)	134
FokI	GGATG	2 cut(s)	350, 475
FriOI	GRGCYC	1 cut(s)	400
FspBI	CTAG	2 cut(s)	267, 474
GlaI	GCGC	2 cut(s)	239, 320
HaeII	RGCGCY	1 cut(s)	322
HaeIII	GGCC	3 cut(s)	5, 77, 467
HapII	CCGG	1 cut(s)	377
HgaI	GACGC	2 cut(s)	164, 244
HhaI	GCGC	2 cut(s)	240, 321
Hin1I	GRCGYC	1 cut(s)	319
Hin1II	CATG	6 cut(s)	115, 318, 404, 472, 498, 628
Hin6I	GCGC	2 cut(s)	238, 319
HinP1I	GCGC	2 cut(s)	238, 319
HindIII	AAGCTT	1 cut(s)	51
HinfI	GANTC	2 cut(s)	87, 155
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	2 cut(s)	514, 623
Hpy166II	GTNNAC	3 cut(s)	30, 135, 481
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	5 cut(s)	124, 162, 208, 335, 474
Hpy8I	GTNNAC	3 cut(s)	30, 135, 481
HpyAV	CCTTC	5 cut(s)	8, 110, 190, 289, 572
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	2 cut(s)	49, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	419, 452
HpyF3I	CTNAG	1 cut(s)	458
HpySE526I	ACGT	1 cut(s)	389
Hsp92I	GRCGYC	1 cut(s)	319
Hsp92II	CATG	6 cut(s)	115, 318, 404, 472, 498, 628
HspAI	GCGC	2 cut(s)	238, 319
KasI	GGCGCC	1 cut(s)	318
LpnPI	CCDG	6 cut(s)	95, 320, 335, 390, 415, 437
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	2 cut(s)	267, 474
MaeII	ACGT	1 cut(s)	389
MaeIII	GTNAC	1 cut(s)	232
MboII	GAAGA	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	400
MlsI	TGGCCA	2 cut(s)	5, 467
MluCI	AATT	1 cut(s)	165
MluNI	TGGCCA	2 cut(s)	5, 467
Mly113I	GGCGCC	1 cut(s)	319
MlyI	GAGTC	2 cut(s)	96, 164
MnlI	CCTC	8 cut(s)	88, 120, 169, 274, 453, 498, 505, 517
Mox20I	TGGCCA	2 cut(s)	5, 467
MscI	TGGCCA	2 cut(s)	5, 467
MseI	TTAA	2 cut(s)	21, 587
MslI	CAYNNNNRTG	1 cut(s)	313
Msp20I	TGGCCA	2 cut(s)	5, 467
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	1 cut(s)	378
Mva1269I	GAATGC	1 cut(s)	51
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	2 cut(s)	419, 452
NarI	GGCGCC	1 cut(s)	319
NciI	CCSGG	1 cut(s)	378
NcoI	CCATGG	1 cut(s)	314
NdeI	CATATG	1 cut(s)	329
NlaIII	CATG	6 cut(s)	115, 318, 404, 472, 498, 628
NlaIV	GGNNCC	2 cut(s)	320, 541
NmuCI	GTSAC	1 cut(s)	232
NspI	RCATGY	1 cut(s)	628
PceI	AGGCCT	1 cut(s)	77
PciI	ACATGT	1 cut(s)	624
PctI	GAATGC	1 cut(s)	51
PleI	GAGTC	2 cut(s)	95, 163
PluTI	GGCGCC	1 cut(s)	322
PmaCI	CACGTG	1 cut(s)	390
PmlI	CACGTG	1 cut(s)	390
PpsI	GAGTC	2 cut(s)	95, 163
Ppu21I	YACGTR	1 cut(s)	390
PscI	ACATGT	1 cut(s)	624
PspCI	CACGTG	1 cut(s)	390
PspN4I	GGNNCC	2 cut(s)	320, 541
PsrI	GAACNNNNNNTAC	2 cut(s)	473, 505
PstI	CTGCAG	1 cut(s)	424
PstNI	CAGNNNCTG	1 cut(s)	457
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
RseI	CAYNNNNRTG	1 cut(s)	313
SaqAI	TTAA	2 cut(s)	21, 587
SchI	GAGTC	2 cut(s)	96, 164
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	1 cut(s)	400
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	2 cut(s)	420, 634
SfoI	GGCGCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	313
SmlI	CTYRAG	2 cut(s)	124, 160
SmoI	CTYRAG	2 cut(s)	124, 160
Sse9I	AATT	1 cut(s)	165
SseBI	AGGCCT	1 cut(s)	77
SspDI	GGCGCC	1 cut(s)	318
SspMI	CTAG	2 cut(s)	267, 474
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	376
StyI	CCWWGG	2 cut(s)	279, 314
TaiI	ACGT	1 cut(s)	392
TaqI	TCGA	1 cut(s)	347
TaqII	GACCGA	1 cut(s)	352
TasI	AATT	1 cut(s)	165
TatI	WGTACW	1 cut(s)	480
Tru1I	TTAA	2 cut(s)	21, 587
Tru9I	TTAA	2 cut(s)	21, 587
TscAI	CASTG	4 cut(s)	16, 37, 177, 462
TseFI	GTSAC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	232
TspRI	CASTG	4 cut(s)	16, 37, 177, 462
XapI	RAATTY	1 cut(s)	165
XbaI	TCTAGA	1 cut(s)	473
XceI	RCATGY	1 cut(s)	628
XmiI	GTMKAC	1 cut(s)	134
XspI	CTAG	2 cut(s)	267, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.