Rroxscaffold_3G00275700

Carbohydrate-binding protein of the ER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001437
Physical Location & Seq
Reverse (-)
67056356 .. 67057429
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00275700.1

Sequence Viewer

Length: 957 bp
ATGGCTAATACCCCTGTTCCAGTATTCCTAATCAACCTTGTAGCTCTGTCAGCTTCAATATTATTCTCTGTCATAATCAATCCCTCCGGCGCCGTGTTCGGGAGCATCGATTGTGGCTTCAATGGTTCCTCCACTTACAAGGACAAAAATTCGATCGTATGGACGGGGGACGATGCTTACATTAACAATAAGCACGACTCCCAAGCGCTCCAGTACATCGATACCGAAGACGACTGGAGCAACAGCGTACGAATCTTCCCAGCCTTGAAGAAAAACTGCTACACCATCCCAGTTGACAAAGCTGGCCAAAGAATTCTGGTTCGAGCAAGTTTCTTTTATTGGGGCTTTTATGATAATAAGACTTCTCGCACCTATGAGCTCCAGTTTGACGGCAACTACCGGGCCACCGTTAACAAACCCAATATTGTTTCTTATGAGGCAATCTATGTTGCCAAGCAGAATACGACTAGCATATGTCTTGCTCGAATTGAAGATGATCAGATCCCATTCATGTCTGCACTAGAAATTCGAAGCTTGGATTTCAATATGTACAGCCATGTCGATCCCAAGTATGCTCTTCTGTTGGCAAATAGGTTTTATGATGGTGGAAATCAAATTCTCAGGTATCCAGATGATGCATATGATCGAATTTGGGTGCCGCAGATTGGTTTTGGATCAATTACTGTGAGCGTGAAAGGTAACGGTGGGAGCATTGACACGAGTGGTGCACAAGATAATCCTCCAGTAGCTGTGTTGCGAAATGCAGTGGCAACCGCAGGAACTGCTTGGACACTAAGTCTAACCACCAGCGGGCTTCCAGACGATAAGAACGTACCAATTTACATCACAACTTACTTTTCTGAAGTTGACAAAACGGTCAAAAGATCCCTACAATTTTCGATAGACAGCAAGCCTTATGATCGACCTGTGGTTCCACCTTTTGGAAGCGTGCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

318

Amino Acids

35.3

Weight (kDa)

5.26

Isoelectric Point (pI)

