AT3G46280

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001437
Physical Location & Seq
Reverse (-)
17005423 .. 17008528
3106 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G46280.1

Sequence Viewer

Length: 1416 bp
ATGATGGAGGCGCTTCTTTATGTCATCACTCTCTTCTCTCTCTCAGCCCTAACCGTTACATTAGGAGAAAGTATAAGCATCGACTGTGGATCAACCGGATCTTACGTGGACTCCAACAATGTAACATGGGTCGGAGATAAAGGCTTCGTCACCAACGGCGAGCCCATGAAGATTCCGGACGTTGTCAAAAAGCCAATCAACACTCTCCGGTACTTCCCAACTGGTCAAACCAACTGCTACACCAACATTCCGGTGACAAAAGGCCAGAAAACCCTCGTGAGGACGAAGTTTTACTATGAGAACTACGACGCGAAGTTCTCGCCGCCATCTTTTGATGTGATTTATGACGGGAAACACCGTGATTCTATTGTAATTACCGAGTCGTTGCTAAATGATGAAGAAACGTTCTATTTCTCGGAGGTGATATATGTTCCGGAGAATAAGAATATCAGCGTCTGTCTCTTACGTACGTCTCCGTCCGACAACCCATTTATATCGTCCATTGAAGTTTATAGTTTGGACACTGGCATGTACGACGATCTTGGTCCTAACGAAGGTCTCATTCTCCACGACAGAATTGCATACGGTGCCAAAGAGCTTATAAGCTACCCGTTAGACCCCTACGGTAGGGTATGGTTAGCGTTAGGATCCCAAGACTCCACACTGACCGATCTAACGACCTCAGCCCCATCAATAGACATCACCGGGGCGTCGAACAAGCCACCAGAGATTGTTATGTCAAAGGCATTATCAGGAGTCGGCTTAGTACTCTCAGACCAGACTCTACCCCTAACCGGAGTACCAGTATACTTGGTTCTTTACTTCTCAGAGCCTCAAAGTCTAGGTCGAACCCAGAGACGATCGTTCAACGTTTTCTTGGACAACACTCAAGTGGGTTCGCGTCCCATCGTACCGGTTTTTGGGAAAGCAACTCAATTCATTTTGAGAGATGTAGTGGCCACATCGGCGTCCCAGATAGTCTTTCAGTCAACGGATGACTCCGTTTTGCCACCCCTCATCAACGGATTGGAGCTGTACTCGATAAGTAATACCAGTCCAGACAGTGGAGGCGGCGGTGGAGACCAAGGCGGCGGTAGTACGGATGATTCGGAAGGTTCTGGAGGAGCGAAACAAGCAAAAAATTTGGGAAAAGGTGGGGCAAAAAGCAGTGGAGGGAAGAAGAATAACAAATTACCACTCATTCTTGGCGTTACGTTCGCCTCCGCCTTTGCAGTTCTCGCGTCAGCGTTTGCAGCTATTTGGAAAAAGCGTCAAAATGCTAAGTCACAGTCGAACAGTACTGTACCAAATACGTCCACAGAGCATGGAACAGGCACAGGGATGTCGCCTCTAGTTGGACAGCAATTTGCCAGCGATATGACTGATTCATATGTTGTTGAAGATGGACATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

471

Amino Acids

50.5

Weight (kDa)

4.97

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 27 - 348 8.6e-73 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 602
AccB1I GGYRCC 1 cut(s) 587
AccB7I CCANNNNNTGG 1 cut(s) 1064
AccI GTMKAC 1 cut(s) 807
AccII CGCG 3 cut(s) 311, 901, 1241
AccIII TCCGGA 2 cut(s) 175, 433
AciI CCGC 6 cut(s) 323, 1071, 1074, 1089, 1092, 1224
AclI AACGTT 2 cut(s) 404, 870
AclWI GGATC 4 cut(s) 97, 106, 642, 655
