AT3G46260

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001437
Physical Location & Seq
Reverse (-)
16998163 .. 16999992
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G46260.1

Sequence Viewer

Length: 1305 bp
ATGGAGAGTGGGCTCTTGTTGCTCGCATTTCTATCAACTTTGGTTACAGTTCACCAATTCCACATTATTCAAGCTCAAGAAGGTATAAGCATTGACTGTGGAACAACGGGTTCCTACGTGGACTCCAACAATGTAACATGGGTCGGAGATAAAGGCTTCGTCACCACCGGCGAGTCCATTAATATCACGGACGTCGTCAAAAAACCGATCAATACCCTCCGGTACTTTCCAACAGGTCAAACAAATTGCTACACCAACATTCCAGCGACAAAAGGCCGGACCACCCTCGTGAGGACGAAATTTTACTACAAAAACTATGACGAGAATTACTCGCCACCATCTTTCGACGTGGTTTACGATGGGAAACACCGTAATTCTATTGCTATGACAGTTGACTCGTTGTTCAGCGACGAGGAAACATTCCATTACTCTGAGGTGATATTTGCTCCGGCGAATGAGAATATCAGCGTTTGCCTCGTCCGTACGTCTCCGTCCGATAACCCTTTTATATCTTCCATTGAAGTTTACCGCTTCGATGCCGGCATGTATGACGATCTTGGTCCTGAAGAAGGTTTCATTCTCTATAAAAGAAATGCGTACGGTGCCACAAAGCTTATAAGCTACCCGTTAGATCCTTACGGTAGGCTATGGTCCCCAAAAGGGTCCCAAGACTATCCCGGACTGATCGATCTTACAACCTCAGCCCCATCCATAGATATCACCGGAGCGTTGAACAAACCGCCAGAGATTGTTATGACGAAGGCAATGTCAGGAGACGGCTTTATAATGTCCGGCCTGAATCTCCCCTCTACCCTTCTACCGGTATACTTAGCTCTTTACTTTTCAGAGCCTCAGAGTCTAGGTCGGACCCAAAAACGATCGTTCACCGTTTTCTTGGACGGCATGCAAGTGGGTTCACATCCCATAGTACCAGTTTTTGGGAAAGCGACTCAAGTCGTTTTAAGAGATATAATGGCCAGTTCGGAGTCCCAGTTAGTTTTTAAGTCAACCGATGACTCGGGTTTGCCGACCATCATCAGTGGTTTGGAGGTCTATTCGATAAGTAACTACAAGGACCATGGAAGCGGAGGCGGGGGCCAAAGCGGCAGTAGTAATAATGGTAAGTTTTTATTGAACCTATGTAAATGTTTTATTAATAACTTTTTTTCCTGGTCAATTAAACAAATTACATCACATCCAAAAATTCACAAGATTTTCCCAAGTTTTAGTAAACAACCAAAAGGTAATAAGTTAAATTTAAAGAAGTACTATTTTGAAGATAGTGAATGTGTTTTCATTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

434

Amino Acids

48.07

Weight (kDa)

6.09

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 31 - 354 2.6e-71 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 617, 785
AatII GACGTC 1 cut(s) 195
AccB1I GGYRCC 1 cut(s) 602
AccB7I CCANNNNNTGG 1 cut(s) 938
AccI GTMKAC 1 cut(s) 825
AciI CCGC 5 cut(s) 529, 740, 1086, 1092, 1104
AclWI GGATC 1 cut(s) 626
AcoI YGGCCR 1 cut(s) 975
AcsI RAATTY 3 cut(s) 299, 1203, 1255
AcuI CTGAAG 1 cut(s) 585
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 5 cut(s) 224, 484, 599, 930, 1268
AfiI CCNNNNNNNGG 5 cut(s) 291, 569, 660, 820, 938
