Rh3DG043900

Acetyltransferase (GNAT) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001211
Physical Location & Seq
Reverse (-)
2884931 .. 2885698
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG043900.1

Sequence Viewer

Length: 612 bp
ATGAATTATACTATAAAACATCCAACAAGCTCACTGCCATTGCACAATCCAATACAGCAACATTTGTCACCGGCCATAGCCATTTCCATTAGCGGAGTTATGGAGATCAACTTGTCAAGCATCACCCTCCGTCCATTCCGGCTATCAGATGTCGAAGATCTCATGACATATGCCGGAGACGAGCAAGTGACTCGAAACCTCCGATGGAAGACTTTGACAACCAAAGAGGAGGCTTTCACTTTCCTCAAAGATGTGTGTATCCCACACCCTTGGCGCCGGTCGATATGCATCGATGATCGTTCAATCGGCTACATATCCGTCTTTCCATGGTCAGGCGATGAGAGTCACAAGGCTGACATGGGGTATGGTATAGCCCCAAAGTTTTGGGGACAAGGAATAGCCACAGAAGTAGTTAAGACTGCCGTTCCTCTAGTGTTCAGGGACTTGCCTCATTTGGTTAGGTTGCAAGCTTTTGCATATTCAGAGAATAAGGCCTCTCAGAGGGTGTTGGAGAAAGCTGGGTTCCAAAGGGAGGGTTTGTTGAGGAAATATGAATATATTAAGGGAGAAATTATTGATATGGTTGTTTATAGTTTTCTATCAACAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_3

Protein Analysis

203

Amino Acids

23.14

Weight (kDa)