AcoI YGGCCR 1 cut(s) 957
AcsI RAATTY 1 cut(s) 1141
AcyI GRCGYC 2 cut(s) 710, 968
AfiI CCNNNNNNNGG 7 cut(s) 279, 554, 627, 794, 920, 1064, 1355
AgeI ACCGGT 1 cut(s) 913
AgsI TTSAA 3 cut(s) 506, 868, 1400
AleI CACNNNNGTG 1 cut(s) 890
AluBI AGCT 4 cut(s) 598, 606, 1033, 1256
AluI AGCT 4 cut(s) 598, 606, 1033, 1256
Alw26I GTCTC 5 cut(s) 464, 477, 563, 850, 1074
AlwI GGATC 4 cut(s) 97, 106, 642, 655
AlwNI CAGNNNCTG 1 cut(s) 456
Aor13HI TCCGGA 2 cut(s) 175, 433
AoxI GGCC 2 cut(s) 262, 957
ApeKI GCWGC 1 cut(s) 1253
ApoI RAATTY 1 cut(s) 1141
ArsI GACNNNNNNTTYG 2 cut(s) 829, 861
AsiGI ACCGGT 1 cut(s) 913
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 1 cut(s) 545
AsuC2I CCSGG 1 cut(s) 706
AsuHPI GGTGA 4 cut(s) 142, 265, 433, 694
AvaII GGWCC 1 cut(s) 545
BaeI ACNNNNGTAYC 2 cut(s) 783, 816
BalI TGGCCA 1 cut(s) 959
BamHI GGATCC 1 cut(s) 647
BanI GGYRCC 1 cut(s) 587
BanII GRGCYC 1 cut(s) 165
BauI CACGAG 1 cut(s) 275
BbvCI CCTCAGC 1 cut(s) 682
BbvI GCAGC 1 cut(s) 1265
BccI CCATC 4 cut(s) 334, 697, 914, 1397
BceAI ACGGC 1 cut(s) 172
BcgI CGANNNNNNTGC 2 cut(s) 560, 594
BcnI CCSGG 1 cut(s) 706
BcoDI GTCTC 5 cut(s) 464, 477, 563, 850, 1074
BfaI CTAG 2 cut(s) 842, 1352
BfoI RGCGCY 1 cut(s) 14
BglI GCCNNNNNGGC 1 cut(s) 965
BisI GCNGC 4 cut(s) 323, 1072, 1090, 1254
BlsI GCNGC 4 cut(s) 324, 1073, 1091, 1255
BmcAI AGTACT 2 cut(s) 768, 1300
Bme1390I CCNGG 1 cut(s) 706
Bme18I GGWCC 1 cut(s) 545
BmgT120I GGNCC 1 cut(s) 545
BmiI GGNNCC 2 cut(s) 589, 649
BmrFI CCNGG 1 cut(s) 706
BmsI GCATC 1 cut(s) 87
BplI GAGNNNNNCTC 2 cut(s) 1022, 1054
BpmI CTGGAG 1 cut(s) 1140
Bpu10I CCTNAGC 1 cut(s) 682
BpuEI CTTGAG 1 cut(s) 873
BpuMI CCSGG 1 cut(s) 706
BsaAI YACGTR 2 cut(s) 106, 467
BsaBI GATNNNNATC 1 cut(s) 1407
BsaHI GRCGYC 2 cut(s) 710, 968
BsaI GGTCTC 2 cut(s) 563, 1074
BsaJI CCNNGG 2 cut(s) 705, 1084
BsaWI WCCGGW 7 cut(s) 95, 175, 207, 250, 433, 794, 913
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 789, 819
Bsc4I CCNNNNNNNGG 7 cut(s) 279, 554, 627, 794, 920, 1064, 1355
Bse118I RCCGGY 1 cut(s) 913
Bse1I ACTGG 4 cut(s) 226, 529, 803, 1053
Bse8I GATNNNNATC 1 cut(s) 1407
BseAI TCCGGA 2 cut(s) 175, 433
BseDI CCNNGG 2 cut(s) 705, 1084