AgeI ACCGGT 1 cut(s) 820
AgsI TTSAA 5 cut(s) 71, 521, 733, 1135, 1277
AjiI CACGTC 1 cut(s) 349
AjnI CCWGG 1 cut(s) 1169
AleI CACNNNNGTG 1 cut(s) 287
AluBI AGCT 4 cut(s) 74, 613, 621, 833
AluI AGCT 4 cut(s) 74, 613, 621, 833
Alw26I GTCTC 2 cut(s) 492, 768
AlwI GGATC 1 cut(s) 626
Ama87I CYCGRG 1 cut(s) 1018
AoxI GGCC 4 cut(s) 274, 793, 975, 1096
ApoI RAATTY 3 cut(s) 299, 1203, 1255
ArsI GACNNNNNNTTYG 2 cut(s) 752, 784
AseI ATTAAT 2 cut(s) 180, 1155
AsiGI ACCGGT 1 cut(s) 820
AspS9I GGNCC 7 cut(s) 279, 560, 651, 663, 867, 1075, 1096
AsuC2I CCSGG 1 cut(s) 678
AsuHPI GGTGA 5 cut(s) 44, 154, 448, 712, 877
AvaI CYCGRG 1 cut(s) 1018
AvaII GGWCC 6 cut(s) 279, 560, 651, 663, 867, 1075
BalI TGGCCA 1 cut(s) 977
BanI GGYRCC 1 cut(s) 602
BanII GRGCYC 1 cut(s) 15
BauI CACGAG 1 cut(s) 287
BbvCI CCTCAGC 1 cut(s) 700
BccI CCATC 4 cut(s) 346, 353, 715, 1040
BceAI ACGGC 2 cut(s) 793, 916
BciT130I CCWGG 1 cut(s) 1171
BcnI CCSGG 1 cut(s) 678
BcoDI GTCTC 2 cut(s) 492, 768
BfaI CTAG 1 cut(s) 860
BglI GCCNNNNNGGC 1 cut(s) 1104
BisI GCNGC 1 cut(s) 1105
BlsI GCNGC 1 cut(s) 1106
BmcAI AGTACT 1 cut(s) 1268
Bme1390I CCNGG 2 cut(s) 678, 1171
Bme18I GGWCC 6 cut(s) 279, 560, 651, 663, 867, 1075
BmeT110I CYCGRG 1 cut(s) 1018
BmgBI CACGTC 1 cut(s) 349
BmgT120I GGNCC 7 cut(s) 279, 560, 651, 663, 867, 1075, 1096
BmiI GGNNCC 7 cut(s) 112, 604, 653, 664, 665, 869, 1097
BmrFI CCNGG 2 cut(s) 678, 1171
BmrI ACTGGG 1 cut(s) 985
BmsI GCATC 1 cut(s) 526
BmuI ACTGGG 1 cut(s) 985
BoxI GACNNNNGTC 1 cut(s) 953
BplI GAGNNNNNCTC 2 cut(s) 314, 346
Bpu10I CCTNAGC 1 cut(s) 700
BpuEI CTTGAG 2 cut(s) 60, 936
BpuMI CCSGG 1 cut(s) 678
Bsa29I ATCGAT 1 cut(s) 687
BsaAI YACGTR 1 cut(s) 118
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 1078
BsaWI WCCGGW 3 cut(s) 219, 722, 820
BsaXI ACNNNNNCTCC 4 cut(s) 107, 137, 977, 1007
Bsc4I CCNNNNNNNGG 5 cut(s) 291, 569, 660, 820, 938
Bse118I RCCGGY 3 cut(s) 167, 539, 820
Bse1I ACTGG 3 cut(s) 932, 978, 991
Bse3DI GCAATG 1 cut(s) 771
BseBI CCWGG 1 cut(s) 1171
BseCI ATCGAT 1 cut(s) 687
BseDI CCNNGG 1 cut(s) 1078
BseGI GGATG 3 cut(s) 707, 919, 1195
BseLI CCNNNNNNNGG 5 cut(s) 291, 569, 660, 820, 938
BseMI GCAATG 1 cut(s) 771
