Rw6G016650

Acetyltransferase (GNAT) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001211
Physical Location & Seq
Forward (+)
32833612 .. 32834124
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G016650.1

Sequence Viewer

Length: 513 bp
ATGGAGATCAACTTGTCAAGCATCACCCTCCGTCCATTCCGGCTATCAGATGTCGAAGATCTCATGACATATGCCGGCGATGAGCAAGTGACTCAACACCTCAGATGGAAGACTTTGACAACCAAAGAGGAGGCTCTCACTTTCCTCAAAGATGTTTGTATCCCCCACCCTTGGCGCCGGTCAATATGCATTGATGATCATTCAATCGGCTTCATAACCGTCTTTCCGTGGTCGGGAGATGAGAGTCACAAGGCTGATATCGGGTATGCTATATCCCCAAAGTACTGGGGACAAGGAATAGCCAGTGAAGCAGTTAAGACTGCTGTCCCTCAAGTGTTCAAGGACTTCCCTCATTTGCTTAGGTTGCAAGCTTTTGCAAATTCAAAGAATAAGGCCTCTCAGAGGGTTTTGGAGAAAGCTGGGTTTCAGAAGGAGGGTTTGTTGAGAAAATATGGATGTCTTAAGGGAGAAATTATTGATTTGGTTGTTTATAGTTTTCTATCAACAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_3

Protein Analysis

170

Amino Acids

19.32

Weight (kDa)