7.02

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_3 PF13302 41 - 176 8.7e-26 Acetyltransferase (GNAT) domain
Acetyltransf_4 PF13420 45 - 196 4.6e-06 Acetyltransferase (GNAT) domain
Acetyltransf_1 PF00583 92 - 175 4.4e-09 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 273
AciI CCGC 1 cut(s) 93
AcoI YGGCCR 1 cut(s) 72
AcyI GRCGYC 1 cut(s) 274
AfiI CCNNNNNNNGG 3 cut(s) 332, 501, 532
AgsI TTSAA 1 cut(s) 303
AluBI AGCT 3 cut(s) 30, 470, 518
AluI AGCT 3 cut(s) 30, 470, 518
Alw26I GTCTC 1 cut(s) 171
AoxI GGCC 2 cut(s) 72, 492
AspLEI GCGC 1 cut(s) 276
AsuHPI GGTGA 2 cut(s) 60, 115
BanI GGYRCC 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 215
BccI CCATC 1 cut(s) 198
BceAI ACGGC 1 cut(s) 407
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BciVI GTATCC 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 171
BfaI CTAG 1 cut(s) 431
BfoI RGCGCY 1 cut(s) 277
BfuI GTATCC 1 cut(s) 269
BglII AGATCT 1 cut(s) 157
BmiI GGNNCC 2 cut(s) 275, 524
BmsI GCATC 2 cut(s) 129, 297
BpiI GAAGAC 1 cut(s) 215
Bsa29I ATCGAT 1 cut(s) 291
BsaBI GATNNNNATC 1 cut(s) 287
BsaHI GRCGYC 1 cut(s) 274
BsaJI CCNNGG 2 cut(s) 269, 326
BsaXI ACNNNNNCTCC 2 cut(s) 524, 554
Bsc4I CCNNNNNNNGG 3 cut(s) 332, 501, 532
Bse118I RCCGGY 2 cut(s) 70, 276
Bse3DI GCAATG 1 cut(s) 38
Bse8I GATNNNNATC 1 cut(s) 287
BseCI ATCGAT 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 269, 326
BseGI GGATG 1 cut(s) 19
BseJI GATNNNNATC 1 cut(s) 287
BseLI CCNNNNNNNGG 3 cut(s) 332, 501, 532
BseMI GCAATG 1 cut(s) 38
BseMII CTCAG 1 cut(s) 512
BseRI GAGGAG 1 cut(s) 242
BseYI CCCAGC 1 cut(s) 518
Bsh1285I CGRYCG 1 cut(s) 281
BshFI GGCC 2 cut(s) 74, 494
BshNI GGYRCC 1 cut(s) 273
BshVI ATCGAT 1 cut(s) 291
BsiEI CGRYCG 1 cut(s) 281
BsiSI CCGG 4 cut(s) 71, 139, 174, 277
BslFI GGGAC 2 cut(s) 402, 455
BslI CCNNNNNNNGG 3 cut(s) 332, 501, 532
BsmAI GTCTC 1 cut(s) 171
BsmBI CGTCTC 1 cut(s) 171
BsmFI GGGAC 2 cut(s) 402, 455
BsnI GGCC 2 cut(s) 74, 494
Bsp143I GATC 3 cut(s) 105, 157, 295
Bsp19I CCATGG 1 cut(s) 326
BspACI CCGC 1 cut(s) 93
BspANI GGCC 2 cut(s) 74, 494
BspCNI CTCAG 1 cut(s) 511
BspDI ATCGAT 1 cut(s) 291
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 275, 524
BspT107I GGYRCC 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 38
BsrFI RCCGGY 2 cut(s) 70, 276
BssAI RCCGGY 2 cut(s) 70, 276
BssECI CCNNGG 2 cut(s) 269, 326
BssMI GATC 3 cut(s) 105, 157, 295
BssNI GRCGYC 1 cut(s) 274
BssT1I CCWWGG 2 cut(s) 269, 326
BstACI GRCGYC 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 468
BstDEI CTNAG 1 cut(s) 498
BstDSI CCRYGG 1 cut(s) 326
BstENI CCTNNNNNAGG 1 cut(s) 499
BstF5I GGATG 1 cut(s) 19
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 3 cut(s) 108, 160, 298
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 3 cut(s) 105, 157, 295
BstMCI CGRYCG 1 cut(s) 281
BstV2I GAAGAC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 157
BstXI CCANNNNNNTGG 2 cut(s) 270, 384
BstYI RGATCY 1 cut(s) 157
Bsu15I ATCGAT 1 cut(s) 291
BsuI GTATCC 1 cut(s) 269
BsuRI GGCC 2 cut(s) 74, 494
BsuTUI ATCGAT 1 cut(s) 291
BtgI CCRYGG 1 cut(s) 326
BtgZI GCGATG 1 cut(s) 351
BtsCI GGATG 1 cut(s) 19
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 32