41.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 36 - 302 8.6e-52 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 875
AccB1I GGYRCC 2 cut(s) 89, 655
AccB7I CCANNNNNTGG 1 cut(s) 941
AciI CCGC 3 cut(s) 659, 774, 810
AclWI GGATC 4 cut(s) 496, 557, 682, 879
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 5 cut(s) 148, 312, 525, 615, 648
AcuI CTGAAG 1 cut(s) 882
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 4 cut(s) 215, 249, 551, 834
AfeI AGCGCT 1 cut(s) 207
AfiI CCNNNNNNNGG 4 cut(s) 99, 665, 810, 941
AgsI TTSAA 5 cut(s) 57, 121, 268, 491, 544
AhdI GACNNNNNGTC 1 cut(s) 795
AluBI AGCT 6 cut(s) 44, 53, 302, 379, 534, 749
AluI AGCT 6 cut(s) 44, 53, 302, 379, 534, 749
Alw21I GWGCWC 2 cut(s) 381, 730
Alw44I GTGCAC 1 cut(s) 726
AlwI GGATC 4 cut(s) 496, 557, 682, 879
AlwNI CAGNNNCTG 2 cut(s) 749, 782
Aor51HI AGCGCT 1 cut(s) 207
AoxI GGCC 2 cut(s) 304, 402
ApaLI GTGCAC 1 cut(s) 726
ApoI RAATTY 5 cut(s) 148, 312, 525, 615, 648
AspLEI GCGC 2 cut(s) 92, 208
AspS9I GGNCC 1 cut(s) 402
AsuC2I CCSGG 1 cut(s) 401
AsuII TTCGAA 1 cut(s) 529
BaeGI GKGCMC 1 cut(s) 730
BalI TGGCCA 1 cut(s) 306
BanI GGYRCC 2 cut(s) 89, 655
BanII GRGCYC 1 cut(s) 381
BauI CACGAG 1 cut(s) 718
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 2 cut(s) 381, 730
BccI CCATC 2 cut(s) 293, 596
BceAI ACGGC 3 cut(s) 77, 406, 937
BciVI GTATCC 1 cut(s) 636
BclI TGATCA 1 cut(s) 496
BcnI CCSGG 1 cut(s) 401
BfaI CTAG 2 cut(s) 468, 521
BfoI RGCGCY 2 cut(s) 93, 209
BfuI GTATCC 1 cut(s) 636
BisI GCNGC 1 cut(s) 659
BlsI GCNGC 1 cut(s) 660
Bme1390I CCNGG 1 cut(s) 401
BmeRI GACNNNNNGTC 1 cut(s) 795
BmgT120I GGNCC 1 cut(s) 402
BmiI GGNNCC 4 cut(s) 91, 127, 657, 933
BmrFI CCNGG 1 cut(s) 401
BmrI ACTGGG 1 cut(s) 284
BmsI GCATC 3 cut(s) 114, 163, 625
BmuI ACTGGG 1 cut(s) 284
BpiI GAAGAC 1 cut(s) 234
BpmI CTGGAG 4 cut(s) 194, 256, 365, 726
Bpu14I TTCGAA 1 cut(s) 529
BpuMI CCSGG 1 cut(s) 401
Bsa29I ATCGAT 2 cut(s) 108, 219
BsaHI GRCGYC 1 cut(s) 90
Bsc4I CCNNNNNNNGG 4 cut(s) 99, 665, 810, 941
Bse1I ACTGG 6 cut(s) 20, 211, 239, 290, 382, 743
BseCI ATCGAT 2 cut(s) 108, 219
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 4 cut(s) 99, 665, 810, 941
BseMII CTCAG 1 cut(s) 634
BseNI ACTGG 6 cut(s) 20, 211, 239, 290, 382, 743
BseSI GKGCMC 1 cut(s) 730
BseYI CCCAGC 1 cut(s) 259
BsgI GTGCAG 1 cut(s) 501
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 2 cut(s) 306, 404
BshNI GGYRCC 2 cut(s) 89, 655
BshVI ATCGAT 2 cut(s) 108, 219
BsiEI CGRYCG 1 cut(s) 156
BsiHKAI GWGCWC 2 cut(s) 381, 730
BsiSI CCGG 2 cut(s) 87, 400
BsiWI CGTACG 1 cut(s) 247
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 4 cut(s) 99, 665, 810, 941
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 2 cut(s) 306, 404
Bsp119I TTCGAA 1 cut(s) 529
Bsp1286I GDGCHC 2 cut(s) 381, 730
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 8 cut(s) 153, 496, 501, 562, 643, 674, 884, 919
BspACI CCGC 3 cut(s) 659, 774, 810
BspANI GGCC 2 cut(s) 306, 404
BspCNI CTCAG 1 cut(s) 633
BspDI ATCGAT 2 cut(s) 108, 219
BspLI GGNNCC 4 cut(s) 91, 127, 657, 933
BspPI GGATC 4 cut(s) 496, 557, 682, 879
BspQI GCTCTTC 1 cut(s) 582
BspT104I TTCGAA 1 cut(s) 529
BspT107I GGYRCC 2 cut(s) 89, 655