BseMII CTCAG 3 cut(s) 423, 714, 866
BseNI ACTGG 3 cut(s) 932, 978, 991
Bsh1285I CGRYCG 1 cut(s) 881
BshFI GGCC 4 cut(s) 276, 795, 977, 1098
BshNI GGYRCC 1 cut(s) 602
BshTI ACCGGT 1 cut(s) 820
BshVI ATCGAT 1 cut(s) 687
BsiEI CGRYCG 1 cut(s) 881
BsiHKCI CYCGRG 1 cut(s) 1018
BsiSI CCGG 9 cut(s) 168, 220, 277, 449, 540, 678, 723, 792, 821
BsiWI CGTACG 2 cut(s) 482, 597
BslFI GGGAC 3 cut(s) 637, 649, 973
BslI CCNNNNNNNGG 5 cut(s) 291, 569, 660, 820, 938
BsmAI GTCTC 2 cut(s) 492, 768
BsmBI CGTCTC 2 cut(s) 492, 768
BsmFI GGGAC 3 cut(s) 637, 649, 973
BsnI GGCC 4 cut(s) 276, 795, 977, 1098
BsoBI CYCGRG 1 cut(s) 1018
Bsp1286I GDGCHC 1 cut(s) 15
Bsp143I GATC 6 cut(s) 207, 553, 631, 684, 688, 878
Bsp19I CCATGG 1 cut(s) 1078
BspACI CCGC 5 cut(s) 529, 740, 1086, 1092, 1104
BspANI GGCC 4 cut(s) 276, 795, 977, 1098
BspCNI CTCAG 3 cut(s) 424, 713, 865
BspDI ATCGAT 1 cut(s) 687
BspLI GGNNCC 7 cut(s) 112, 604, 653, 664, 665, 869, 1097
BspPI GGATC 1 cut(s) 626
BspT107I GGYRCC 1 cut(s) 602
BsrDI GCAATG 1 cut(s) 771
BsrFI RCCGGY 3 cut(s) 167, 539, 820
BsrI ACTGG 3 cut(s) 932, 978, 991
BssAI RCCGGY 3 cut(s) 167, 539, 820
BssECI CCNNGG 1 cut(s) 1078
BssMI GATC 6 cut(s) 207, 553, 631, 684, 688, 878
BssNAI GTATAC 1 cut(s) 826
BssNI GRCGYC 1 cut(s) 192
BssSI CACGAG 1 cut(s) 287
BssT1I CCWWGG 1 cut(s) 1078
Bst1107I GTATAC 1 cut(s) 826
Bst2BI CACGAG 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 1171
Bst4CI ACNGT 7 cut(s) 49, 98, 371, 391, 602, 641, 889
BstACI GRCGYC 1 cut(s) 192
BstBAI YACGTR 1 cut(s) 118
BstC8I GCNNGC 3 cut(s) 24, 541, 905
BstDEI CTNAG 4 cut(s) 432, 700, 829, 852
BstDSI CCRYGG 1 cut(s) 1078
BstENI CCTNNNNNAGG 1 cut(s) 567
BstF5I GGATG 3 cut(s) 707, 919, 1195
BstKTI GATC 6 cut(s) 210, 556, 634, 687, 691, 881
BstMAI GTCTC 2 cut(s) 492, 768
BstMBI GATC 6 cut(s) 207, 553, 631, 684, 688, 878
BstMCI CGRYCG 1 cut(s) 881
BstMWI GCNNNNNNNGC 3 cut(s) 19, 602, 1104
BstNI CCWGG 1 cut(s) 1171
BstNSI RCATGY 2 cut(s) 547, 907
BstPAI GACNNNNGTC 1 cut(s) 953
BstSCI CCNGG 2 cut(s) 676, 1169
BstX2I RGATCY 1 cut(s) 631
BstYI RGATCY 1 cut(s) 631
BstZ17I GTATAC 1 cut(s) 826
Bsu15I ATCGAT 1 cut(s) 687
BsuRI GGCC 4 cut(s) 276, 795, 977, 1098
BsuTUI ATCGAT 1 cut(s) 687