Cac8I GCNNGC 1 cut(s) 468
CciI TCATGA 1 cut(s) 162
CfoI GCGC 1 cut(s) 276
Cfr10I RCCGGY 2 cut(s) 70, 276
ClaI ATCGAT 1 cut(s) 291
CviAII CATG 3 cut(s) 163, 327, 358
DdeI CTNAG 1 cut(s) 498
DinI GGCGCC 1 cut(s) 275
DpnI GATC 3 cut(s) 107, 159, 297
DpnII GATC 3 cut(s) 105, 157, 295
EaeI YGGCCR 1 cut(s) 72
Eco130I CCWWGG 2 cut(s) 269, 326
Eco147I AGGCCT 1 cut(s) 494
EcoNI CCTNNNNNAGG 1 cut(s) 499
EcoT14I CCWWGG 2 cut(s) 269, 326
EcoT22I ATGCAT 1 cut(s) 290
EgeI GGCGCC 1 cut(s) 275
EheI GGCGCC 1 cut(s) 275
ErhI CCWWGG 2 cut(s) 269, 326
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 3 cut(s) 166, 330, 361
FaqI GGGAC 2 cut(s) 402, 455
FatI CATG 3 cut(s) 162, 326, 357
FauNDI CATATG 1 cut(s) 169
FokI GGATG 1 cut(s) 6
FspBI CTAG 1 cut(s) 431
GlaI GCGC 1 cut(s) 275
GsaI CCCAGC 1 cut(s) 522
HaeII RGCGCY 1 cut(s) 277
HaeIII GGCC 2 cut(s) 74, 494
HapII CCGG 4 cut(s) 71, 139, 174, 277
HhaI GCGC 1 cut(s) 276
Hin1I GRCGYC 1 cut(s) 274
Hin1II CATG 3 cut(s) 166, 330, 361
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 468
HinfI GANTC 2 cut(s) 190, 343
HpaII CCGG 4 cut(s) 71, 139, 174, 277
HphI GGTGA 2 cut(s) 60, 115
Hpy188I TCNGA 4 cut(s) 148, 203, 484, 501
Hpy188III TCNNGA 1 cut(s) 163
HpyCH4V TGCA 4 cut(s) 43, 288, 466, 476
HpyF3I CTNAG 1 cut(s) 498
Hsp92I GRCGYC 1 cut(s) 274
Hsp92II CATG 3 cut(s) 166, 330, 361
HspAI GCGC 1 cut(s) 274
KasI GGCGCC 1 cut(s) 273
Kzo9I GATC 3 cut(s) 105, 157, 295
LpnPI CCDG 7 cut(s) 84, 152, 187, 290, 318, 424, 504
LweI GCATC 2 cut(s) 129, 297
MaeI CTAG 1 cut(s) 431
MaeIII GTNAC 3 cut(s) 66, 187, 344
MalI GATC 3 cut(s) 107, 159, 297
MboI GATC 3 cut(s) 105, 157, 295
MboII GAAGA 2 cut(s) 167, 220
MflI RGATCY 1 cut(s) 157
MluCI AATT 2 cut(s) 4, 570
Mly113I GGCGCC 1 cut(s) 274
MlyI GAGTC 2 cut(s) 184, 352
MmeI TCCRAC 2 cut(s) 47, 489
Mph1103I ATGCAT 1 cut(s) 290
MseI TTAA 2 cut(s) 414, 561
MspI CCGG 4 cut(s) 71, 139, 174, 277
NarI GGCGCC 1 cut(s) 274
NcoI CCATGG 1 cut(s) 326
NdeI CATATG 1 cut(s) 169
NdeII GATC 3 cut(s) 105, 157, 295
NlaIII CATG 3 cut(s) 166, 330, 361
NlaIV GGNNCC 2 cut(s) 275, 524
NmuCI GTSAC 3 cut(s) 66, 187, 344
NsiI ATGCAT 1 cut(s) 290
PagI TCATGA 1 cut(s) 162
PceI AGGCCT 1 cut(s) 494
PcsI WCGNNNNNNNCGW 1 cut(s) 199
PleI GAGTC 2 cut(s) 184, 351
PluTI GGCGCC 1 cut(s) 277
PpsI GAGTC 2 cut(s) 184, 351
PspFI CCCAGC 1 cut(s) 518
PspN4I GGNNCC 2 cut(s) 275, 524
PsuI RGATCY 1 cut(s) 157
SaqAI TTAA 2 cut(s) 414, 561
Sau3AI GATC 3 cut(s) 105, 157, 295
SchI GAGTC 2 cut(s) 184, 352
SetI ASST 5 cut(s) 32, 201, 464, 472, 520
SfaNI GCATC 2 cut(s) 129, 297
SfoI GGCGCC 1 cut(s) 275
Sse9I AATT 2 cut(s) 4, 570
SseBI AGGCCT 1 cut(s) 494
SsiI CCGC 1 cut(s) 93
SspDI GGCGCC 1 cut(s) 273
SspMI CTAG 1 cut(s) 431
StuI AGGCCT 1 cut(s) 494
StyI CCWWGG 2 cut(s) 269, 326
TaqI TCGA 4 cut(s) 153, 193, 281, 291
TasI AATT 2 cut(s) 4, 570
Tru1I TTAA 2 cut(s) 414, 561
Tru9I TTAA 2 cut(s) 414, 561
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 3 cut(s) 66, 187, 344
Tsp45I GTSAC 3 cut(s) 66, 187, 344
TspDTI ATGAA 2 cut(s) 17, 567
TspGWI ACGGA 2 cut(s) 119, 307
TspRI CASTG 1 cut(s) 39
XagI CCTNNNNNAGG 1 cut(s) 499
XspI CTAG 1 cut(s) 431
Zsp2I ATGCAT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.