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 6 cut(s) 20, 211, 239, 290, 382, 743
BssMI GATC 8 cut(s) 153, 496, 501, 562, 643, 674, 884, 919
BssNI GRCGYC 1 cut(s) 90
BssSI CACGAG 1 cut(s) 718
Bst2BI CACGAG 1 cut(s) 718
Bst4CI ACNGT 4 cut(s) 409, 685, 704, 877
Bst6I CTCTTC 1 cut(s) 582
BstACI GRCGYC 1 cut(s) 90
BstAPI GCANNNNNTGC 1 cut(s) 782
BstAUI TGTACA 1 cut(s) 549
BstBI TTCGAA 1 cut(s) 529
BstC8I GCNNGC 4 cut(s) 304, 812, 911, 950
BstDEI CTNAG 2 cut(s) 620, 794
BstF5I GGATG 1 cut(s) 285
BstH2I RGCGCY 2 cut(s) 93, 209
BstHHI GCGC 2 cut(s) 92, 208
BstKTI GATC 8 cut(s) 156, 499, 504, 565, 646, 677, 887, 922
BstMBI GATC 8 cut(s) 153, 496, 501, 562, 643, 674, 884, 919
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 2 cut(s) 50, 782
BstSCI CCNGG 1 cut(s) 399
BstSLI GKGCMC 1 cut(s) 730
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 2 cut(s) 501, 884
BstYI RGATCY 2 cut(s) 501, 884
Bsu15I ATCGAT 2 cut(s) 108, 219
BsuI GTATCC 1 cut(s) 636
BsuRI GGCC 2 cut(s) 306, 404
BsuTUI ATCGAT 2 cut(s) 108, 219
BtsCI GGATG 1 cut(s) 285
BtsI GCAGTG 1 cut(s) 771
BtsIMutI CAGTG 1 cut(s) 771
Cac8I GCNNGC 4 cut(s) 304, 812, 911, 950
CaiI CAGNNNCTG 2 cut(s) 749, 782
CfoI GCGC 2 cut(s) 92, 208
Cfr13I GGNCC 1 cut(s) 402
ClaI ATCGAT 2 cut(s) 108, 219
Csp6I GTAC 4 cut(s) 214, 248, 550, 833
CviAII CATG 2 cut(s) 511, 557
CviQI GTAC 4 cut(s) 214, 248, 550, 833
DdeI CTNAG 2 cut(s) 620, 794
DinI GGCGCC 1 cut(s) 91
DpnI GATC 8 cut(s) 155, 498, 503, 564, 645, 676, 886, 921
DpnII GATC 8 cut(s) 153, 496, 501, 562, 643, 674, 884, 919
DrdI GACNNNNNNGTC 1 cut(s) 875
DriI GACNNNNNGTC 1 cut(s) 795
DseDI GACNNNNNNGTC 1 cut(s) 875
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 582
Eam1105I GACNNNNNGTC 1 cut(s) 795
EarI CTCTTC 1 cut(s) 582
Ecl136II GAGCTC 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 381
Eco47III AGCGCT 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 882
EcoICRI GAGCTC 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 312
EcoT22I ATGCAT 1 cut(s) 640
EcoT38I GRGCYC 1 cut(s) 381
EgeI GGCGCC 1 cut(s) 91
EheI GGCGCC 1 cut(s) 91
FaeI CATG 2 cut(s) 514, 560
FaqI GGGAC 1 cut(s) 182
FatI CATG 2 cut(s) 510, 556
FauI CCCGC 1 cut(s) 803
FauNDI CATATG 2 cut(s) 473, 640
FbaI TGATCA 1 cut(s) 496
Fnu4HI GCNGC 1 cut(s) 659
FokI GGATG 1 cut(s) 272
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 1 cut(s) 659
FspBI CTAG 2 cut(s) 468, 521
GlaI GCGC 2 cut(s) 91, 207
GluI GCNGC 1 cut(s) 659
GsaI CCCAGC 1 cut(s) 263
GsuI CTGGAG 4 cut(s) 194, 256, 365, 726
HaeII RGCGCY 2 cut(s) 93, 209
HaeIII GGCC 2 cut(s) 306, 404
HapII CCGG 2 cut(s) 87, 400
HhaI GCGC 2 cut(s) 92, 208
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 2 cut(s) 514, 560
Hin6I GCGC 2 cut(s) 90, 206
HinP1I GCGC 2 cut(s) 90, 206
HincII GTYRAC 3 cut(s) 295, 412, 868
HindII GTYRAC 3 cut(s) 295, 412, 868
HindIII AAGCTT 1 cut(s) 532
HinfI GANTC 2 cut(s) 197, 252
HpaI GTTAAC 1 cut(s) 412
HpaII CCGG 2 cut(s) 87, 400
Hpy166II GTNNAC 4 cut(s) 295, 412, 728, 868
Hpy188I TCNGA 2 cut(s) 501, 862
Hpy188III TCNNGA 3 cut(s) 100, 629, 818
Hpy8I GTNNAC 4 cut(s) 295, 412, 728, 868
HpyCH4III ACNGT 4 cut(s) 409, 685, 704, 877
HpyCH4IV ACGT 1 cut(s) 831
HpyCH4V TGCA 4 cut(s) 518, 638, 728, 764
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 782