6.96

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_3 PF13302 8 - 143 2e-26 Acetyltransferase (GNAT) domain
Acetyltransf_1 PF00583 59 - 142 1.1e-10 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 174
AcsI RAATTY 1 cut(s) 379
AcyI GRCGYC 1 cut(s) 175
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 3 cut(s) 171, 233, 402
AflII CTTAAG 1 cut(s) 461
AgsI TTSAA 3 cut(s) 204, 340, 384
AluBI AGCT 2 cut(s) 371, 419
AluI AGCT 2 cut(s) 371, 419
AoxI GGCC 1 cut(s) 393
ApoI RAATTY 1 cut(s) 379
AspLEI GCGC 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 16
BanI GGYRCC 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 116
BccI CCATC 1 cut(s) 99
BciVI GTATCC 1 cut(s) 170
BclI TGATCA 1 cut(s) 196
BfoI RGCGCY 1 cut(s) 178
BfrI CTTAAG 1 cut(s) 461
BfuI GTATCC 1 cut(s) 170
BglII AGATCT 1 cut(s) 58
BmcAI AGTACT 1 cut(s) 284
BmiI GGNNCC 1 cut(s) 176
BmrI ACTGGG 1 cut(s) 295
BmsI GCATC 1 cut(s) 30
BmuI ACTGGG 1 cut(s) 295
BoxI GACNNNNGTC 1 cut(s) 323
BpiI GAAGAC 1 cut(s) 116
Bpu10I CCTNAGC 1 cut(s) 359
BpuEI CTTGAG 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 175
BsaJI CCNNGG 2 cut(s) 170, 227
BsaXI ACNNNNNCTCC 2 cut(s) 425, 455
Bsc4I CCNNNNNNNGG 3 cut(s) 171, 233, 402
Bse118I RCCGGY 2 cut(s) 74, 177
Bse1I ACTGG 2 cut(s) 290, 303
BseDI CCNNGG 2 cut(s) 170, 227
BseGI GGATG 1 cut(s) 461
BseLI CCNNNNNNNGG 3 cut(s) 171, 233, 402
BseMII CTCAG 2 cut(s) 115, 413
BseNI ACTGG 2 cut(s) 290, 303
BseRI GAGGAG 1 cut(s) 143
BseYI CCCAGC 1 cut(s) 419
BshFI GGCC 1 cut(s) 395
BshNI GGYRCC 1 cut(s) 174
BsiSI CCGG 3 cut(s) 40, 75, 178
BslFI GGGAC 2 cut(s) 303, 311
BslI CCNNNNNNNGG 3 cut(s) 171, 233, 402
BsmFI GGGAC 2 cut(s) 303, 311
BsnI GGCC 1 cut(s) 395
Bsp143I GATC 3 cut(s) 6, 58, 196
BspANI GGCC 1 cut(s) 395
BspCNI CTCAG 2 cut(s) 114, 412
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 176
BspT107I GGYRCC 1 cut(s) 174
BspTI CTTAAG 1 cut(s) 461
BsrFI RCCGGY 2 cut(s) 74, 177
BsrI ACTGG 2 cut(s) 290, 303
BssAI RCCGGY 2 cut(s) 74, 177
BssECI CCNNGG 2 cut(s) 170, 227
BssMI GATC 3 cut(s) 6, 58, 196
BssNI GRCGYC 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 220
BstACI GRCGYC 1 cut(s) 175
BstAFI CTTAAG 1 cut(s) 461
BstC8I GCNNGC 2 cut(s) 76, 369
BstDEI CTNAG 3 cut(s) 101, 359, 399
BstDSI CCRYGG 1 cut(s) 227
BstENI CCTNNNNNAGG 1 cut(s) 400
BstF5I GGATG 1 cut(s) 461
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 3 cut(s) 9, 61, 199
BstMBI GATC 3 cut(s) 6, 58, 196
BstMWI GCNNNNNNNGC 2 cut(s) 308, 364
BstPAI GACNNNNGTC 1 cut(s) 323
BstV2I GAAGAC 1 cut(s) 116
BstX2I RGATCY 1 cut(s) 58
BstXI CCANNNNNNTGG 1 cut(s) 285
BstYI RGATCY 1 cut(s) 58
BsuI GTATCC 1 cut(s) 170
BsuRI GGCC 1 cut(s) 395
BtgI CCRYGG 1 cut(s) 227
BtgZI GCGATG 1 cut(s) 93
BtsCI GGATG 1 cut(s) 461
BtsIMutI CAGTG 1 cut(s) 310
Cac8I GCNNGC 2 cut(s) 76, 369
CciI TCATGA 1 cut(s) 63
CfoI GCGC 1 cut(s) 177
Cfr10I RCCGGY 2 cut(s) 74, 177
Csp6I GTAC 1 cut(s) 283
CviAII CATG 1 cut(s) 64
CviJI RGCY 8 cut(s) 43, 134, 210, 254, 302, 371, 395, 419
CviKI_1 RGCY 8 cut(s) 43, 134, 210, 254, 302, 371, 395, 419
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 3 cut(s) 101, 359, 399
DinI GGCGCC 1 cut(s) 176
DpnI GATC 3 cut(s) 8, 60, 198
DpnII GATC 3 cut(s) 6, 58, 196