BseGI GGATG 3 cut(s) 1000, 1108, 1347
BseJI GATNNNNATC 1 cut(s) 1407
BseLI CCNNNNNNNGG 7 cut(s) 279, 554, 627, 794, 920, 1064, 1355
BseMII CTCAG 4 cut(s) 57, 696, 786, 840
BseNI ACTGG 4 cut(s) 226, 529, 803, 1053
BseRI GAGGAG 1 cut(s) 1137
BseXI GCAGC 1 cut(s) 1265
Bsh1236I CGCG 3 cut(s) 311, 901, 1241
Bsh1285I CGRYCG 1 cut(s) 863
BshFI GGCC 2 cut(s) 264, 959
BshNI GGYRCC 1 cut(s) 587
BshTI ACCGGT 1 cut(s) 913
BsiEI CGRYCG 1 cut(s) 863
BsiSI CCGG 8 cut(s) 96, 176, 208, 251, 434, 705, 795, 914
BsiWI CGTACG 1 cut(s) 467
BslFI GGGAC 2 cut(s) 888, 955
BslI CCNNNNNNNGG 7 cut(s) 279, 554, 627, 794, 920, 1064, 1355
BsmAI GTCTC 5 cut(s) 464, 477, 563, 850, 1074
BsmBI CGTCTC 2 cut(s) 477, 850
BsmFI GGGAC 2 cut(s) 888, 955
BsnI GGCC 2 cut(s) 264, 959
Bso31I GGTCTC 2 cut(s) 563, 1074
Bsp1286I GDGCHC 1 cut(s) 165
Bsp13I TCCGGA 2 cut(s) 175, 433
Bsp143I GATC 6 cut(s) 89, 98, 538, 647, 670, 860
BspACI CCGC 6 cut(s) 323, 1071, 1074, 1089, 1092, 1224
BspANI GGCC 2 cut(s) 264, 959
BspCNI CTCAG 4 cut(s) 56, 695, 785, 839
BspEI TCCGGA 2 cut(s) 175, 433
BspFNI CGCG 3 cut(s) 311, 901, 1241
BspLI GGNNCC 2 cut(s) 589, 649
BspPI GGATC 4 cut(s) 97, 106, 642, 655
BspT107I GGYRCC 1 cut(s) 587
BspTNI GGTCTC 2 cut(s) 563, 1074
BsrFI RCCGGY 1 cut(s) 913
BsrI ACTGG 4 cut(s) 226, 529, 803, 1053
BssAI RCCGGY 1 cut(s) 913
BssECI CCNNGG 2 cut(s) 705, 1084
BssMI GATC 6 cut(s) 89, 98, 538, 647, 670, 860
BssNAI GTATAC 1 cut(s) 808
BssNI GRCGYC 2 cut(s) 710, 968
BssSI CACGAG 1 cut(s) 275
BssT1I CCWWGG 1 cut(s) 1084
Bst1107I GTATAC 1 cut(s) 808
Bst2BI CACGAG 1 cut(s) 275
Bst4CI ACNGT 9 cut(s) 55, 86, 359, 587, 626, 1064, 1290, 1298, 1303
Bst6I CTCTTC 1 cut(s) 38
BstACI GRCGYC 2 cut(s) 710, 968
BstAPI GCANNNNNTGC 1 cut(s) 587
BstBAI YACGTR 2 cut(s) 106, 467
BstC8I GCNNGC 2 cut(s) 161, 1372
BstDEI CTNAG 6 cut(s) 43, 682, 763, 772, 826, 1281
BstENI CCTNNNNNAGG 2 cut(s) 552, 625
BstF5I GGATG 3 cut(s) 1000, 1108, 1347
BstFNI CGCG 3 cut(s) 311, 901, 1241
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 6 cut(s) 92, 101, 541, 650, 673, 863
BstMAI GTCTC 5 cut(s) 464, 477, 563, 850, 1074
BstMBI GATC 6 cut(s) 89, 98, 538, 647, 670, 860