HpyF3I CTNAG 2 cut(s) 620, 794
HpySE526I ACGT 1 cut(s) 831
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 2 cut(s) 514, 560
HspAI GCGC 2 cut(s) 90, 206
KasI GGCGCC 1 cut(s) 89
Ksp22I TGATCA 1 cut(s) 496
KspAI GTTAAC 1 cut(s) 412
Kzo9I GATC 8 cut(s) 153, 496, 501, 562, 643, 674, 884, 919
LguI GCTCTTC 1 cut(s) 582
LmnI GCTCC 5 cut(s) 102, 213, 237, 384, 708
LweI GCATC 3 cut(s) 114, 163, 625
MaeI CTAG 2 cut(s) 468, 521
MaeII ACGT 1 cut(s) 831
MaeIII GTNAC 1 cut(s) 698
MalI GATC 8 cut(s) 155, 498, 503, 564, 645, 676, 886, 921
MboI GATC 8 cut(s) 153, 496, 501, 562, 643, 674, 884, 919
MboII GAAGA 5 cut(s) 239, 247, 280, 503, 569
MflI RGATCY 2 cut(s) 501, 884
MhlI GDGCHC 2 cut(s) 381, 730
MlsI TGGCCA 1 cut(s) 306
MluCI AATT 9 cut(s) 148, 312, 486, 525, 615, 648, 678, 837, 893
MluNI TGGCCA 1 cut(s) 306
Mly113I GGCGCC 1 cut(s) 90
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 4 cut(s) 94, 139, 430, 750
Mox20I TGGCCA 1 cut(s) 306
Mph1103I ATGCAT 1 cut(s) 640
MscI TGGCCA 1 cut(s) 306
MseI TTAA 2 cut(s) 183, 411
Msp20I TGGCCA 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 810
MspI CCGG 2 cut(s) 87, 400
MspR9I CCNGG 1 cut(s) 401
MwoI GCNNNNNNNGC 2 cut(s) 50, 782
NarI GGCGCC 1 cut(s) 90
NciI CCSGG 1 cut(s) 401
NdeI CATATG 2 cut(s) 473, 640
NdeII GATC 8 cut(s) 153, 496, 501, 562, 643, 674, 884, 919
NlaIII CATG 2 cut(s) 514, 560
NlaIV GGNNCC 4 cut(s) 91, 127, 657, 933
NsiI ATGCAT 1 cut(s) 640
NspV TTCGAA 1 cut(s) 529
PciSI GCTCTTC 1 cut(s) 582
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 828
PfeI GAWTC 1 cut(s) 252
Pfl23II CGTACG 1 cut(s) 247
PflMI CCANNNNNTGG 1 cut(s) 941
PkrI GCNGC 1 cut(s) 660
Ple19I CGATCG 1 cut(s) 156
PleI GAGTC 1 cut(s) 191
PluTI GGCGCC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 381
PspFI CCCAGC 1 cut(s) 259
PspLI CGTACG 1 cut(s) 247
PspN4I GGNNCC 4 cut(s) 91, 127, 657, 933
PspPI GGNCC 1 cut(s) 402
PstNI CAGNNNCTG 2 cut(s) 749, 782
PsuI RGATCY 2 cut(s) 501, 884
PvuI CGATCG 1 cut(s) 156
RsaI GTAC 4 cut(s) 215, 249, 551, 834
RsaNI GTAC 4 cut(s) 214, 248, 550, 833
SacI GAGCTC 1 cut(s) 381
SapI GCTCTTC 1 cut(s) 582
SaqAI TTAA 2 cut(s) 183, 411
SatI GCNGC 1 cut(s) 659
Sau3AI GATC 8 cut(s) 153, 496, 501, 562, 643, 674, 884, 919
Sau96I GGNCC 1 cut(s) 402
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 401
SduI GDGCHC 2 cut(s) 381, 730
SfaNI GCATC 3 cut(s) 114, 163, 625
SfoI GGCGCC 1 cut(s) 91
SfuI TTCGAA 1 cut(s) 529
Sse9I AATT 9 cut(s) 148, 312, 486, 525, 615, 648, 678, 837, 893
SsiI CCGC 3 cut(s) 659, 774, 810
SspDI GGCGCC 1 cut(s) 89
SspI AATATT 2 cut(s) 60, 424
SspMI CTAG 2 cut(s) 468, 521
SstI GAGCTC 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 399
TaaI ACNGT 4 cut(s) 409, 685, 704, 877
TaiI ACGT 1 cut(s) 834
TasI AATT 9 cut(s) 148, 312, 486, 525, 615, 648, 678, 837, 893
TatI WGTACW 2 cut(s) 213, 549
TauI GCSGC 1 cut(s) 661
TfiI GAWTC 1 cut(s) 252
Tru1I TTAA 2 cut(s) 183, 411
Tru9I TTAA 2 cut(s) 183, 411
TscAI CASTG 1 cut(s) 771
TspDTI ATGAA 1 cut(s) 499
TspRI CASTG 1 cut(s) 771
Van91I CCANNNNNTGG 1 cut(s) 941
VneI GTGCAC 1 cut(s) 726
XapI RAATTY 5 cut(s) 148, 312, 525, 615, 648
XspI CTAG 2 cut(s) 468, 521
Zsp2I ATGCAT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.