Eco130I CCWWGG 1 cut(s) 170
Eco147I AGGCCT 1 cut(s) 395
Eco32I GATATC 1 cut(s) 259
EcoNI CCTNNNNNAGG 1 cut(s) 400
EcoRV GATATC 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 191
EgeI GGCGCC 1 cut(s) 176
EheI GGCGCC 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 1 cut(s) 67
FaiI YATR 9 cut(s) 65, 70, 72, 187, 215, 267, 272, 453, 492
FaqI GGGAC 2 cut(s) 303, 311
FatI CATG 1 cut(s) 63
FauNDI CATATG 1 cut(s) 70
FbaI TGATCA 1 cut(s) 196
FokI GGATG 1 cut(s) 468
GlaI GCGC 1 cut(s) 176
GsaI CCCAGC 1 cut(s) 423
HaeII RGCGCY 1 cut(s) 178
HaeIII GGCC 1 cut(s) 395
HapII CCGG 3 cut(s) 40, 75, 178
HhaI GCGC 1 cut(s) 177
Hin1I GRCGYC 1 cut(s) 175
Hin1II CATG 1 cut(s) 67
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 369
HinfI GANTC 2 cut(s) 91, 244
HpaII CCGG 3 cut(s) 40, 75, 178
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 4 cut(s) 49, 104, 402, 429
Hpy188III TCNNGA 2 cut(s) 64, 234
HpyAV CCTTC 1 cut(s) 424
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4V TGCA 3 cut(s) 189, 367, 377
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 364
HpyF3I CTNAG 3 cut(s) 101, 359, 399
Hsp92I GRCGYC 1 cut(s) 175
Hsp92II CATG 1 cut(s) 67
HspAI GCGC 1 cut(s) 175
KasI GGCGCC 1 cut(s) 174
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 3 cut(s) 6, 58, 196
LpnPI CCDG 6 cut(s) 53, 88, 191, 271, 316, 405
LweI GCATC 1 cut(s) 30
MaeIII GTNAC 2 cut(s) 88, 245
MalI GATC 3 cut(s) 8, 60, 198
MboI GATC 3 cut(s) 6, 58, 196
MboII GAAGA 2 cut(s) 68, 121
MflI RGATCY 1 cut(s) 58
MluCI AATT 2 cut(s) 379, 471
Mly113I GGCGCC 1 cut(s) 175
MlyI GAGTC 2 cut(s) 85, 253
Mph1103I ATGCAT 1 cut(s) 191
MroNI GCCGGC 1 cut(s) 74
MseI TTAA 2 cut(s) 315, 462
MspCI CTTAAG 1 cut(s) 461
MspI CCGG 3 cut(s) 40, 75, 178
MwoI GCNNNNNNNGC 2 cut(s) 308, 364
NaeI GCCGGC 1 cut(s) 76
NarI GGCGCC 1 cut(s) 175
NdeI CATATG 1 cut(s) 70
NdeII GATC 3 cut(s) 6, 58, 196
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 176
NmuCI GTSAC 2 cut(s) 88, 245
NsiI ATGCAT 1 cut(s) 191
PagI TCATGA 1 cut(s) 63
PceI AGGCCT 1 cut(s) 395
PdiI GCCGGC 1 cut(s) 76
PleI GAGTC 2 cut(s) 85, 252
PluTI GGCGCC 1 cut(s) 178
PpsI GAGTC 2 cut(s) 85, 252
PshAI GACNNNNGTC 1 cut(s) 323
PspFI CCCAGC 1 cut(s) 419
PspN4I GGNNCC 1 cut(s) 176
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SaqAI TTAA 2 cut(s) 315, 462
Sau3AI GATC 3 cut(s) 6, 58, 196
ScaI AGTACT 1 cut(s) 284
SchI GAGTC 2 cut(s) 85, 253
SetI ASST 4 cut(s) 102, 365, 373, 421
SfaNI GCATC 1 cut(s) 30
SfoI GGCGCC 1 cut(s) 176
SmlI CTYRAG 2 cut(s) 330, 461
SmoI CTYRAG 2 cut(s) 330, 461
Sse9I AATT 2 cut(s) 379, 471
SseBI AGGCCT 1 cut(s) 395
SspDI GGCGCC 1 cut(s) 174
StuI AGGCCT 1 cut(s) 395
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 54
TasI AATT 2 cut(s) 379, 471
TatI WGTACW 1 cut(s) 282
Tru1I TTAA 2 cut(s) 315, 462
Tru9I TTAA 2 cut(s) 315, 462
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 2 cut(s) 88, 245
Tsp45I GTSAC 2 cut(s) 88, 245
TspDTI ATGAA 1 cut(s) 202
TspGWI ACGGA 2 cut(s) 20, 216
TspRI CASTG 1 cut(s) 310
Vha464I CTTAAG 1 cut(s) 461
XagI CCTNNNNNAGG 1 cut(s) 400
XapI RAATTY 1 cut(s) 379
ZrmI AGTACT 1 cut(s) 284
Zsp2I ATGCAT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.