BtgI CCRYGG 1 cut(s) 1078
BtrI CACGTC 1 cut(s) 349
BtsCI GGATG 3 cut(s) 707, 919, 1195
BtsIMutI CAGTG 1 cut(s) 1045
Cac8I GCNNGC 3 cut(s) 24, 541, 905
Cfr10I RCCGGY 3 cut(s) 167, 539, 820
Cfr13I GGNCC 7 cut(s) 279, 560, 651, 663, 867, 1075, 1096
ClaI ATCGAT 1 cut(s) 687
Csp6I GTAC 5 cut(s) 223, 483, 598, 929, 1267
CspAI ACCGGT 1 cut(s) 820
CviAII CATG 4 cut(s) 138, 544, 904, 1079
CviQI GTAC 5 cut(s) 223, 483, 598, 929, 1267
DdeI CTNAG 4 cut(s) 432, 700, 829, 852
DpnI GATC 6 cut(s) 209, 555, 633, 686, 690, 880
DpnII GATC 6 cut(s) 207, 553, 631, 684, 688, 878
DraI TTTAAA 1 cut(s) 1260
EaeI YGGCCR 1 cut(s) 975
Eco130I CCWWGG 1 cut(s) 1078
Eco24I GRGCYC 1 cut(s) 15
Eco32I GATATC 1 cut(s) 718
Eco47I GGWCC 6 cut(s) 279, 560, 651, 663, 867, 1075
Eco57I CTGAAG 1 cut(s) 585
Eco88I CYCGRG 1 cut(s) 1018
EcoNI CCTNNNNNAGG 1 cut(s) 567
EcoO109I RGGNCCY 1 cut(s) 663
EcoRII CCWGG 1 cut(s) 1169
EcoRV GATATC 1 cut(s) 718
EcoT14I CCWWGG 1 cut(s) 1078
EcoT38I GRGCYC 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 1078
Esp3I CGTCTC 2 cut(s) 492, 768
FaeI CATG 4 cut(s) 141, 547, 907, 1082
FaqI GGGAC 3 cut(s) 637, 649, 973
FatI CATG 4 cut(s) 137, 543, 903, 1078
FauI CCCGC 1 cut(s) 1085
FblI GTMKAC 1 cut(s) 825
Fnu4HI GCNGC 1 cut(s) 1105
FokI GGATG 3 cut(s) 694, 906, 1182
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 1105
FspBI CTAG 1 cut(s) 860
GluI GCNGC 1 cut(s) 1105
HaeIII GGCC 4 cut(s) 276, 795, 977, 1098
HapII CCGG 9 cut(s) 168, 220, 277, 449, 540, 678, 723, 792, 821
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 4 cut(s) 141, 547, 907, 1082
HincII GTYRAC 2 cut(s) 394, 1008
HindII GTYRAC 2 cut(s) 394, 1008
HindIII AAGCTT 1 cut(s) 611
HinfI GANTC 8 cut(s) 122, 173, 395, 799, 856, 949, 986, 1016
HpaII CCGG 9 cut(s) 168, 220, 277, 449, 540, 678, 723, 792, 821
HphI GGTGA 5 cut(s) 44, 154, 448, 712, 877
Hpy188I TCNGA 8 cut(s) 146, 433, 496, 847, 855, 867, 985, 1304
Hpy188III TCNNGA 4 cut(s) 77, 289, 563, 771
Hpy99I CGWCG 3 cut(s) 197, 350, 413
HpyAV CCTTC 4 cut(s) 74, 563, 754, 824
HpyCH4III ACNGT 7 cut(s) 49, 98, 371, 391, 602, 641, 889
HpyCH4IV ACGT 4 cut(s) 117, 192, 348, 485
HpyCH4V TGCA 1 cut(s) 907