BstMCI CGRYCG 1 cut(s) 863
BstMWI GCNNNNNNNGC 5 cut(s) 587, 965, 1133, 1238, 1253
BstNSI RCATGY 1 cut(s) 532
BstSCI CCNGG 1 cut(s) 704
BstSNI TACGTA 1 cut(s) 467
BstUI CGCG 3 cut(s) 311, 901, 1241
BstV1I GCAGC 1 cut(s) 1265
BstX2I RGATCY 2 cut(s) 98, 647
BstYI RGATCY 2 cut(s) 98, 647
BstZ17I GTATAC 1 cut(s) 808
BsuRI GGCC 2 cut(s) 264, 959
BtsCI GGATG 3 cut(s) 1000, 1108, 1347
BtsI GCAGTG 1 cut(s) 1174
BtsIMutI CAGTG 4 cut(s) 522, 662, 1069, 1174
Cac8I GCNNGC 2 cut(s) 161, 1372
CaiI CAGNNNCTG 1 cut(s) 456
CfoI GCGC 1 cut(s) 13
Cfr10I RCCGGY 1 cut(s) 913
Cfr13I GGNCC 1 cut(s) 545
CseI GACGC 7 cut(s) 317, 442, 699, 890, 957, 1230, 1259
CspAI ACCGGT 1 cut(s) 913
CviAII CATG 4 cut(s) 126, 166, 529, 1325
DdeI CTNAG 6 cut(s) 43, 682, 763, 772, 826, 1281
DpnI GATC 6 cut(s) 91, 100, 540, 649, 672, 862
DpnII GATC 6 cut(s) 89, 98, 538, 647, 670, 860
EaeI YGGCCR 1 cut(s) 957
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EciI GGCGGA 1 cut(s) 1213
Eco105I TACGTA 1 cut(s) 467
Eco130I CCWWGG 1 cut(s) 1084
Eco24I GRGCYC 1 cut(s) 165
Eco31I GGTCTC 2 cut(s) 563, 1074
Eco47I GGWCC 1 cut(s) 545
EcoNI CCTNNNNNAGG 2 cut(s) 552, 625
EcoT14I CCWWGG 1 cut(s) 1084
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 1084
Esp3I CGTCTC 2 cut(s) 477, 850
FaeI CATG 4 cut(s) 129, 169, 532, 1328
FaqI GGGAC 2 cut(s) 888, 955
FatI CATG 4 cut(s) 125, 165, 528, 1324
FauNDI CATATG 1 cut(s) 1390
FblI GTMKAC 1 cut(s) 807
Fnu4HI GCNGC 4 cut(s) 323, 1072, 1090, 1254
FokI GGATG 3 cut(s) 1007, 1115, 1354
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 4 cut(s) 323, 1072, 1090, 1254
FspBI CTAG 2 cut(s) 842, 1352
GlaI GCGC 1 cut(s) 12
GluI GCNGC 4 cut(s) 323, 1072, 1090, 1254
GsuI CTGGAG 1 cut(s) 1140
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 2 cut(s) 264, 959
HapII CCGG 8 cut(s) 96, 176, 208, 251, 434, 705, 795, 914
HgaI GACGC 7 cut(s) 317, 442, 699, 890, 957, 1230, 1259
HhaI GCGC 1 cut(s) 13
Hin1I GRCGYC 2 cut(s) 710, 968
Hin1II CATG 4 cut(s) 129, 169, 532, 1328
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HincII GTYRAC 1 cut(s) 990
HindII GTYRAC 1 cut(s) 990
HpaII CCGG 8 cut(s) 96, 176, 208, 251, 434, 705, 795, 914
HphI GGTGA 4 cut(s) 142, 265, 433, 694
Hpy166II GTNNAC 4 cut(s) 109, 808, 990, 1317
Hpy188I TCNGA 6 cut(s) 134, 418, 481, 775, 829, 1111
Hpy188III TCNNGA 6 cut(s) 176, 277, 434, 753, 1058, 1119
Hpy8I GTNNAC 4 cut(s) 109, 808, 990, 1317
Hpy99I CGWCG 3 cut(s) 311, 539, 715
HpyAV CCTTC 2 cut(s) 548, 1106
HpyCH4III ACNGT 9 cut(s) 55, 86, 359, 587, 626, 1064, 1290, 1298, 1303
HpyCH4IV ACGT 8 cut(s) 105, 180, 404, 466, 470, 870, 1214, 1313
HpyCH4V TGCA 3 cut(s) 581, 1232, 1253
HpyF10VI GCNNNNNNNGC 5 cut(s) 587, 965, 1133, 1238, 1253
HpyF3I CTNAG 6 cut(s) 43, 682, 763, 772, 826, 1281
HpySE526I ACGT 8 cut(s) 105, 180, 404, 466, 470, 870, 1214, 1313
Hsp92I GRCGYC 2 cut(s) 710, 968
Hsp92II CATG 4 cut(s) 129, 169, 532, 1328
HspAI GCGC 1 cut(s) 11
Kpn2I TCCGGA 2 cut(s) 175, 433
Kzo9I GATC 6 cut(s) 89, 98, 538, 647, 670, 860
LmnI GCTCC 2 cut(s) 1030, 1124
Lsp1109I GCAGC 1 cut(s) 1265
LweI GCATC 1 cut(s) 87
MaeI CTAG 2 cut(s) 842, 1352
MaeII ACGT 8 cut(s) 105, 180, 404, 466, 470, 870, 1214, 1313
MaeIII GTNAC 6 cut(s) 55, 121, 148, 253, 1210, 1284
MalI GATC 6 cut(s) 91, 100, 540, 649, 672, 862
MboI GATC 6 cut(s) 89, 98, 538, 647, 670, 860
MboII GAAGA 6 cut(s) 25, 181, 410, 1189, 1192, 1412
MflI RGATCY 2 cut(s) 98, 647
MhlI GDGCHC 1 cut(s) 165
MlsI TGGCCA 1 cut(s) 959
MluCI AATT 6 cut(s) 372, 576, 935, 1141, 1190, 1364
MluNI TGGCCA 1 cut(s) 959
MlyI GAGTC 6 cut(s) 104, 389, 650, 765, 775, 992
MmeI TCCRAC 4 cut(s) 112, 138, 504, 1336
Mox20I TGGCCA 1 cut(s) 959
MroI TCCGGA 2 cut(s) 175, 433
MscI TGGCCA 1 cut(s) 959
MslI CAYNNNNRTG 4 cut(s) 251, 527, 890, 1340
Msp20I TGGCCA 1 cut(s) 959
MspI CCGG 8 cut(s) 96, 176, 208, 251, 434, 705, 795, 914
MspR9I CCNGG 1 cut(s) 706
MvnI CGCG 3 cut(s) 311, 901, 1241
MwoI GCNNNNNNNGC 5 cut(s) 587, 965, 1133, 1238, 1253
NciI CCSGG 1 cut(s) 706
NdeI CATATG 1 cut(s) 1390
NdeII GATC 6 cut(s) 89, 98, 538, 647, 670, 860
NlaIII CATG 4 cut(s) 129, 169, 532, 1328
NlaIV GGNNCC 2 cut(s) 589, 649
NmuCI GTSAC 3 cut(s) 148, 253, 1284
NspI RCATGY 1 cut(s) 532
OliI CACNNNNGTG 1 cut(s) 890
PfeI GAWTC 4 cut(s) 172, 362, 1106, 1385
Pfl23II CGTACG 1 cut(s) 467
PflFI GACNNNGTC 1 cut(s) 182