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 602, 1104
HpyF3I CTNAG 4 cut(s) 432, 700, 829, 852
HpySE526I ACGT 4 cut(s) 117, 192, 348, 485
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 4 cut(s) 141, 547, 907, 1082
KflI GGGWCCC 1 cut(s) 663
KroI GCCGGC 1 cut(s) 539
KroNI GCCGGC 1 cut(s) 541
Kzo9I GATC 6 cut(s) 207, 553, 631, 684, 688, 878
LmnI GCTCC 2 cut(s) 451, 725
LweI GCATC 1 cut(s) 526
MaeI CTAG 1 cut(s) 860
MaeII ACGT 4 cut(s) 117, 192, 348, 485
MaeIII GTNAC 4 cut(s) 43, 133, 160, 1064
MalI GATC 6 cut(s) 209, 555, 633, 686, 690, 880
MboI GATC 6 cut(s) 207, 553, 631, 684, 688, 878
MboII GAAGA 3 cut(s) 504, 578, 1289
MflI RGATCY 1 cut(s) 631
MhlI GDGCHC 1 cut(s) 15
MlsI TGGCCA 1 cut(s) 977
MluCI AATT 9 cut(s) 56, 244, 299, 325, 373, 1176, 1185, 1203, 1255
MluNI TGGCCA 1 cut(s) 977
MlyI GAGTC 7 cut(s) 116, 182, 389, 865, 943, 995, 1010
MmeI TCCRAC 4 cut(s) 124, 150, 254, 845
Mox20I TGGCCA 1 cut(s) 977
MroNI GCCGGC 1 cut(s) 539
MscI TGGCCA 1 cut(s) 977
MseI TTAA 7 cut(s) 180, 962, 1002, 1155, 1179, 1253, 1259
MslI CAYNNNNRTG 2 cut(s) 287, 908
Msp20I TGGCCA 1 cut(s) 977
MspI CCGG 9 cut(s) 168, 220, 277, 449, 540, 678, 723, 792, 821
MspR9I CCNGG 2 cut(s) 678, 1171
MvaI CCWGG 1 cut(s) 1171
MwoI GCNNNNNNNGC 3 cut(s) 19, 602, 1104
NaeI GCCGGC 1 cut(s) 541
NciI CCSGG 1 cut(s) 678
NcoI CCATGG 1 cut(s) 1078
NdeII GATC 6 cut(s) 207, 553, 631, 684, 688, 878
NgoMIV GCCGGC 1 cut(s) 539
NlaIII CATG 4 cut(s) 141, 547, 907, 1082
NlaIV GGNNCC 7 cut(s) 112, 604, 653, 664, 665, 869, 1097
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 2 cut(s) 547, 907
OliI CACNNNNGTG 1 cut(s) 287
PaeI GCATGC 1 cut(s) 907
PcsI WCGNNNNNNNCGW 2 cut(s) 354, 1025
PdiI GCCGGC 1 cut(s) 541
PfeI GAWTC 1 cut(s) 799
Pfl23II CGTACG 2 cut(s) 482, 597
PflFI GACNNNGTC 1 cut(s) 194
PflMI CCANNNNNTGG 1 cut(s) 938
PfoI TCCNGGA 1 cut(s) 676
PinAI ACCGGT 1 cut(s) 820
PkrI GCNGC 1 cut(s) 1106
Ple19I CGATCG 1 cut(s) 881
PleI GAGTC 7 cut(s) 116, 181, 389, 864, 943, 994, 1010
PpsI GAGTC 7 cut(s) 116, 181, 389, 864, 943, 994, 1010
Ppu21I YACGTR 1 cut(s) 118
PpuMI RGGWCCY 1 cut(s) 663
PshAI GACNNNNGTC 1 cut(s) 953
PshBI ATTAAT 2 cut(s) 180, 1155
PsiI TTATAA 2 cut(s) 617, 785
Psp5II RGGWCCY 1 cut(s) 663
Psp6I CCWGG 1 cut(s) 1169
PspGI CCWGG 1 cut(s) 1169
PspLI CGTACG 2 cut(s) 482, 597
PspN4I GGNNCC 7 cut(s) 112, 604, 653, 664, 665, 869, 1097
PspPI GGNCC 7 cut(s) 279, 560, 651, 663, 867, 1075, 1096
PspPPI RGGWCCY 1 cut(s) 663
PsuI RGATCY 1 cut(s) 631
PsyI GACNNNGTC 1 cut(s) 194
PvuI CGATCG 1 cut(s) 881
RsaI GTAC 5 cut(s) 224, 484, 599, 930, 1268
RsaNI GTAC 5 cut(s) 223, 483, 598, 929, 1267
RseI CAYNNNNRTG 2 cut(s) 287, 908
SaqAI TTAA 7 cut(s) 180, 962, 1002, 1155, 1179, 1253, 1259
SatI GCNGC 1 cut(s) 1105
Sau3AI GATC 6 cut(s) 207, 553, 631, 684, 688, 878
Sau96I GGNCC 7 cut(s) 279, 560, 651, 663, 867, 1075, 1096
ScaI AGTACT 1 cut(s) 1268
SchI GAGTC 7 cut(s) 116, 182, 389, 865, 943, 995, 1010
ScrFI CCNGG 2 cut(s) 678, 1171
SduI GDGCHC 1 cut(s) 15
SfaNI GCATC 1 cut(s) 526
SgrAI CRCCGGYG 1 cut(s) 167
SinI GGWCC 6 cut(s) 279, 560, 651, 663, 867, 1075
SmiMI CAYNNNNRTG 2 cut(s) 287, 908
SmlI CTYRAG 2 cut(s) 75, 951
SmoI CTYRAG 2 cut(s) 75, 951
SphI GCATGC 1 cut(s) 907
Sse9I AATT 9 cut(s) 56, 244, 299, 325, 373, 1176, 1185, 1203, 1255
SsiI CCGC 5 cut(s) 529, 740, 1086, 1092, 1104
SspMI CTAG 1 cut(s) 860
StyD4I CCNGG 2 cut(s) 676, 1169
StyI CCWWGG 1 cut(s) 1078
TaaI ACNGT 7 cut(s) 49, 98, 371, 391, 602, 641, 889
TaiI ACGT 4 cut(s) 120, 195, 351, 488
TaqI TCGA 4 cut(s) 345, 534, 687, 1058
TasI AATT 9 cut(s) 56, 244, 299, 325, 373, 1176, 1185, 1203, 1255
TatI WGTACW 1 cut(s) 1266
TauI GCSGC 1 cut(s) 1107
TfiI GAWTC 1 cut(s) 799
Tru1I TTAA 7 cut(s) 180, 962, 1002, 1155, 1179, 1253, 1259
Tru9I TTAA 7 cut(s) 180, 962, 1002, 1155, 1179, 1253, 1259
TscAI CASTG 1 cut(s) 1045
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 2 cut(s) 565, 1285
TspGWI ACGGA 3 cut(s) 203, 470, 480
TspRI CASTG 1 cut(s) 1045
Tth111I GACNNNGTC 1 cut(s) 194
Van91I CCANNNNNTGG 1 cut(s) 938
VpaK11BI GGWCC 6 cut(s) 279, 560, 651, 663, 867, 1075
VspI ATTAAT 2 cut(s) 180, 1155
XagI CCTNNNNNAGG 1 cut(s) 567
XapI RAATTY 3 cut(s) 299, 1203, 1255
XceI RCATGY 2 cut(s) 547, 907
XmiI GTMKAC 1 cut(s) 825
XspI CTAG 1 cut(s) 860
ZraI GACGTC 1 cut(s) 193
ZrmI AGTACT 1 cut(s) 1268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.