PflMI CCANNNNNTGG 1 cut(s) 1064
PinAI ACCGGT 1 cut(s) 913
PkrI GCNGC 4 cut(s) 324, 1073, 1091, 1255
Ple19I CGATCG 1 cut(s) 863
PleI GAGTC 6 cut(s) 104, 388, 650, 764, 775, 992
PpsI GAGTC 6 cut(s) 104, 388, 650, 764, 775, 992
Ppu21I YACGTR 2 cut(s) 106, 467
PsiI TTATAA 1 cut(s) 602
Psp1406I AACGTT 2 cut(s) 404, 870
PspLI CGTACG 1 cut(s) 467
PspN4I GGNNCC 2 cut(s) 589, 649
PspPI GGNCC 1 cut(s) 545
PsrI GAACNNNNNNTAC 2 cut(s) 798, 830
PstNI CAGNNNCTG 1 cut(s) 456
PsuI RGATCY 2 cut(s) 98, 647
PsyI GACNNNGTC 1 cut(s) 182
PvuI CGATCG 1 cut(s) 863
RseI CAYNNNNRTG 4 cut(s) 251, 527, 890, 1340
SatI GCNGC 4 cut(s) 323, 1072, 1090, 1254
Sau3AI GATC 6 cut(s) 89, 98, 538, 647, 670, 860
Sau96I GGNCC 1 cut(s) 545
ScaI AGTACT 2 cut(s) 768, 1300
SchI GAGTC 6 cut(s) 104, 389, 650, 765, 775, 992
ScrFI CCNGG 1 cut(s) 706
SduI GDGCHC 1 cut(s) 165
SfaNI GCATC 1 cut(s) 87
SinI GGWCC 1 cut(s) 545
SmiMI CAYNNNNRTG 4 cut(s) 251, 527, 890, 1340
SmlI CTYRAG 1 cut(s) 888
SmoI CTYRAG 1 cut(s) 888
SnaBI TACGTA 1 cut(s) 467
Sse9I AATT 6 cut(s) 372, 576, 935, 1141, 1190, 1364
SsiI CCGC 6 cut(s) 323, 1071, 1074, 1089, 1092, 1224
SspMI CTAG 2 cut(s) 842, 1352
StyD4I CCNGG 1 cut(s) 704
StyI CCWWGG 1 cut(s) 1084
TaaI ACNGT 9 cut(s) 55, 86, 359, 587, 626, 1064, 1290, 1298, 1303
TaiI ACGT 8 cut(s) 108, 183, 407, 469, 473, 873, 1217, 1316
TaqI TCGA 5 cut(s) 81, 713, 847, 1040, 1292
TaqII GACCGA 1 cut(s) 683
TasI AATT 6 cut(s) 372, 576, 935, 1141, 1190, 1364
TatI WGTACW 3 cut(s) 766, 1035, 1298
TauI GCSGC 3 cut(s) 325, 1074, 1092
TfiI GAWTC 4 cut(s) 172, 362, 1106, 1385
TscAI CASTG 4 cut(s) 529, 669, 1069, 1174
TseFI GTSAC 3 cut(s) 148, 253, 1284
TseI GCWGC 1 cut(s) 1253
Tsp45I GTSAC 3 cut(s) 148, 253, 1284
TspDTI ATGAA 4 cut(s) 182, 411, 928, 1377
TspGWI ACGGA 5 cut(s) 465, 991, 1007, 1038, 1115
TspRI CASTG 4 cut(s) 529, 669, 1069, 1174
Tth111I GACNNNGTC 1 cut(s) 182
Van91I CCANNNNNTGG 1 cut(s) 1064
VpaK11BI GGWCC 1 cut(s) 545
XagI CCTNNNNNAGG 2 cut(s) 552, 625
XapI RAATTY 1 cut(s) 1141
XceI RCATGY 1 cut(s) 532
XmiI GTMKAC 1 cut(s) 807
XspI CTAG 2 cut(s) 842, 1352
ZrmI AGTACT 2 cut(s) 768, 1300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.